FFCP PHASE1:Hg19::chr8:23198609..23198642,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4017 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6666 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y4K0 | |||
|association_with_transcript=73bp_to_AF117949_5end | |||
|cluster_id=chr8:23198609..23198642,- | |||
|coexpression_cluster_id=C608 | |||
|description=CAGE_peak_4_at_LOXL2_5end | |||
|id=chr8:23198609..23198642,- | |||
|ontology_enrichment_celltype=CL:0000055!8.27e-29!180;CL:0000222!1.71e-23!119;CL:0000144!6.93e-19!625;CL:0000548!1.73e-18!679;CL:0000004!1.73e-18!679;CL:0000255!1.73e-18!679;CL:0000057!5.13e-18!75;CL:0000012!5.67e-18!682;CL:0002371!6.77e-15!591;CL:0002321!4.21e-14!248;CL:0000183!5.01e-14!59;CL:0000220!7.97e-14!246;CL:0000680!2.31e-13!57;CL:0000056!2.31e-13!57;CL:0000355!2.31e-13!57;CL:0000187!4.79e-13!54;CL:0000003!4.19e-12!722;CL:0000393!8.98e-11!60;CL:0000211!8.98e-11!60;CL:0000192!1.70e-10!42;CL:0000514!1.70e-10!42;CL:0000213!4.25e-10!57;CL:0000215!4.25e-10!57;CL:0000359!1.42e-08!32;CL:0002494!3.19e-08!16;CL:0000048!9.98e-08!430;CL:0002334!2.22e-07!12;CL:0000034!2.87e-07!444;CL:0000723!4.92e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.61e-09;55!CL:0000048;6.23e-09;58!CL:0000723;1.92e-08;61!CL:0000359;8.74e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.48e-12,76;CL:0000048,9.06e-10,427;CL:0000723,2.51e-09,433;CL:0000034,9.30e-09,441;CL:0000359,5.01e-08,32;CL:0000222,5.64e-08,121;CL:0000680,1.16e-07,58;CL:0000056,1.16e-07,58;CL:0000355,1.16e-07,58;CL:0000187,1.84e-07,55;CL:0000192,7.36e-07,43;CL:0000514,7.36e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!8.44e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.61e-12;14!DOID:193;3.71e-08;29!DOID:120;1.34e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.89e-13,14;DOID:193,2.42e-08,29;DOID:120,8.39e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.77e-17!79;UBERON:0007798!1.77e-17!79;UBERON:0004535!3.54e-15!110;UBERON:0000055!2.51e-14!69;UBERON:0001009!4.13e-14!113;UBERON:0001637!4.86e-13!42;UBERON:0003509!4.86e-13!42;UBERON:0004572!4.86e-13!42;UBERON:0001981!5.43e-13!60;UBERON:0007500!5.43e-13!60;UBERON:0004537!5.43e-13!60;UBERON:0006965!5.43e-13!60;UBERON:0004872!8.24e-13!84;UBERON:0000914!3.64e-12!83;UBERON:0002329!3.64e-12!83;UBERON:0003077!3.64e-12!83;UBERON:0003059!3.64e-12!83;UBERON:0007282!3.64e-12!83;UBERON:0009618!3.64e-12!83;UBERON:0007285!3.64e-12!83;UBERON:0004290!1.42e-11!70;UBERON:0001134!1.90e-11!61;UBERON:0002036!1.90e-11!61;UBERON:0003082!1.90e-11!61;UBERON:0002385!2.90e-11!63;UBERON:0001015!2.90e-11!63;UBERON:0000383!2.90e-11!63;UBERON:0003914!5.69e-11!118;UBERON:0000486!3.29e-10!82;UBERON:0000490!3.57e-09!138;UBERON:0004573!2.15e-08!33;UBERON:0004571!2.15e-08!33;UBERON:0005256!2.52e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.23e-10;42!UBERON:0003509;1.23e-10;42!UBERON:0004572;1.23e-10;42!UBERON:0002118;3.16e-08;5!UBERON:0004573;5.92e-08;33!UBERON:0004571;5.92e-08;33!UBERON:0007500;5.44e-07;56!UBERON:0001981;5.44e-07;56!UBERON:0004537;5.44e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.18e-13,42;UBERON:0003509,2.18e-13,42;UBERON:0004572,2.18e-13,42;UBERON:0007500,9.75e-11,59;UBERON:0001981,9.75e-11,59;UBERON:0004537,9.75e-11,59;UBERON:0006965,9.75e-11,59;UBERON:0004872,1.32e-10,83;UBERON:0002049,1.77e-10,78;UBERON:0007798,1.77e-10,78;UBERON:0000055,2.95e-10,68;UBERON:0003914,1.41e-09,117;UBERON:0004535,1.91e-09,109;UBERON:0004573,4.61e-09,33;UBERON:0004571,4.61e-09,33;UBERON:0001009,6.03e-09,112;UBERON:0002118,1.63e-08,5;UBERON:0007503,1.01e-07,78;UBERON:0002329,1.64e-07,71;UBERON:0003059,1.64e-07,71;UBERON:0007282,1.64e-07,71;UBERON:0004290,1.64e-07,71;UBERON:0009618,1.64e-07,71;UBERON:0003077,2.54e-07,72;UBERON:0007285,2.54e-07,72;UBERON:0007524,3.87e-07,73;UBERON:0001134,8.00e-07,62;UBERON:0002036,8.00e-07,62;UBERON:0003082,8.00e-07,62 | |||
