FFCP PHASE1:Mm9::chr4:107973719..107973730,-: Difference between revisions
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{{FFCP|EntrezGene=414872|HGNC=|MCL_coexpression_id=13|UniProt=Q3UFS0|association_with_transcript=-18bp_to_ENSMUST00000043616_5end|description=CAGE_peak_2_at_Zyg11b_5end|id=chr4:107973719..107973730,-|ontology_enrichment_celltype=CL:0000117!4.80e-14!23;CL:0000337!4.80e-14!23;CL:0000540!2.00e-11!33;CL:0000047!2.00e-11!33;CL:0000031!2.00e-11!33;CL:0000404!2.00e-11!33;CL:0000393!7.85e-08!39;CL:0000211!7.85e-08!39;CL:0002319!1.72e-07!43;CL:0000221!2.60e-07!44;CL:0000133!2.60e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,2.19e-14,23;CL:0000337,2.19e-14,23;CL:0000540,1.50e-11,33;CL:0000047,1.50e-11,33;CL:0000031,1.50e-11,33;CL:0000404,1.50e-11,33;CL:0000393,9.61e-08,39;CL:0000211,9.61e-08,39;CL:0002319,1.27e-07,43;CL:0000221,1.93e-07,44;CL:0000133,1.93e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.77e-22!73;UBERON:0005743!1.77e-22!73;UBERON:0001049!5.52e-22!52;UBERON:0005068!5.52e-22!52;UBERON:0006241!5.52e-22!52;UBERON:0007135!5.52e-22!52;UBERON:0000073!7.25e-22!75;UBERON:0001016!7.25e-22!75;UBERON:0000955!7.76e-21!50;UBERON:0006238!7.76e-21!50;UBERON:0000033!9.62e-21!63;UBERON:0002346!1.70e-20!71;UBERON:0003075!1.70e-20!71;UBERON:0007284!1.70e-20!71;UBERON:0002616!2.55e-20!49;UBERON:0003056!2.26e-19!49;UBERON:0004121!6.70e-19!102;UBERON:0000924!6.70e-19!102;UBERON:0006601!6.70e-19!102;UBERON:0002020!9.30e-19!34;UBERON:0003080!2.87e-18!40;UBERON:0002780!1.07e-17!39;UBERON:0001890!1.07e-17!39;UBERON:0006240!1.07e-17!39;UBERON:0002791!8.94e-16!29;UBERON:0003528!8.94e-16!29;UBERON:0001893!8.94e-16!29;UBERON:0007811!1.15e-13!86;UBERON:0000153!2.92e-13!94;UBERON:0000956!2.08e-11!21;UBERON:0001869!2.08e-11!21;UBERON:0000203!2.08e-11!21;UBERON:0002619!3.82e-09!17;UBERON:0000025!4.78e-08!114;UBERON:0002021!8.59e-08!10;UBERON:0000411!8.59e-08!10;UBERON:0001950!8.59e-08!10;UBERON:0004111!9.83e-08!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.54e-24,54;UBERON:0002346,4.73e-24,64;UBERON:0003075,4.73e-24,64;UBERON:0007284,4.73e-24,64;UBERON:0001017,5.23e-23,73;UBERON:0001049,8.16e-23,52;UBERON:0005068,8.16e-23,52;UBERON:0006241,8.16e-23,52;UBERON:0007135,8.16e-23,52;UBERON:0001016,2.23e-22,75;UBERON:0010371,1.53e-21,73;UBERON:0004121,1.14e-20,95;UBERON:0000924,1.14e-20,95;UBERON:0006601,1.14e-20,95;UBERON:0003056,7.38e-20,49;UBERON:0000955,1.27e-19,47;UBERON:0006238,1.27e-19,47;UBERON:0002020,3.16e-19,34;UBERON:0002616,4.22e-19,46;UBERON:0003080,1.01e-18,40;UBERON:0002780,3.89e-18,39;UBERON:0001890,3.89e-18,39;UBERON:0006240,3.89e-18,39;UBERON:0010314,6.11e-18,92;UBERON:0003528,3.66e-16,29;UBERON:0002791,3.66e-16,29;UBERON:0001893,3.66e-16,29;UBERON:0000956,1.12e-11,21;UBERON:0001869,1.12e-11,21;UBERON:0000203,1.12e-11,21;UBERON:0002619,2.37e-09,17;UBERON:0000025,1.26e-08,114;UBERON:0004111,2.93e-08,122;UBERON:0002021,5.80e-08,10;UBERON:0000411,5.80e-08,10;UBERON:0001950,5.80e