FFCP PHASE1:Mm9::chr4:117559884..117559895,-: Difference between revisions
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{{FFCP|EntrezGene=114143|HGNC=|MCL_coexpression_id=247|UniProt=|association_with_transcript=0bp_to_ENSMUST00000132073_5end|description=CAGE_peak_2_at_Atp6v0b_5end|id=chr4:117559884..117559895,-|ontology_enrichment_celltype=CL:0000055!1.82e-15!50;CL:0000221!9.27e-15!44;CL:0000133!9.27e-15!44;CL:0002319!1.30e-14!43;CL:0000393!2.17e-11!39;CL:0000211!2.17e-11!39;CL:0002321!7.81e-10!70;CL:0000220!7.81e-10!70;CL:0000540!7.83e-10!33;CL:0000047!7.83e-10!33;CL:0000031!7.83e-10!33;CL:0000404!7.83e-10!33;CL:0002371!3.75e-08!118;CL:0000548!2.59e-07!115;CL:0000004!2.59e-07!115;CL:0000255!2.59e-07!115;CL:0000723!3.30e-07!91;CL:0000048!3.30e-07!91;CL:0000144!3.31e-07!121;CL:0000012!3.31e-07!121;CL:0000117!9.70e-07!23;CL:0000337!9.70e-07!23|ontology_enrichment_celltype_v019_2=CL:0000221,6.30e-15,44;CL:0000133,6.30e-15,44;CL:0002319,8.87e-15,43;CL:0000393,1.63e-11,39;CL:0000211,1.63e-11,39;CL:0002321,1.49e-10,70;CL:0000540,6.15e-10,33;CL:0000047,6.15e-10,33;CL:0000031,6.15e-10,33;CL:0000404,6.15e-10,33;CL:0000723,1.36e-07,91;CL:0000048,1.36e-07,91;CL:0000117,8.33e-07,23;CL:0000337,8.33e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.03e-24!75;UBERON:0001016!2.03e-24!75;UBERON:0001017!4.68e-23!73;UBERON:0005743!4.68e-23!73;UBERON:0004121!8.41e-21!102;UBERON:0000924!8.41e-21!102;UBERON:0006601!8.41e-21!102;UBERON:0002346!5.43e-15!71;UBERON:0003075!5.43e-15!71;UBERON:0007284!5.43e-15!71;UBERON:0001049!8.58e-15!52;UBERON:0005068!8.58e-15!52;UBERON:0006241!8.58e-15!52;UBERON:0007135!8.58e-15!52;UBERON:0000955!8.45e-13!50;UBERON:0006238!8.45e-13!50;UBERON:0000033!8.51e-13!63;UBERON:0002020!2.85e-12!34;UBERON:0002616!2.85e-12!49;UBERON:0003056!1.52e-11!49;UBERON:0003080!1.08e-10!40;UBERON:0002780!2.22e-10!39;UBERON:0001890!2.22e-10!39;UBERON:0006240!2.22e-10!39;UBERON:0002791!1.10e-09!29;UBERON:0003528!1.10e-09!29;UBERON:0001893!1.10e-09!29;UBERON:0002021!9.97e-07!10;UBERON:0000411!9.97e-07!10;UBERON:0001950!9.97e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.04e-24,75;UBERON:0001017,2.49e-23,73;UBERON:0004121,6.76e-23,95;UBERON:0000924,6.76e-23,95;UBERON:0006601,6.76e-23,95;UBERON:0002346,1.80e-17,64;UBERON:0003075,1.80e-17,64;UBERON:0007284,1.80e-17,64;UBERON:0010371,1.71e-15,73;UBERON:0000073,4.98e-15,54;UBERON:0001049,5.83e-15,52;UBERON:0005068,5.83e-15,52;UBERON:0006241,5.83e-15,52;UBERON:0007135,5.83e-15,52;UBERON:0000955,1.16e-12,47;UBERON:0006238,1.16e-12,47;UBERON:0002020,2.08e-12,34;UBERON:0002616,4.00e-12,46;UBERON:0003056,1.13e-11,49;UBERON:0003080,8.29e-11,40;UBERON:0002780,1.72e-10,39;UBERON:0001890,1.72e-10,39;UBERON:0006240,1.72e-10,39;UBERON:0010314,1.73e-10,92;UBERON:0003528,8.68e-10,29;UBERON:0002791,8.68e-10,29;UBERON:0001893,8.68e-10,29;UBERON:0002021,8.56e-07,10;UBERON:0000411,8.56e-07,10;UBERON:0001950,8.56e-07,10|phase1_expression=1.92178616525753,1.39590163055744,1.81999695755814,1.81478526784098,0.500895729946347,1.51091344720701,0.467225281191051,0.645616617207881,2.39340827657833,2.10658073689794,1.54096171402954,1.43589886191606,0.513602189793617,0.262261207256992,0.666219523631325,1.21485160433896,0,0.630924330716475,1.50825876966313,1.27316895539409,2.8064285749853,3.17731043842833,1.04479915655574,1.43993180514066,2.75291137280604,3.44539178469012,3.4460959