FFCP PHASE1:Hg19::chrX:132549456..132549473,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2239 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4452 | |||
|TSSclassifier=strong | |||
|UniProt=O75487 | |||
|association_with_transcript=44bp_to_ENST00000370828_5end | |||
|cluster_id=chrX:132549456..132549473,- | |||
|coexpression_cluster_id=C4850 | |||
|description=CAGE_peak_2_at_GPC4_5end | |||
|id=chrX:132549456..132549473,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.02e-23!115;UBERON:0000468!3.76e-18!659;UBERON:0005743!3.41e-17!86;UBERON:0001017!5.00e-17!82;UBERON:0001049!2.62e-15!57;UBERON:0005068!2.62e-15!57;UBERON:0006241!2.62e-15!57;UBERON:0007135!2.62e-15!57;UBERON:0000153!5.93e-15!129;UBERON:0007811!5.93e-15!129;UBERON:0000033!1.07e-14!123;UBERON:0003075!2.95e-14!86;UBERON:0007284!2.95e-14!86;UBERON:0000062!3.02e-14!511;UBERON:0002616!6.43e-14!59;UBERON:0000073!1.02e-13!94;UBERON:0001016!1.02e-13!94;UBERON:0004121!1.94e-13!169;UBERON:0000475!3.49e-13!365;UBERON:0000955!5.02e-13!69;UBERON:0006238!5.02e-13!69;UBERON:0000467!5.79e-13!625;UBERON:0000480!9.99e-13!626;UBERON:0002346!1.45e-12!90;UBERON:0000924!2.45e-12!173;UBERON:0006601!2.45e-12!173;UBERON:0000922!4.24e-12!612;UBERON:0003080!6.76e-11!42;UBERON:0002780!9.38e-11!41;UBERON:0001890!9.38e-11!41;UBERON:0006240!9.38e-11!41;UBERON:0003056!3.13e-10!61;UBERON:0002050!1.21e-09!605;UBERON:0005423!1.21e-09!605;UBERON:0000923!1.44e-09!604;UBERON:0005291!1.44e-09!604;UBERON:0006598!1.44e-09!604;UBERON:0002532!1.44e-09!604;UBERON:0002020!2.55e-09!34;UBERON:0003528!2.55e-09!34;UBERON:0000064!3.20e-09!219;UBERON:0001893!3.68e-09!34;UBERON:0002791!4.54e-09!33;UBERON:0001869!1.18e-08!32;UBERON:0000956!1.06e-07!25;UBERON:0000203!1.06e-07!25;UBERON:0000481!1.37e-07!347;UBERON:0002553!5.78e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.37e-09;53!UBERON:0002616;1.37e-09;53!UBERON:0003528;1.88e-09;34!UBERON:0002020;1.88e-09;34!UBERON:0001893;2.58e-09;34!UBERON:0002791;2.86e-09;32!UBERON:0001869;3.38e-09;32!UBERON:0002780;3.93e-09;41!UBERON:0001890;3.93e-09;41!UBERON:0000956;1.30e-08;25!UBERON:0000203;1.30e-08;25!UBERON:0007023;5.45e-08;114!UBERON:0001017;5.98e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.90e-26,114;UBERON:0001017,1.23e-18,81;UBERON:0001049,8.86e-17,56;UBERON:0005068,8.86e-17,56;UBERON:0006241,8.86e-17,56;UBERON:0007135,8.86e-17,56;UBERON:0003075,1.78e-16,82;UBERON:0007284,1.78e-16,82;UBERON:0001016,1.22e-15,89;UBERON:0000073,1.35e-15,53;UBERON:0002616,1.35e-15,53;UBERON:0002346,1.45e-14,86;UBERON:0000955,4.48e-14,68;UBERON:0006238,4.48e-14,68;UBERON:0004121,1.95e-12,171;UBERON:0000924,1.95e-12,171;UBERON:0006601,1.95e-12,171;UBERON:0010371,8.43e-12,104;UBERON:0002780,9.99e-12,41;UBERON:0001890,9.99e-12,41;UBERON:0003080,9.99e-12,41;UBERON:0006240,9.99e-12,41;UBERON:0010314,3.84e-11,132;UBERON:0003056,1.27e-10,61;UBERON:0003528,1.73e-10,34;UBERON:0002020,1.73e-10,34;UBERON:0001893,2.63e-10,34;UBERON:0011216,7.25e-10,223;UBERON:0002791,8.53e-10,32;UBERON:0001869,1.01e-09,32;UBERON:0000956,1.26e-08,25;UBERON:0000203,1.26e-08,25;UBERON:0000922,2.17e-07,592 | |||
