FFCP PHASE1:Mm9::chr6:83660844..83660859,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=574519|HGNC=|MCL_coexpression_id=488|UniProt=|association_with_transcript=-25bp_to_uc009cnz.1_5end|description=CAGE_peak_1_at_Vax2os1_5end|id=chr6:83660844..83660859,-|ontology_enrichment_celltype=CL:0000192!2.44e-07!3;CL:0000359!2.44e-07!3;CL:0002539!2.44e-07!3;CL:0000514!2.44e-07!3|ontology_enrichment_celltype_v019_2=CL:0000192,1.27e-10,3;CL:0000359,1.27e-10,3;CL:0002539,1.27e-10,3;CL:0000514,1.27e-10,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000970!4.98e-19!9;UBERON:0000019!4.98e-19!9;UBERON:0000047!4.98e-19!9;UBERON:0004088!4.98e-19!9;UBERON:0002104!4.98e-19!9;UBERON:0001456!4.98e-19!9;UBERON:0003072!4.98e-19!9;UBERON:0003071!4.98e-19!9;UBERON:0004128!4.98e-19!9;UBERON:0001444!3.42e-15!11;UBERON:0000020!9.37e-14!12;UBERON:0001032!9.37e-14!12;UBERON:0004456!9.37e-14!12;UBERON:0005085!1.54e-12!13;UBERON:0000014!3.41e-10!5;UBERON:0001003!3.41e-10!5;UBERON:0002097!3.41e-10!5;UBERON:0002199!3.41e-10!5;UBERON:0007029!3.41e-10!5;UBERON:0007376!3.41e-10!5;UBERON:0002416!3.41e-10!5;UBERON:0007383!3.41e-10!5;UBERON:0001135!2.44e-07!3;UBERON:0004237!2.44e-07!3;UBERON:0004695!2.44e-07!3;UBERON:0002111!2.44e-07!3;UBERON:0004178!2.44e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.06e-39,9;UBERON:0000019,1.06e-39,9;UBERON:0000047,1.06e-39,9;UBERON:0010312,1.06e-39,9;UBERON:0004088,1.06e-39,9;UBERON:0002104,1.06e-39,9;UBERON:0001456,1.06e-39,9;UBERON:0003072,1.06e-39,9;UBERON:0004128,1.06e-39,9;UBERON:0003071,1.06e-39,9;UBERON:0001444,1.91e-32,11;UBERON:0000020,1.01e-29,12;UBERON:0001032,1.01e-29,12;UBERON:0004456,1.01e-29,12;UBERON:0000033,2.04e-27,13;UBERON:0005085,2.04e-27,13;UBERON:0001135,1.27e-10,3;UBERON:0004237,1.27e-10,3;UBERON:0004695,1.27e-10,3;UBERON:0002111,1.27e-10,3;UBERON:0004178,1.27e-10,3;UBERON:0007811,1.18e-09,36;UBERON:0003056,4.56e-09,49;UBERON:0000947,3.43e-08,4;UBERON:0001637,3.43e-08,4;UBERON:0004573,3.43e-08,4;UBERON:0003509,3.43e-08,4;UBERON:0004571,3.43e-08,4;UBERON:0010191,3.43e-08,4;UBERON:0004572,3.43e-08,4;UBERON:0000153,5.27e-08,43;UBERON:0010371,1.85e-07,73;UBERON:0002346,8.89e-07,64;UBERON:0003075,8.89e-07,64;UBERON:0007284,8.89e-07,64|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38486499773135,1.72340783073175,0.550640256485045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511290967734173,0.519572009205738,0.35333957451034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05220927943237,4.81445638962004,2.5289231487682,2.34080768746954,2.86339153887859,0.680364991513279,1.15302348256365,1.49922759295566,0.258703370739016,0,0,0.703804496655795,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98067203434441,0,0,0,0,0,0,0,0,0,0.16488625294148,2.09903754704677,0.603129249281559,0.477489376012546,0.492422699235184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0.0762068066549998,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341467211508268,0,0,0.367687016900028,0.44449345560323,0,0,0,0,0,0.280924522409647,0.128050304809739,0.229741875822453,0.476293691283074,0,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.0941093804153306,0.338458431566706,0,0.526139422875686,0.543216455383447,0,0,0.197008964751127,0,0.309873682371932,0.192906610981141,0,1.16965804222704,0,0,0,0|short_description=p1@Vax2os1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=574519 | |||
|HGNC= | |||
|MCL_coexpression_id=488 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-25bp_to_uc009cnz.1_5end | |||
|cluster_id=chr6:83660844..83660859,- | |||
|description=CAGE_peak_1_at_Vax2os1_5end | |||
|id=chr6:83660844..83660859,- | |||
