FFCP PHASE1:Mm9::chr4:82879069..82879081,-: Difference between revisions
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{{FFCP|EntrezGene=69863|HGNC=|MCL_coexpression_id=76|UniProt=|association_with_transcript=0bp_to_ENSMUST00000143362_5end|description=CAGE_peak_8_at_Ttc39b_5end|id=chr4:82879069..82879081,-|ontology_enrichment_celltype=CL:0002609!6.49e-11!6|ontology_enrichment_celltype_v019_2=CL:0002609,1.36e-86,6;CL:0002608,2.45e-43,3;CL:0000117,4.18e-23,23;CL:0000337,4.18e-23,23;CL:0000540,2.90e-16,33;CL:0000047,2.90e-16,33;CL:0000031,2.90e-16,33;CL:0000404,2.90e-16,33;CL:0000393,7.80e-14,39;CL:0000211,7.80e-14,39;CL:0002319,1.38e-12,43;CL:0000221,2.60e-12,44;CL:0000133,2.60e-12,44;CL:0002321,7.20e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000956,3.00e-25,21;UBERON:0001869,3.00e-25,21;UBERON:0000203,3.00e-25,21;UBERON:0001954,4.01e-19,7;UBERON:0003022,4.01e-19,7;UBERON:0002421,4.01e-19,7;UBERON:0000349,4.01e-19,7;UBERON:0002600,4.01e-19,7;UBERON:0003528,1.94e-18,29;UBERON:0002791,1.94e-18,29;UBERON:0001893,1.94e-18,29;UBERON:0002020,8.43e-16,34;UBERON:0002780,7.80e-14,39;UBERON:0001890,7.80e-14,39;UBERON:0006240,7.80e-14,39;UBERON:0003080,1.69e-13,40;UBERON:0002616,8.56e-12,46;UBERON:0000955,1.50e-11,47;UBERON:0006238,1.50e-11,47;UBERON:0003056,4.27e-11,49;UBERON:0001049,1.77e-10,52;UBERON:0005068,1.77e-10,52;UBERON:0006241,1.77e-10,52;UBERON:0007135,1.77e-10,52;UBERON:0000073,4.19e-10,54;UBERON:0002346,1.41e-08,64;UBERON:0003075,1.41e-08,64;UBERON:0007284,1.41e-08,64;UBERON:0002619,2.50e-08,17;UBERON:0010371,1.48e-07,73;UBERON:0001017,1.48e-07,73;UBERON:0001016,2.31e-07,75|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.7468235569969,5.26523159493594,7.99234853135252,0,0,2.57230678351403,1.34183659425531,1.83843757322004,0,0,0,0,0,0,0,0,0,0,0,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.878342391034642,0.41889341362691,0,0,0,0,0,0,0.628271760564322,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0.527853372491847,0.43839146485515,0.278047249225598,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651547837414304,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0.218362563746178,0,0,0,0,0,0,0.299033092087958,0.165458490457098,0,0,0.337912250981556,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0,0.399024873401031,0,0.243106717068294,0.838452650511929,0.183843508450014,0.44449345560323,0.206035057238894,0.320919209591815,0.252697211763798,0.760437899670719,0.377252682772152,0.0936415074698824,0.0640251524048693,0.17230640686684,0.476293691283074,0.347652977834566,0,0.412085900803307,0.147198920134397,0,0,0.715308569841963,0.436039249896986,0.282328141245992,0.338458431566706,0.182927972872773,0.263069711437843,0.407412341537585,0.561142271657738,0.237270036248348,0.197008964751127,0.409231043169689,0,0,0.749431733813838,0.233931608445408,0.429742108096597,0.382576664137687,0,0|short_description=p8@Ttc39b}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=69863 | |||
|HGNC= | |||
|MCL_coexpression_id=76 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000143362_5end | |||
|cluster_id=chr4:82879069..82879081,- | |||
|description=CAGE_peak_8_at_Ttc39b_5end | |||
|id=chr4:82879069..82879081,- | |||
|ontology_enrichment_celltype=CL:0002609!6.49e-11!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,1.36e-86,6;CL:0002608,2.45e-43,3;CL:0000117,4.18e-23,23;CL:0000337,4.18e-23,23;CL:0000540,2.90e-16,33;CL:0000047,2.90e-16,33;CL:0000031,2.90e-16,33;CL:0000404,2.90e-16,33;CL:0000393,7.80e-14,39;CL:0000211,7.80e-14,39;CL:0002319,1.38e-12,43;CL:0000221,2.60e-12,44;CL:0000133,2.60e-12,44;CL:0002321,7.20e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,3.00e-25,21;UBERON:0001869,3.00e-25,21;UBERON:0000203,3.00e-25,21;UBERON:0001954,4.01e-19,7;UBERON:0003022,4.01e-19,7;UBERON:0002421,4.01e-19,7;UBERON:0000349,4.01e-19,7;UBERON:0002600,4.01e-19,7;UBERON:0003528,1.94e-18,29;UBERON:0002791,1.94e-18,29;UBERON:0001893,1.94e-18,29;UBERON:0002020,8.43e-16,34;UBERON:0002780,7.80e-14,39;UBERON:0001890,7.80e-14,39;UBERON:0006240,7.80e-14,39;UBERON:0003080,1.69e-13,40;UBERON:0002616,8.56e-12,46;UBERON:0000955,1.50e-11,47;UBERON:0006238,1.50e-11,47;UBERON:0003056,4.27e-11,49;UBERON:0001049,1.77e-10,52;UBERON:0005068,1.77e-10,52;UBERON:0006241,1.77e-10,52;UBERON:0007135,1.77e-10,52;UBERON:0000073,4.19e-10,54;UBERON:0002346,1.41e-08,64;UBERON:0003075,1.41e-08,64;UBERON:0007284,1.41e-08,64;UBERON:0002619,2.50e-08,17;UBERON:0010371,1.48e-07,73;UBERON:0001017,1.48e-07,73;UBERON:0001016,2.31e-07,75 