FFCP PHASE1:Mm9::chr2:30837702..30837744,-: Difference between revisions
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{{FFCP|EntrezGene=227707|HGNC=|MCL_coexpression_id=60|UniProt=|association_with_transcript=0bp_to_ENSMUST00000156325_5end|description=CAGE_peak_2_at_BC005624_5end|id=chr2:30837702..30837744,-|ontology_enrichment_celltype=CL:0000117!1.09e-13!23;CL:0000337!1.09e-13!23;CL:0000540!2.53e-10!33;CL:0000047!2.53e-10!33;CL:0000031!2.53e-10!33;CL:0000404!2.53e-10!33;CL:0002319!1.06e-08!43;CL:0000221!1.89e-08!44;CL:0000133!1.89e-08!44;CL:0000393!4.19e-07!39;CL:0000211!4.19e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.36e-14,23;CL:0000337,3.36e-14,23;CL:0000540,1.82e-10,33;CL:0000047,1.82e-10,33;CL:0000031,1.82e-10,33;CL:0000404,1.82e-10,33;CL:0002319,2.27e-08,43;CL:0000221,3.99e-08,44;CL:0000133,3.99e-08,44;CL:0000393,1.67e-07,39;CL:0000211,1.67e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.57e-17!73;UBERON:0005743!2.57e-17!73;UBERON:0000073!1.99e-16!75;UBERON:0001016!1.99e-16!75;UBERON:0001049!6.98e-15!52;UBERON:0005068!6.98e-15!52;UBERON:0006241!6.98e-15!52;UBERON:0007135!6.98e-15!52;UBERON:0000033!6.34e-14!63;UBERON:0000955!1.08e-13!50;UBERON:0006238!1.08e-13!50;UBERON:0002616!1.33e-13!49;UBERON:0002346!2.43e-13!71;UBERON:0003075!2.43e-13!71;UBERON:0007284!2.43e-13!71;UBERON:0003056!5.08e-13!49;UBERON:0002020!9.65e-13!34;UBERON:0004121!2.65e-12!102;UBERON:0000924!2.65e-12!102;UBERON:0006601!2.65e-12!102;UBERON:0003080!8.41e-12!40;UBERON:0002780!2.87e-11!39;UBERON:0001890!2.87e-11!39;UBERON:0006240!2.87e-11!39;UBERON:0002791!2.61e-10!29;UBERON:0003528!2.61e-10!29;UBERON:0001893!2.61e-10!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.23e-17,73;UBERON:0001016,2.50e-16,75;UBERON:0000073,2.75e-16,54;UBERON:0002346,7.70e-16,64;UBERON:0003075,7.70e-16,64;UBERON:0007284,7.70e-16,64;UBERON:0001049,4.93e-15,52;UBERON:0005068,4.93e-15,52;UBERON:0006241,4.93e-15,52;UBERON:0007135,4.93e-15,52;UBERON:0004121,5.13e-14,95;UBERON:0000924,5.13e-14,95;UBERON:0006601,5.13e-14,95;UBERON:0010371,1.13e-13,73;UBERON:0003056,1.84e-13,49;UBERON:0002020,5.98e-13,34;UBERON:0003080,4.61e-12,40;UBERON:0000955,4.63e-12,47;UBERON:0006238,4.63e-12,47;UBERON:0002616,5.78e-12,46;UBERON:0002780,1.65e-11,39;UBERON:0001890,1.65e-11,39;UBERON:0006240,1.65e-11,39;UBERON:0003528,1.99e-10,29;UBERON:0002791,1.99e-10,29;UBERON:0001893,1.99e-10,29;UBERON:0010314,2.06e-10,92|phase1_expression=4.96461426024861,0,0,0.30246421130683,0.500895729946347,0.503637815735669,0.700837921786577,0,0,0,0,0,0,0,1.99865857089398,1.01237633694913,0.699561878128147,0.157731082679119,0.137114433605739,0,3.82694805679814,0.297872853602656,0.783599367416806,0.639969691173627,0.45881856213434,0,0,0,0.380046838912748,0.504060259519861,0.221730510655305,0,0.61506478758457,0,0.866554859253824,0.498703936075477,0.612508068787107,0.837063261473815,1.5626706890476,3.14114246384279,0.588231488031014,0.683045484958446,1.45653105909346,0.503587271902309,0.304130793658544,0.183546752161682,0.782391344348039,2.39827672018491,0.878744