FFCP PHASE1:Hg19::chr9:123691439..123691456,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7185 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12031 | |||
|TSSclassifier=strong | |||
|UniProt=Q13077 | |||
|association_with_transcript=0bp_to_ENST00000540010,NM_001190945_5end | |||
|cluster_id=chr9:123691439..123691456,- | |||
|description=CAGE_peak_5_at_TRAF1_5end | |||
|id=chr9:123691439..123691456,- | |||
|ontology_enrichment_celltype=CL:0000738!7.88e-09!140;CL:0002087!1.92e-08!119;CL:0002031!3.91e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000624;8.72e-08;6!CL:0002087;8.23e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,9.90e-14,115;CL:0000738,2.39e-12,136;CL:0002031,6.31e-12,120;CL:0000860,1.27e-10,42;CL:0002057,1.27e-10,42;CL:0000473,1.12e-08,48;CL:0000234,1.12e-08,48;CL:0000988,3.47e-08,177;CL:0000037,5.64e-08,168;CL:0000838,6.33e-08,52;CL:0000624,7.69e-08,6;CL:0000542,1.10e-07,53;CL:0000051,1.10e-07,53;CL:0002032,1.19e-07,161;CL:0000837,1.19e-07,161;CL:0002194,8.81e-07,59;CL:0000576,8.81e-07,59;CL:0000040,8.81e-07,59;CL:0000559,8.81e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.40e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.67e-11!115;UBERON:0001049!2.22e-11!57;UBERON:0005068!2.22e-11!57;UBERON:0006241!2.22e-11!57;UBERON:0007135!2.22e-11!57;UBERON:0002616!1.10e-09!59;UBERON:0002780!2.45e-09!41;UBERON:0001890!2.45e-09!41;UBERON:0006240!2.45e-09!41;UBERON:0003080!9.99e-09!42;UBERON:0003075!1.37e-08!86;UBERON:0007284!1.37e-08!86;UBERON:0002020!2.93e-08!34;UBERON:0003528!2.93e-08!34;UBERON:0001893!3.04e-08!34;UBERON:0002346!4.37e-08!90;UBERON:0002791!6.87e-08!33;UBERON:0001869!2.48e-07!32;UBERON:0005743!2.64e-07!86;UBERON:0000073!3.66e-07!94;UBERON:0001016!3.66e-07!94;UBERON:0000955!3.79e-07!69;UBERON:0006238!3.79e-07!69;UBERON:0001017!4.09e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.05e-08,98;UBERON:0003061,9.05e-08,98;UBERON:0001049,1.70e-07,56;UBERON:0005068,1.70e-07,56;UBERON:0006241,1.70e-07,56;UBERON:0007135,1.70e-07,56;UBERON:0000073,3.47e-07,53;UBERON:0002616,3.47e-07,53;UBERON:0002193,4.60e-07,108 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.704772020479856,0,0.446961094427288,1.74467704820074,0,0,0.522371256399677,0.245733936501509,0,0.218441372130172,0.263766978228454,0.247532705920093,0.994192127183747,0,0,0,0,0.246242116153576,1.42800483870977,0.313454721478088,0.85870796139317,0.136874425072884,0.376627918784408,2.52164238968239,2.13461532569859,1.18066171970519,1.18009283054671,0.767658796194425,0.154816123316076,0,0,0.369754010166788,1.85921281392724,0.426507697462265,0,2.21598163412751,3.60980005446255,3.47217393145363,0.223915474239924,0,0,0,0,0.727752183563449,0.464858073811369,0.822335776043652,0.929119112685311,0.28769239232215,1.5369642391746,0,3.10271112662957,1.93645405075148,2.70852973188684,0.376484679085209,0.545812300115692,0.224723484445085,2.44867113896722,1.28371610830437,1.27867425159808,0.329851300186716,0,0,5.22376629531451,3.40431134814684,4.35975574296902,0.75374599577023,0.521482918420201,0.434377689410233,1.81619850790011,2.57794345191295,4.43047342417238,0.211255286311942,1.06302149982522,0.419317291016752,0,0,0.32145117339416,0,1.39241674039363,0.365328307529268,1.75996244461323,0,0,0,0,0.574752439954483,0,0,0.569212969109448,0.587237189370939,0.382273228125229,1.32171328579026,1.12101712596307,0.263384084775077,0.196709770113833,1.17903228824749,2.05601498999509,2.67498392625085,1.62961133316795,3.78758244587787,0,0.668462741311041,3.24066498222321,1.55073726208535,2.70803863765016,1.92136979588513,1.56071217071854,1.80881695064044,3.03985019564433,0.579606171470105,0.444859689486181,0.535081656179426,2.09071047609954,1.0197840842781,1.53288197440768,0.68725489096526,1.26509846009751,0.95569624297229,0.651083453856419,1.90090408889675,0,0.895906278080929,2.49861453104692,0,0,0.80642697289893,1.87208137048455,0.724122019413995,0,0,0,0.361439152384566,0.50133791063589,0,0.795285947051099,0,0.189069634328136,0.221729397462564,0.175669571386252,0.654895377488563,0.364295288292542,0,0,0.348259474598534,0.26591592103773,0.953962497221368,0.571994910780128,1.11437250398869,0,0,0.347140501607594,0,0,0,0,0.258416759169329,0,0,0,0,0.24406205754817,0,1.62028389576352,0.267899184852239,0.673588117878509,0.337834441449967,1.53316637465883