692726,2.15471232685889,1.33016393619462,3.2763916868791,4.43461021310609,0.635030673459631,3.07532393792285,0,0.577703239502549,0.332469290716985,0.408338712524738,5.4409111995798,3.1253413780952,4.71171369576418,6.47054636834116,3.41522742479223,4.85510353031154,3.14742044938943,5.27160042341476,2.20256102594018,3.12956537739216,4.57852828398938,3.95435128922049,6.22175677037707,3.3596741190087,10.062679505548,2.01339127269284,0.725362142011344,0.672187598284928,2.57259436035947,4.87106847895886,3.6097046459421,6.87875966922632,4.7609188134483,3.1691570175309,3.72728985276045,2.66788438833342,13.498495759221,10.8775299882367,15.6305625288142,6.89080254192331,11.9107674649682,2.28117147078651,1.75507719831198,1.68259969081106,9.14083150092171,8.1721360152097,1.10241719293459,1.15014565221884,4.5960939330501,1.10115880999389,4.72443150915195,4.6081959976873,3.82470234417562,4.57438218012048,5.2091337055676,9.49222196604695,9.00420176050688,6.72312290217964,5.30331453852602,5.12538050876771,5.03278503728312,11.0560242266449,6.42358260907677,3.18850937571846,0.860423876981386,4.75979933595425,1.61910957491345,1.94932925234301,3.13618820968135,2.38755514223978,1.53387290320252,3.37721805983729,2.12003744706204,2.67602497575693,2.56652954828636,0,0,1.29894624606728,1.01343946190039,2.02209778005913,1.7127581957859,0.258937883647172,0.890652834388949,1.38788261412909,1.21786191324856,1.61430848079241,2.41156224884196,1.64624189989987,0.753999547978053,3.70792451601561,1.01219549843938,1.76922110389975,1.45590164952668,1.54589062922275,1.93950101254089,1.86391761218122,1.75668478206928,2.51336048176146,2.04365644166873,1.1981512450592,2.39961092397363,2.03312363316904,3.74476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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=114143 | |||
|HGNC= | |||
|MCL_coexpression_id=247 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000132073_5end | |||
|cluster_id=chr4:117559884..117559895,- | |||
|description=CAGE_peak_2_at_Atp6v0b_5end | |||
|id=chr4:117559884..117559895,- | |||
|ontology_enrichment_celltype=CL:0000055!1.82e-15!50;CL:0000221!9.27e-15!44;CL:0000133!9.27e-15!44;CL:0002319!1.30e-14!43;CL:0000393!2.17e-11!39;CL:0000211!2.17e-11!39;CL:0002321!7.81e-10!70;CL:0000220!7.81e-10!70;CL:0000540!7.83e-10!33;CL:0000047!7.83e-10!33;CL:0000031!7.83e-10!33;CL:0000404!7.83e-10!33;CL:0002371!3.75e-08!118;CL:0000548!2.59e-07!115;CL:0000004!2.59e-07!115;CL:0000255!2.59e-07!115;CL:0000723!3.30e-07!91;CL:0000048!3.30e-07!91;CL:0000144!3.31e-07!121;CL:0000012!3.31e-07!121;CL:0000117!9.70e-07!23;CL:0000337!9.70e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.30e-15,44;CL:0000133,6.30e-15,44;CL:0002319,8.87e-15,43;CL:0000393,1.63e-11,39;CL:0000211,1.63e-11,39;CL:0002321,1.49e-10,70;CL:0000540,6.15e-10,33;CL:0000047,6.15e-10,33;CL:0000031,6.15e-10,33;CL:0000404,6.15e-10,33;CL:0000723,1.36e-07,91;CL:0000048,1.36e-07,91;CL:0000117,8.33e-07,23;CL:0000337,8.33e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.03e-24!75;UBERON:0001016!2.03e-24!75;UBERON:0001017!4.68e-23!73;UBERON:0005743!4.68e-23!73;UBERON:0004121!8.41e-21!102;UBERON:0000924!8.41e-21!102;UBERON:0006601!8.41e-21!102;UBERON:0002346!5.43e-15!71;UBERON:0003075!5.43e-15!71;UBERON:0007284!5.43e-15!71;UBERON:0001049!8.58e-15!52;UBERON:0005068!8.58e-15!52;UBERON:0006241!8.58e-15!52;UBERON:0007135!8.58