730937887,1.36100929351998,5.31948402176378,2.87505128729943,0.335565212115473,0,0,2.05807548828758,1.71920063963254,0,6.67644320836673,8.46385566835253,4.43681982454325,3.38844532069132,4.4464739805557,1.7997994345628,1.97773272513395,0.7104801149461,2.69640099466564,1.53687322128622,3.42175720617976,4.72520784160917,4.83747411108179,5.42736870367227,6.40518768759679,4.5321595709533,6.42164655822184,3.67687514644008,5.50579404996943,6.51205424234457,7.0659005297872,8.17694983927202,8.14240028061446,5.73004707612436,7.2587579740359,7.31591393041184,6.87592114995646,3.83017161115768,3.70166370077668,6.89677949553612,0.757261933331841,1.13357340160178,0,0.860423876981386,0,1.07940638327563,0,0,1.12355536105401,1.70430322578058,1.81850203222008,1.06001872353102,1.26759077799012,0,0,0,0.649473123033642,0.253359865475099,0,0.5709193985953,0.776813650941515,0.593768556259299,1.21439728736295,2.13125834818499,0.691846491768175,2.26083960828934,1.05829836422134,0.879666139307728,0.247194967734374,0.289198713839823,0.884610551949874,3.07357014900077,2.20841518460394,2.42437626567611,0,0.585561594023094,3.14170060220183,0.255457055208591,0.958520996047362,1.19980546198682,1.27070227073065,5.54225365797844,1.83000241127451,5.90575454930463,2.9550134432687,5.62574006126727,4.57133698031032,6.97637431191358,4.27725328171328,1.49288364732112,0.505445516867349,0.210441855886474,2.21204753036596,5.74755261083682,4.14142898552303,4.52114453507145,4.42237244483631,3.97152532883034,2.71735001223214,1.55222022443409,3.01795190105979,2.64748512234947,2.63926686245923,3.28793598641362,2.78047249225598,3.48252166522167,2.26360350048738,3.58261680273288,0,1.54408744268829,1.13665399758237,2.07125772535502,2.11073453982987,3.24111710629827,2.84093682702252,2.16440654922144,1.54267112887378,1.62773761325285,2.68273401399619,0.934122738937356,1.15191894939436,1.47750717671186,0.972825714550269,0.877199924551994,1.53685080703735,0.671032093801859,2.52347938276953,9.15851050175631,0,0.793351699990633,2.559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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=227707 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000156325_5end | |||
|cluster_id=chr2:30837702..30837744,- | |||
|description=CAGE_peak_2_at_BC005624_5end | |||
|id=chr2:30837702..30837744,- | |||
|ontology_enrichment_celltype=CL:0000117!1.09e-13!23;CL:0000337!1.09e-13!23;CL:0000540!2.53e-10!33;CL:0000047!2.53e-10!33;CL:0000031!2.53e-10!33;CL:0000404!2.53e-10!33;CL:0002319!1.06e-08!43;CL:0000221!1.89e-08!44;CL:0000133!1.89e-08!44;CL:0000393!4.19e-07!39;CL:0000211!4.19e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.36e-14,23;CL:0000337,3.36e-14,23;CL:0000540,1.82e-10,33;CL:0000047,1.82e-10,33;CL:0000031,1.82e-10,33;CL:0000404,1.82e-10,33;CL:0002319,2.27e-08,43;CL:0000221,3.99e-08,44;CL:0000133,3.99e-08,44;CL:0000393,1.67e-07,39;CL:0000211,1.67e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.57e-17!73;UBERON:0005743!2.57e-17!73;UBERON:0000073!1.99e-16!75;UBERON:0001016!1.99e-16!75;UBERON:0001