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.7468235569969,5.26523159493594,7.99234853135252,0,0,2.57230678351403,1.34183659425531,1.83843757322004,0,0,0,0,0,0,0,0,0,0,0,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.878342391034642,0.41889341362691,0,0,0,0,0,0,0.628271760564322,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0.527853372491847,0.43839146485515,0.278047249225598,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651547837414304,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185194527369712,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0.218362563746178,0,0,0,0,0,0,0.299033092087958,0.165458490457098,0,0,0.337912250981556,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0,0.399024873401031,0,0.243106717068294,0.838452650511929,0.183843508450014,0.44449345560323,0.206035057238894,0.320919209591815,0.252697211763798,0.760437899670719,0.377252682772152,0.0936415074698824,0.0640251524048693,0.17230640686684,0.476293691283074,0.347652977834566,0,0.412085900803307,0.147198920134397,0,0,0.715308569841963,0.436039249896986,0.282328141245992,0.338458431566706,0.182927972872773,0.263069711437843,0.407412341537585,0.561142271657738,0.237270036248348,0.197008964751127,0.409231043169689,0,0,0.749431733813838,0.233931608445408,0.429742108096597,0.382576664137687,0,0 | |||
|short_description=p8@Ttc39b | |||
}} |
Latest revision as of 05:58, 27 September 2015
Short description: | p8@Ttc39b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Ttc39b_5end |
Coexpression cluster: | MCL_coexpression_mm9:76 |
Association with transcript: | 0bp_to_ENSMUST00000143362_5end |
EntrezGene: | Ttc39b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 1.36e-86 | 6 |
hippocampal neuron | 2.45e-43 | 3 |
CNS neuron (sensu Vertebrata) | 4.18e-23 | 23 |
neuroblast (sensu Vertebrata) | 4.18e-23 | 23 |
neuron | 2.90e-16 | 33 |
neuronal stem cell | 2.90e-16 | 33 |
neuroblast | 2.90e-16 | 33 |
electrically signaling cell | 2.90e-16 | 33 |
electrically responsive cell | 7.80e-14 | 39 |
electrically active cell | 7.80e-14 | 39 |
neural cell | 1.38e-12 | 43 |
ectodermal cell | 2.60e-12 | 44 |
neurectodermal cell | 2.60e-12 | 44 |
embryonic cell | 7.20e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 3.00e-25 | 21 |
cerebral hemisphere | 3.00e-25 | 21 |
pallium | 3.00e-25 | 21 |
Ammon's horn | 4.01e-19 | 7 |
lobe parts of cerebral cortex | 4.01e-19 | 7 |
hippocampal formation | 4.01e-19 | 7 |
limbic system | 4.01e-19 | 7 |
limbic lobe | 4.01e-19 | 7 |
brain grey matter | 1.94e-18 | 29 |
regional part of telencephalon | 1.94e-18 | 29 |
telencephalon | 1.94e-18 | 29 |
gray matter | 8.43e-16 | 34 |
regional part of forebrain | 7.80e-14 | 39 |
forebrain | 7.80e-14 | 39 |
future forebrain | 7.80e-14 | 39 |
anterior neural tube | 1.69e-13 | 40 |
regional part of brain | 8.56e-12 | 46 |
brain | 1.50e-11 | 47 |
future brain | 1.50e-11 | 47 |
pre-chordal neural plate | 4.27e-11 | 49 |
neural tube | 1.77e-10 | 52 |
neural rod | 1.77e-10 | 52 |
future spinal cord | 1.77e-10 | 52 |
neural keel | 1.77e-10 | 52 |
regional part of nervous system | 4.19e-10 | 54 |
neurectoderm | 1.41e-08 | 64 |
neural plate | 1.41e-08 | 64 |
presumptive neural plate | 1.41e-08 | 64 |
regional part of cerebral cortex | 2.50e-08 | 17 |
ecto-epithelium | 1.48e-07 | 73 |
central nervous system | 1.48e-07 | 73 |
nervous system | 2.31e-07 | 75 |