|phase1_expression=25.4349730978779,19.0549466262975,9.86680828671798,24.0175916047513,16.0905993993824,11.3404008133048,0,29.0591141776342,13.3204670381918,6.88055022204225,3.48900583986214,25.1207577949698,22.4201931494186,0.495065411840187,1.32558950291166,1.34465029290355,0,0,0,12.3121058076788,8.77202972350288,29.4647438189403,38.6418582626927,22.7211545620988,50.8447690358951,1.22261449196722,1.06730766284929,0.944529375764151,0,0,0.154816123316076,0,0,0,0,0,0,1.66198622559563,2.60707781711184,3.47217393145363,0,0,0,1.74477886535478,1.88937971844405,0,1.39457422143411,0.411167888021826,0.619412741790207,0.28769239232215,0.768482119587302,0.236482229888585,0.689491361473237,0.645484683583826,0,0.376484679085209,0,0,0.918251677112708,0.962787081228281,0.639337125799041,0.989553900560148,0.598390972864896,0,1.7412554317715,1.70215567407342,0.622822248995575,0,0.521482918420201,0.65156653411535,3.63239701580021,0.736555271975129,0,0,0.212604299965044,0.419317291016752,0,0.150176892841506,0,0,0,0,0,0.546138611262131,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,1.40648818027883,0,1.50401373190767,1.15877215168659,2.3858578411533,3.40644409211845,10.3988298880475,8.64744650103999,12.9995482825827,7.72776545436505,0,0.370784442784429,0.649094787309367,0.174129737299267,1.72845348674525,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.39293562831038,0.397227542439656,3.44203944898576,1.41867352879343,3.36406560085384,1.06748995729705,1.97334038733728,0.622422070799533,0.134710672069688,0.326923806226917,4.54072282934794,4.60940739583999,0.468642863667593,1.87296046098192,0.570471821544449,2.83952493048422,0.822041490506354,0,0,0.61246251376468,0.61417158655884,3.40975077880026,0,0.989067717114227,0,0.718618141816238,1.0100166837244,0.250237039743928,0,1.31693286264251,0.919463387397059,2.70428506031874,1.36118619792025,2.87023417102179,3.41691822109708,3.60284231971255,0,0,1.28820270022815,2.23340227597908,6.24472429292685,7.60008640257349,1.51460264546469,1.19664868234989,0.646584227275248,14.5553932931812,3.12331504505685,0.508681776931463,0.966304265816484,1.90922284413584,0.573609190778008,30.6154002385284,52.8793775602726,18.7072248019925,13.4759371519982,20.4379889209259,49.6369208343129,0,1.92972281457866,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,0,0,0.590789906681404,0,0.122988438543114,2.57351715447788,1.97550513735526,0,0,0.462942225792648,0.325808305310325,0,2.88662684050547,6.95582429850461,22.5424692932778,1.29929802984966,0.925971025153221,0,3.1608175918371,0,2.70838706696137,24.8044521047592,15.7549032026052,1.87467667973554,8.90305279453955,3.1190521393325,0.179117045405697,0,0.766765358330422,0,0,0,0,0,0.063497894292169,0.381988425558278,0,1.71072446022705,0,0,0.285826432630578,0.672786506072164,2.1798003441664,0.51336800074665,0.775630294546667,0,0.845302752556,4.78688609852767,2.08014873822732,1.02882949704857,0,0.532844358032199,0.142977993658148,1.62786481617433,0,1.62868092146868,0,0,0.301439377059586,0.871533458600294,0.199945982364114,3.64871341923571,0.502257091432126,12.6500363689819,0.958499421966331,2.29723871668228,21.3955357561078,2.60606352001643,3.28762116080613,5.37182889719687,0,0,0,0,5.59008173289419,1.30139853857622,3.09315525111078,3.51784157202132,3.18969375826582,0,0,0,0.736148950314839,1.00034104211935,0.271265023