|phase1_expression=0,0.856402095563933,0,0,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0.245733936501509,0,0,0.527533956456907,0.74259811776028,0.662794751455832,3.36162573225888,0,0,1.46379839637152,0.492484232307152,0.612002073732759,0.313454721478088,0,0.821246550437305,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.66221330396589,0,3.00802746381534,1.30361867064741,0,2.43317435151318,0.378139268656271,0.665188192387692,1.05401742831751,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,1.04142150482278,0,3.77549492588915,2.20094433552054,1.46296476575767,0.775250277507987,0.35576626268671,0.66944122552934,0.402829317109147,0,0.24406205754817,0.367663080345869,5.67099363517232,0.535798369704479,0,0.225222960966644,1.53316637465883,0.949265659568129,1.09921046358244,0,0,0,0.993943903390637,0.506522046658319,1.72131935057184,2.86836620748814,0.709336764396714,2.80338800071154,2.1349799145941,3.20667812942308,0.311211035399766,0.404132016209064,0.980771418680752,0.151357427644931,1.72852777344,0.234321431833797,0,0,0.149448680551801,0,0.323745888736263,0,0,0.737005903870608,0.103325781175765,0,1.97813543422845,1.82032272387605,1.43723628363248,0.168336113954066,0.375355559615893,0.277064115484183,0,2.14541457059314,0.600952235626387,0.794025282120147,1.07633781413317,1.49490172172997,0,2.40072876867522,1.23663035086127,2.57640540045629,0.18611685633159,0.843881661206331,0.292311015483596,3.28163906517349,1.19664868234989,0.484938170456436,2.13005755509969,1.10827308050404,0.508681776931463,0,0.272746120590835,0,0.121973706129595,0.265059536642971,0.116193942869518,0.310983165046111,0.504641701751257,0.36497735907583,1.56449532329816,3.85944562915731,1.38134921352481,0.464367928031979,0.721879481669586,0.473227200159376,0.337169380156203,0,0.330881918197182,0,0,0.269662616320329,0,0,0,4.20725321410337,0,0,0,0,0,0,0,1.3725424823882,0,0,0,0,0.651616610620649,0,5.77325368101093,0,0.352226082707465,0.433099343283221,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.224262168690721,1.30788020649984,0.22001485746285,1.16344544182,0,1.690605505112,0.531876233169741,1.04007436911366,0.257207374262142,0,0.266422179016099,1.14382394926518,1.08524321078289,0.823240336780769,0,1.77695974371273,0.791951872933429,0.904318131178758,0.871533458600294,0.499864955910285,0,0,0,0.958499421966331,2.29723871668228,0,0.579125226670317,1.64381058040307,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0.49076596687656,1.00034104211935,0.542530047399471,5.40724239980099,9.63516539504674,7.254311091561,2.10854546986884,0.601892199455438,2.27407504055985,0,0.664225598535437,1.84369168541703,0.260650843404249,0.587403472388222,0.686286847621712,0,0,0,0,0,0,0.744323423456331,0.767309866440312,3.92924132206303,0.768834895534206,0.511707249066704,1.44768529029247,1.48418066444991,1.85051632563187,1.9531789784444,0.246381468041427,2.07701771673448,1.04589340613963,0,0.601519410909855,0,0.68888668898764,1.27463817604702,0.786746489756545,0,0.539107359730903,0,1.46139224653261,0.316654886678627,1.13733384070897,0,0.647747748306418,0,0.541892875087706,2.00675909541941,0.509752546