,0,0,0,3.87780264148325,0.436094052142534,0.496971951695318,0.12663051166458,0.132409180813219,0.286836620748814,0,0,1.06748995729705,0.24666754841716,0,0,0.326923806226917,0.454072282934794,0,0.234321431833797,0,0,0.298897361103602,0.23486899728753,1.13311061057692,0,0,0.122834317311768,0,0,0.494533858557114,0,1.43723628363248,0,0.250237039743928,0.277064115484183,0,0,0.300476117813194,0.226864366320042,0.179389635688862,0.640672166455702,0.423863802319124,0.300091096084402,0.412210116953756,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0.184099797284599,0.484938170456436,0.355009592516614,0.403008392910561,0,0.193260853163297,0.545492241181669,0.286804595389004,0.365921118388786,0.265059536642971,0.348581828608555,0.621966330092223,0,0.36497735907583,1.56449532329816,0,1.38134921352481,0.464367928031979,0,0,0,0,0.110293972732394,0,0.237270619111097,0,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0.441463099414651,0,0,0,1.1240175325762,0,0.0925884451585296,0,2.07986957055916,0,0.34779121492523,0.234817388471643,0.288732895522148,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0.335964256397719,0.141775097242386,0,0,0,0,0.264145302039678,0.207328115540772,0.288239906833923,0.6312121671319,0.253991577168676,1.14596527667483,1.17217447210047,0,0.411309970813294,0,0,0.112131084345361,0,0.07333828582095,0.517086863031111,0,0,0,1.04007436911366,0.257207374262142,1.41849132023278,0,0,0.542621605391443,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,1.42636905040718,0.434343920002738,0.61642896765115,0.179060963239896,0.448340575974109,0.788123040807709,1.07813787429759,0.898401253958239,0,0,0,0.167516265334349,0.637938751653163,0,0,0.414415513436035,0,0.500170521059677,0,0.623912584592421,0,0.946214490203608,0.819989904948992,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0.620304078368662,1.07857100409308,0.74709290462411,0.303127571446259,0,0.30239029332968,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,1.48418066444991,0.154209693802656,0,0,0,0.348631135379878,0.241718899183244,0,0.184161977871793,0.114814448164607,0,0.524497659837696,0,0.231046011313244,0.784349769176855,0,0.316654886678627,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0.254876273045038,0.831076008928724,0.671624264166535,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.103041011647722,0.0915694648183434,0,0,0,0,0.096670718292122,0.462145851343933,0.460511024178389,0,0.429680979473094,0.725083469571143,0.340906509664404,0.178064071293475,0.165284915360978,0.576570202095319,0.765676274967505,0,0,0,1.3940745403212,0.308033580176089,0,0,0,0.429374660225974,0.372158369359667,0,0.38126038784765,0.255897791311334,0.42793898803392,0,0.78494864019923,0,0.274537029736055,0.471249609382746,0.202182481573316,0,0,0.4876337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| |||
|short_description=p5@TRAF1 | |||
}} |
Latest revision as of 20:16, 24 September 2015
Short description: | p5@TRAF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TRAF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000540010, NM_001190945_5end |
EntrezGene: | TRAF1 |
HGNC: | 12031 |
UniProt: | Q13077 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 9.90e-14 | 115 |
leukocyte | 2.39e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 6.31e-12 | 120 |
classical monocyte | 1.27e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.27e-10 | 42 |
defensive cell | 1.12e-08 | 48 |
phagocyte | 1.12e-08 | 48 |
hematopoietic cell | 3.47e-08 | 177 |
hematopoietic stem cell | 5.64e-08 | 168 |
lymphoid lineage restricted progenitor cell | 6.33e-08 | 52 |
CD4-positive, alpha-beta T cell | 7.69e-08 | 6 |
lymphocyte | 1.10e-07 | 53 |
common lymphoid progenitor | 1.10e-07 | 53 |
hematopoietic oligopotent progenitor cell | 1.19e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.19e-07 | 161 |
monopoietic cell | 8.81e-07 | 59 |
monocyte | 8.81e-07 | 59 |
monoblast | 8.81e-07 | 59 |
promonocyte | 8.81e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.05e-08 | 98 |
blood island | 9.05e-08 | 98 |
neural tube | 1.70e-07 | 56 |
neural rod | 1.70e-07 | 56 |
future spinal cord | 1.70e-07 | 56 |
neural keel | 1.70e-07 | 56 |
regional part of nervous system | 3.47e-07 | 53 |
regional part of brain | 3.47e-07 | 53 |
hemolymphoid system | 4.60e-07 | 108 |