-08,10|phase1_expression=2.08193501236232,0.697950815278722,0.454999239389536,0.30246421130683,0,1.00727563147134,0.233612640595526,0.387369970324729,0.281577444303333,0,0.171217968225505,0.797721589953364,1.02720437958723,1.04904482902797,0.333109761815663,0.202475267389826,0.699561878128147,0.473193248037357,1.23402990245165,0.42438965179803,3.06155844543851,0.595745707205312,0.522399578277871,0.47997726838022,0.45881856213434,0.57423196411502,1.29228598847722,0.215471232685889,0,0.756090389279792,0.665191531965914,0.635030673459631,0,0,0.866554859253824,0.166234645358492,0.816677425049476,1.67412652294763,0.7813353445238,0.523523743973798,1.76469446409304,1.36609096991689,0.485510353031154,0.503587271902309,0.608261587317087,0.917733760808408,0,1.30815093828268,1.09843091367236,1.55543919259427,1.25987779462826,1.43752564364972,1.51004345451963,0,1.34437519656986,0.514518872071894,2.0057340795713,0.515672092277442,5.26022798234954,9.52183762689659,8.23980824558033,0.677689064138264,1.77858959222228,0.449949858640699,0.988866362566974,0,1.19840044207362,0.768436610643109,7.05089363697648,7.02030879324791,8.83364837675805,8.56952953211411,6.40518768759679,8.20688354740192,5.55903731905771,7.35375029288017,13.2139057199266,8.17198963745201,7.83393319606842,8.04506355154182,6.03818447775904,5.2091337055676,5.30447698102624,8.4414391504752,9.0150966188318,8.54422897873636,8.25755748634797,6.71038004971082,1.51452386666368,1.28471652181535,2.6087803983151,0,0,1.61910957491345,1.29955283489534,1.34408066129201,0.561777680527007,0.681721290312231,1.03914401841148,0.35333957451034,1.40843419776681,3.84979432242953,2.54805239706646,7.11066703153331,0.432982082022428,0.760079596425296,1.01104889002957,0.79928715803342,1.55362730188303,1.48442139064825,1.56136794089522,0.608930956624282,0.461230994512117,1.65794904607885,2.70454026412121,1.13099932196708,0.988779870937496,2.02439099687876,0,2.10296904931632,0.883366073841574,0.484875253135222,0,5.27005434620785,7.33063473847093,0.510914110417183,0.958520996047362,0,0.889491589511453,7.18995069143149,5.03250663100489,13.19370697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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=414872 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UFS0 | |||
|association_with_transcript=-18bp_to_ENSMUST00000043616_5end | |||
|cluster_id=chr4:107973719..107973730,- | |||
|description=CAGE_peak_2_at_Zyg11b_5end | |||
|id=chr4:107973719..107973730,- | |||
|ontology_enrichment_celltype=CL:0000117!4.80e-14!23;CL:0000337!4.80e-14!23;CL:0000540!2.00e-11!33;CL:0000047!2.00e-11!33;CL:0000031!2.00e-11!33;CL:0000404!2.00e-11!33;CL:0000393!7.85e-08!39;CL:0000211!7.85e-08!39;CL:0002319!1.72e-07!43;CL:0000221!2.60e-07!44;CL:0000133!2.60e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.19e-14,23;CL:0000337,2.19e-14,23;CL:0000540,1.50e-11,33;CL:0000047,1.50e-11,33;CL:0000031,1.50e-11,33;CL:0000404,1.50e-11,33;CL:0000393,9.61e-08,39;CL