|ontology_enrichment_celltype=CL:0000192!2.44e-07!3;CL:0000359!2.44e-07!3;CL:0002539!2.44e-07!3;CL:0000514!2.44e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.27e-10,3;CL:0000359,1.27e-10,3;CL:0002539,1.27e-10,3;CL:0000514,1.27e-10,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000970!4.98e-19!9;UBERON:0000019!4.98e-19!9;UBERON:0000047!4.98e-19!9;UBERON:0004088!4.98e-19!9;UBERON:0002104!4.98e-19!9;UBERON:0001456!4.98e-19!9;UBERON:0003072!4.98e-19!9;UBERON:0003071!4.98e-19!9;UBERON:0004128!4.98e-19!9;UBERON:0001444!3.42e-15!11;UBERON:0000020!9.37e-14!12;UBERON:0001032!9.37e-14!12;UBERON:0004456!9.37e-14!12;UBERON:0005085!1.54e-12!13;UBERON:0000014!3.41e-10!5;UBERON:0001003!3.41e-10!5;UBERON:0002097!3.41e-10!5;UBERON:0002199!3.41e-10!5;UBERON:0007029!3.41e-10!5;UBERON:0007376!3.41e-10!5;UBERON:0002416!3.41e-10!5;UBERON:0007383!3.41e-10!5;UBERON:0001135!2.44e-07!3;UBERON:0004237!2.44e-07!3;UBERON:0004695!2.44e-07!3;UBERON:0002111!2.44e-07!3;UBERON:0004178!2.44e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.06e-39,9;UBERON:0000019,1.06e-39,9;UBERON:0000047,1.06e-39,9;UBERON:0010312,1.06e-39,9;UBERON:0004088,1.06e-39,9;UBERON:0002104,1.06e-39,9;UBERON:0001456,1.06e-39,9;UBERON:0003072,1.06e-39,9;UBERON:0004128,1.06e-39,9;UBERON:0003071,1.06e-39,9;UBERON:0001444,1.91e-32,11;UBERON:0000020,1.01e-29,12;UBERON:0001032,1.01e-29,12;UBERON:0004456,1.01e-29,12;UBERON:0000033,2.04e-27,13;UBERON:0005085,2.04e-27,13;UBERON:0001135,1.27e-10,3;UBERON:0004237,1.27e-10,3;UBERON:0004695,1.27e-10,3;UBERON:0002111,1.27e-10,3;UBERON:0004178,1.27e-10,3;UBERON:0007811,1.18e-09,36;UBERON:0003056,4.56e-09,49;UBERON:0000947,3.43e-08,4;UBERON:0001637,3.43e-08,4;UBERON:0004573,3.43e-08,4;UBERON:0003509,3.43e-08,4;UBERON:0004571,3.43e-08,4;UBERON:0010191,3.43e-08,4;UBERON:0004572,3.43e-08,4;UBERON:0000153,5.27e-08,43;UBERON:0010371,1.85e-07,73;UBERON:0002346,8.89e-07,64;UBERON:0003075,8.89e-07,64;UBERON:0007284,8.89e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38486499773135,1.72340783073175,0.550640256485045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511290967734173,0.519572009205738,0.35333957451034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05220927943237,4.81445638962004,2.5289231487682,2.34080768746954,2.86339153887859,0.680364991513279,1.15302348256365,1.49922759295566,0.258703370739016,0,0,0.703804496655795,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98067203434441,0,0,0,0,0,0,0,0,0,0.16488625294148,2.09903754704677,0.603129249281559,0.477489376012546,0.492422699235184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0.0762068066549998,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341467211508268,0,0,0.367687016900028,0.44449345560323,0,0,0,0,0,0.280924522409647,0.128050304809739,0.229741875822453,0.476293691283074,0,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.0941093804153306,0.338458431566706,0,0.526139422875686,0.543216455383447,0,0,0.197008964751127,0,0.309873682371932,0.192906610981141,0,1.16965804222704,0,0,0,0 | |||
|short_description=p1@Vax2os1 | |||
}} |
Latest revision as of 19:31, 1 October 2015
Short description: | p1@Vax2os1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vax2os1_5end |
Coexpression cluster: | MCL_coexpression_mm9:488 |
Association with transcript: | -25bp_to_uc009cnz.1_5end |
EntrezGene: | Vax2os1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.27e-10 | 3 |
vascular associated smooth muscle cell | 1.27e-10 | 3 |
aortic smooth muscle cell | 1.27e-10 | 3 |
smooth muscle myoblast | 1.27e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
eye | 1.06e-39 | 9 |
camera-type eye | 1.06e-39 | 9 |
simple eye | 1.06e-39 | 9 |
immature eye | 1.06e-39 | 9 |
ocular region | 1.06e-39 | 9 |
visual system | 1.06e-39 | 9 |
face | 1.06e-39 | 9 |
optic cup | 1.06e-39 | 9 |
optic vesicle | 1.06e-39 | 9 |
eye primordium | 1.06e-39 | 9 |
subdivision of head | 1.91e-32 | 11 |
sense organ | 1.01e-29 | 12 |
sensory system | 1.01e-29 | 12 |
entire sense organ system | 1.01e-29 | 12 |
head | 2.04e-27 | 13 |
ectodermal placode | 2.04e-27 | 13 |
smooth muscle tissue | 1.27e-10 | 3 |
blood vessel smooth muscle | 1.27e-10 | 3 |
arterial system smooth muscle | 1.27e-10 | 3 |
artery smooth muscle tissue | 1.27e-10 | 3 |
aorta smooth muscle tissue | 1.27e-10 | 3 |
craniocervical region | 1.18e-09 | 36 |
pre-chordal neural plate | 4.56e-09 | 49 |
aorta | 3.43e-08 | 4 |
artery | 3.43e-08 | 4 |
systemic artery | 3.43e-08 | 4 |
arterial blood vessel | 3.43e-08 | 4 |
systemic arterial system | 3.43e-08 | 4 |
aortic system | 3.43e-08 | 4 |
arterial system | 3.43e-08 | 4 |
anterior region of body | 5.27e-08 | 43 |
ecto-epithelium | 1.85e-07 | 73 |
neurectoderm | 8.89e-07 | 64 |
neural plate | 8.89e-07 | 64 |
presumptive neural plate | 8.89e-07 | 64 |