699736,0.207970861530807,0,0,0,4.8151375956435,9.09630016223939,4.1389228517002,1.32845119707087,1.10621501125022,0.0868836144680828,0.391602314925481,3.77457766191941,0.206768026122887,0.647142602455851,0,0,18.3078983461547,6.35019615992329,24.0664573584214,66.1421104871549,28.6273296321735,14.8641413136613,49.1238959104035,14.6377068240683,5.93672265779964,0,1.24293207719189,0.492762936082855,0,1.16210378459959,0.120859449591622,17.6445693866891,0.368323955743585,0,0,0,10.8287907097779,5.2370429231002,3.13739907670742,5.84556898613043,5.38313307353666,2.27466768141793,0,2.37507507712353,0,1.35473218771926,8.52872615553251,5.09752546090077,4.98645605357235,3.80587083027703,0,0,0.512900250232778,2.62411716559765,0.976135183992909,3.709476419318,10.4389189892911,8.58098799174115,6.3169209179579,2.60024098414608,0,2.41676795730305,2.31072925671967,2.6095624703442,0.827019434907183,2.57808587683857,3.77043404176994,1.70453254832202,4.18450567539666,2.97512847649761,8.26417289669956,2.04180339991335,2.4277867405332,0,0.31481234683064,0,0,0.532306030317022,0,0.18532421910392,0.143124886741991,2.97726695487734,0,0.190630193923825,1.02359116524534,1.28381696410176,0,0,1.79872457583315,0.54907405947211,0.471249609382746,0.202182481573316,0,0,0.975267478179181,0,0,0,0,0,0,0.66343897524122,0,1.15755106853338,0.655894752046633,0.202910376962704,0.6196469961995,0.281695602532241,0.286822704408103,0.687743287091848,0.35667105148125,0.354761064070598,1.47775344708365,1.31717957183961,0.75894634753143,1.049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| |||
|short_description=p2@GPC4 | |||
}} |
Latest revision as of 12:02, 19 September 2015
Short description: | p2@GPC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GPC4_5end |
Coexpression cluster: | C4850_H9_HES3GFP_teratocarcinoma_testicular_Preadipocyte_anaplastic_iPS |
Association with transcript: | 44bp_to_ENST00000370828_5end |
EntrezGene: | GPC4 |
HGNC: | 4452 |
UniProt: | O75487 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.90e-26 | 114 |
central nervous system | 1.23e-18 | 81 |
neural tube | 8.86e-17 | 56 |
neural rod | 8.86e-17 | 56 |
future spinal cord | 8.86e-17 | 56 |
neural keel | 8.86e-17 | 56 |
neural plate | 1.78e-16 | 82 |
presumptive neural plate | 1.78e-16 | 82 |
nervous system | 1.22e-15 | 89 |
regional part of nervous system | 1.35e-15 | 53 |
regional part of brain | 1.35e-15 | 53 |
neurectoderm | 1.45e-14 | 86 |
brain | 4.48e-14 | 68 |
future brain | 4.48e-14 | 68 |
ectoderm-derived structure | 1.95e-12 | 171 |
ectoderm | 1.95e-12 | 171 |
presumptive ectoderm | 1.95e-12 | 171 |
ecto-epithelium | 8.43e-12 | 104 |
regional part of forebrain | 9.99e-12 | 41 |
forebrain | 9.99e-12 | 41 |
anterior neural tube | 9.99e-12 | 41 |
future forebrain | 9.99e-12 | 41 |
structure with developmental contribution from neural crest | 3.84e-11 | 132 |
pre-chordal neural plate | 1.27e-10 | 61 |
brain grey matter | 1.73e-10 | 34 |
gray matter | 1.73e-10 | 34 |
telencephalon | 2.63e-10 | 34 |
organ system subdivision | 7.25e-10 | 223 |
regional part of telencephalon | 8.53e-10 | 32 |
cerebral hemisphere | 1.01e-09 | 32 |
cerebral cortex | 1.26e-08 | 25 |
pallium | 1.26e-08 | 25 |
embryo | 2.17e-07 | 592 |