:0000211,9.61e-08,39;CL:0002319,1.27e-07,43;CL:0000221,1.93e-07,44;CL:0000133,1.93e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.77e-22!73;UBERON:0005743!1.77e-22!73;UBERON:0001049!5.52e-22!52;UBERON:0005068!5.52e-22!52;UBERON:0006241!5.52e-22!52;UBERON:0007135!5.52e-22!52;UBERON:0000073!7.25e-22!75;UBERON:0001016!7.25e-22!75;UBERON:0000955!7.76e-21!50;UBERON:0006238!7.76e-21!50;UBERON:0000033!9.62e-21!63;UBERON:0002346!1.70e-20!71;UBERON:0003075!1.70e-20!71;UBERON:0007284!1.70e-20!71;UBERON:0002616!2.55e-20!49;UBERON:0003056!2.26e-19!49;UBERON:0004121!6.70e-19!102;UBERON:0000924!6.70e-19!102;UBERON:0006601!6.70e-19!102;UBERON:0002020!9.30e-19!34;UBERON:0003080!2.87e-18!40;UBERON:0002780!1.07e-17!39;UBERON:0001890!1.07e-17!39;UBERON:0006240!1.07e-17!39;UBERON:0002791!8.94e-16!29;UBERON:0003528!8.94e-16!29;UBERON:0001893!8.94e-16!29;UBERON:0007811!1.15e-13!86;UBERON:0000153!2.92e-13!94;UBERON:0000956!2.08e-11!21;UBERON:0001869!2.08e-11!21;UBERON:0000203!2.08e-11!21;UBERON:0002619!3.82e-09!17;UBERON:0000025!4.78e-08!114;UBERON:0002021!8.59e-08!10;UBERON:0000411!8.59e-08!10;UBERON:0001950!8.59e-08!10;UBERON:0004111!9.83e-08!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.54e-24,54;UBERON:0002346,4.73e-24,64;UBERON:0003075,4.73e-24,64;UBERON:0007284,4.73e-24,64;UBERON:0001017,5.23e-23,73;UBERON:0001049,8.16e-23,52;UBERON:0005068,8.16e-23,52;UBERON:0006241,8.16e-23,52;UBERON:0007135,8.16e-23,52;UBERON:0001016,2.23e-22,75;UBERON:0010371,1.53e-21,73;UBERON:0004121,1.14e-20,95;UBERON:0000924,1.14e-20,95;UBERON:0006601,1.14e-20,95;UBERON:0003056,7.38e-20,49;UBERON:0000955,1.27e-19,47;UBERON:0006238,1.27e-19,47;UBERON:0002020,3.16e-19,34;UBERON:0002616,4.22e-19,46;UBERON:0003080,1.01e-18,40;UBERON:0002780,3.89e-18,39;UBERON:0001890,3.89e-18,39;UBERON:0006240,3.89e-18,39;UBERON:0010314,6.11e-18,92;UBERON:0003528,3.66e-16,29;UBERON:0002791,3.66e-16,29;UBERON:0001893,3.66e-16,29;UBERON:0000956,1.12e-11,21;UBERON:0001869,1.12e-11,21;UBERON:0000203,1.12e-11,21;UBERON:0002619,2.37e-09,17;UBERON:0000025,1.26e-08,114;UBERON:0004111,2.93e-08,122;UBERON:0002021,5.80e-08,10;UBERON:0000411,5.80e-08,10;UBERON:0001950,5.80e-08,10 | |||
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| |||
|short_description=p2@Zyg11b | |||
}} |
Latest revision as of 03:18, 26 September 2015
Short description: | p2@Zyg11b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Zyg11b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -18bp_to_ENSMUST00000043616_5end |
EntrezGene: | Zyg11b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.19e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.19e-14 | 23 |
neuron | 1.50e-11 | 33 |
neuronal stem cell | 1.50e-11 | 33 |
neuroblast | 1.50e-11 | 33 |
electrically signaling cell | 1.50e-11 | 33 |
electrically responsive cell | 9.61e-08 | 39 |
electrically active cell | 9.61e-08 | 39 |
neural cell | 1.27e-07 | 43 |
ectodermal cell | 1.93e-07 | 44 |
neurectodermal cell | 1.93e-07 | 44 |