090077,0,1.79099803777743,0,0,0,0.656029291399411,0,0,0,0.082509499920588,0,0,0,0.386682873168488,0.924291702687866,1.22802939780904,1.10269257987624,0.322260734604821,1.59518363305651,0.596586391912706,0.267096106940212,0.165284915360978,0.192190067365106,0,0,0.464845549297286,2.83331112147576,0,1.23213432070436,0,0,0.37064843820784,1.00187420719394,0,0.316379424718726,0.38126038784765,0.255897791311334,0,0.318203247925937,2.35484592059769,0.719489830333259,1.64722217841633,0.942499218765491,0.808729926293264,1.58510321173008,2.94880919367287,0.975267478179181,2.43713489631284,4.22600587027022,0.545999645631943,2.12108147930569,2.26016233240486,1.65409603063837,0,1.31535265576129,0.578775534266688,0,0.811641507850816,0.92947049429925,1.12678241012897,0.143411352204052,0.785992328104969,1.78335525740625,0,2.74439925886963,0.987884678879706,0.75894634753143,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0,4.0435146396035,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.179515288819544,0,0,0.915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,3.58696709697646,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,1.0319161948297,0.0967563312890851,0.0730893170861856,0,0,0,0,0.411125773940253,0.19871461170299,0,0,0.160317640503067,0,1.19885765749278,0,0,0,0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| |||
|short_description=p4@LOXL2 | |||
}} |
Latest revision as of 13:52, 17 September 2015
Short description: | p4@LOXL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LOXL2_5end |
Coexpression cluster: | C608_Smooth_mesenchymal_hepatic_Olfactory_Ewing_basal_Fibroblast |
Association with transcript: | 73bp_to_AF117949_5end |
EntrezGene: | LOXL2 |
HGNC: | 6666 |
UniProt: | Q9Y4K0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.48e-12 | 76 |
multi fate stem cell | 9.06e-10 | 427 |
somatic stem cell | 2.51e-09 | 433 |
stem cell | 9.30e-09 | 441 |
vascular associated smooth muscle cell | 5.01e-08 | 32 |
mesodermal cell | 5.64e-08 | 121 |
muscle precursor cell | 1.16e-07 | 58 |
myoblast | 1.16e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.16e-07 | 58 |
muscle cell | 1.84e-07 | 55 |
smooth muscle cell | 7.36e-07 | 43 |
smooth muscle myoblast | 7.36e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
artery | 2.18e-13 | 42 |
arterial blood vessel | 2.18e-13 | 42 |
arterial system | 2.18e-13 | 42 |
epithelial tube open at both ends | 9.75e-11 | 59 |
blood vessel | 9.75e-11 | 59 |
blood vasculature | 9.75e-11 | 59 |
vascular cord | 9.75e-11 | 59 |
splanchnic layer of lateral plate mesoderm | 1.32e-10 | 83 |
vasculature | 1.77e-10 | 78 |
vascular system | 1.77e-10 | 78 |
vessel | 2.95e-10 | 68 |
epithelial tube | 1.41e-09 | 117 |
cardiovascular system | 1.91e-09 | 109 |
systemic artery | 4.61e-09 | 33 |
systemic arterial system | 4.61e-09 | 33 |
circulatory system | 6.03e-09 | 112 |
right ovary | 1.63e-08 | 5 |
epithelial vesicle | 1.01e-07 | 78 |
somite | 1.64e-07 | 71 |
presomitic mesoderm | 1.64e-07 | 71 |
presumptive segmental plate | 1.64e-07 | 71 |
dermomyotome | 1.64e-07 | 71 |
trunk paraxial mesoderm | 1.64e-07 | 71 |
paraxial mesoderm | 2.54e-07 | 72 |
presumptive paraxial mesoderm | 2.54e-07 | 72 |
dense mesenchyme tissue | 3.87e-07 | 73 |
skeletal muscle tissue | 8.00e-07 | 62 |
striated muscle tissue | 8.00e-07 | 62 |
myotome | 8.00e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.89e-13 | 14 |
reproductive organ cancer | 2.42e-08 | 29 |
female reproductive organ cancer | 8.39e-08 | 27 |