e-15!52;UBERON:0000955!8.45e-13!50;UBERON:0006238!8.45e-13!50;UBERON:0000033!8.51e-13!63;UBERON:0002020!2.85e-12!34;UBERON:0002616!2.85e-12!49;UBERON:0003056!1.52e-11!49;UBERON:0003080!1.08e-10!40;UBERON:0002780!2.22e-10!39;UBERON:0001890!2.22e-10!39;UBERON:0006240!2.22e-10!39;UBERON:0002791!1.10e-09!29;UBERON:0003528!1.10e-09!29;UBERON:0001893!1.10e-09!29;UBERON:0002021!9.97e-07!10;UBERON:0000411!9.97e-07!10;UBERON:0001950!9.97e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.04e-24,75;UBERON:0001017,2.49e-23,73;UBERON:0004121,6.76e-23,95;UBERON:0000924,6.76e-23,95;UBERON:0006601,6.76e-23,95;UBERON:0002346,1.80e-17,64;UBERON:0003075,1.80e-17,64;UBERON:0007284,1.80e-17,64;UBERON:0010371,1.71e-15,73;UBERON:0000073,4.98e-15,54;UBERON:0001049,5.83e-15,52;UBERON:0005068,5.83e-15,52;UBERON:0006241,5.83e-15,52;UBERON:0007135,5.83e-15,52;UBERON:0000955,1.16e-12,47;UBERON:0006238,1.16e-12,47;UBERON:0002020,2.08e-12,34;UBERON:0002616,4.00e-12,46;UBERON:0003056,1.13e-11,49;UBERON:0003080,8.29e-11,40;UBERON:0002780,1.72e-10,39;UBERON:0001890,1.72e-10,39;UBERON:0006240,1.72e-10,39;UBERON:0010314,1.73e-10,92;UBERON:0003528,8.68e-10,29;UBERON:0002791,8.68e-10,29;UBERON:0001893,8.68e-10,29;UBERON:0002021,8.56e-07,10;UBERON:0000411,8.56e-07,10;UBERON:0001950,8.56e-07,10 | |||
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| |||
|short_description=p2@Atp6v0b | |||
}} |
Latest revision as of 05:48, 26 September 2015
Short description: | p2@Atp6v0b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Atp6v0b_5end |
Coexpression cluster: | MCL_coexpression_mm9:247 |
Association with transcript: | 0bp_to_ENSMUST00000132073_5end |
EntrezGene: | Atp6v0b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.30e-15 | 44 |
neurectodermal cell | 6.30e-15 | 44 |
neural cell | 8.87e-15 | 43 |
electrically responsive cell | 1.63e-11 | 39 |
electrically active cell | 1.63e-11 | 39 |
embryonic cell | 1.49e-10 | 70 |
neuron | 6.15e-10 | 33 |
neuronal stem cell | 6.15e-10 | 33 |
neuroblast | 6.15e-10 | 33 |
electrically signaling cell | 6.15e-10 | 33 |
somatic stem cell | 1.36e-07 | 91 |
multi fate stem cell | 1.36e-07 | 91 |
CNS neuron (sensu Vertebrata) | 8.33e-07 | 23 |
neuroblast (sensu Vertebrata) | 8.33e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.04e-24 | 75 |
central nervous system | 2.49e-23 | 73 |
ectoderm-derived structure | 6.76e-23 | 95 |
ectoderm | 6.76e-23 | 95 |
presumptive ectoderm | 6.76e-23 | 95 |
neurectoderm | 1.80e-17 | 64 |
neural plate | 1.80e-17 | 64 |
presumptive neural plate | 1.80e-17 | 64 |
ecto-epithelium | 1.71e-15 | 73 |
regional part of nervous system | 4.98e-15 | 54 |
neural tube | 5.83e-15 | 52 |
neural rod | 5.83e-15 | 52 |
future spinal cord | 5.83e-15 | 52 |
neural keel | 5.83e-15 | 52 |
brain | 1.16e-12 | 47 |
future brain | 1.16e-12 | 47 |
gray matter | 2.08e-12 | 34 |
regional part of brain | 4.00e-12 | 46 |
pre-chordal neural plate | 1.13e-11 | 49 |
anterior neural tube | 8.29e-11 | 40 |
regional part of forebrain | 1.72e-10 | 39 |
forebrain | 1.72e-10 | 39 |
future forebrain | 1.72e-10 | 39 |
structure with developmental contribution from neural crest | 1.73e-10 | 92 |
brain grey matter | 8.68e-10 | 29 |
regional part of telencephalon | 8.68e-10 | 29 |
telencephalon | 8.68e-10 | 29 |
occipital lobe | 8.56e-07 | 10 |
visual cortex | 8.56e-07 | 10 |
neocortex | 8.56e-07 | 10 |