049!6.98e-15!52;UBERON:0005068!6.98e-15!52;UBERON:0006241!6.98e-15!52;UBERON:0007135!6.98e-15!52;UBERON:0000033!6.34e-14!63;UBERON:0000955!1.08e-13!50;UBERON:0006238!1.08e-13!50;UBERON:0002616!1.33e-13!49;UBERON:0002346!2.43e-13!71;UBERON:0003075!2.43e-13!71;UBERON:0007284!2.43e-13!71;UBERON:0003056!5.08e-13!49;UBERON:0002020!9.65e-13!34;UBERON:0004121!2.65e-12!102;UBERON:0000924!2.65e-12!102;UBERON:0006601!2.65e-12!102;UBERON:0003080!8.41e-12!40;UBERON:0002780!2.87e-11!39;UBERON:0001890!2.87e-11!39;UBERON:0006240!2.87e-11!39;UBERON:0002791!2.61e-10!29;UBERON:0003528!2.61e-10!29;UBERON:0001893!2.61e-10!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.23e-17,73;UBERON:0001016,2.50e-16,75;UBERON:0000073,2.75e-16,54;UBERON:0002346,7.70e-16,64;UBERON:0003075,7.70e-16,64;UBERON:0007284,7.70e-16,64;UBERON:0001049,4.93e-15,52;UBERON:0005068,4.93e-15,52;UBERON:0006241,4.93e-15,52;UBERON:0007135,4.93e-15,52;UBERON:0004121,5.13e-14,95;UBERON:0000924,5.13e-14,95;UBERON:0006601,5.13e-14,95;UBERON:0010371,1.13e-13,73;UBERON:0003056,1.84e-13,49;UBERON:0002020,5.98e-13,34;UBERON:0003080,4.61e-12,40;UBERON:0000955,4.63e-12,47;UBERON:0006238,4.63e-12,47;UBERON:0002616,5.78e-12,46;UBERON:0002780,1.65e-11,39;UBERON:0001890,1.65e-11,39;UBERON:0006240,1.65e-11,39;UBERON:0003528,1.99e-10,29;UBERON:0002791,1.99e-10,29;UBERON:0001893,1.99e-10,29;UBERON:0010314,2.06e-10,92 | |||
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| |||
|short_description=p2@BC005624 | |||
}} |
Latest revision as of 13:27, 26 September 2015
Short description: | p2@BC005624 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_BC005624_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000156325_5end |
EntrezGene: | BC005624 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.36e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.36e-14 | 23 |
neuron | 1.82e-10 | 33 |
neuronal stem cell | 1.82e-10 | 33 |
neuroblast | 1.82e-10 | 33 |
electrically signaling cell | 1.82e-10 | 33 |
neural cell | 2.27e-08 | 43 |
ectodermal cell | 3.99e-08 | 44 |
neurectodermal cell | 3.99e-08 | 44 |
electrically responsive cell | 1.67e-07 | 39 |
electrically active cell | 1.67e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.23e-17 | 73 |
nervous system | 2.50e-16 | 75 |
regional part of nervous system | 2.75e-16 | 54 |
neurectoderm | 7.70e-16 | 64 |
neural plate | 7.70e-16 | 64 |
presumptive neural plate | 7.70e-16 | 64 |
neural tube | 4.93e-15 | 52 |
neural rod | 4.93e-15 | 52 |
future spinal cord | 4.93e-15 | 52 |
neural keel | 4.93e-15 | 52 |
ectoderm-derived structure | 5.13e-14 | 95 |
ectoderm | 5.13e-14 | 95 |
presumptive ectoderm | 5.13e-14 | 95 |
ecto-epithelium | 1.13e-13 | 73 |
pre-chordal neural plate | 1.84e-13 | 49 |
gray matter | 5.98e-13 | 34 |
anterior neural tube | 4.61e-12 | 40 |
brain | 4.63e-12 | 47 |
future brain | 4.63e-12 | 47 |
regional part of brain | 5.78e-12 | 46 |
regional part of forebrain | 1.65e-11 | 39 |
forebrain | 1.65e-11 | 39 |
future forebrain | 1.65e-11 | 39 |
brain grey matter | 1.99e-10 | 29 |
regional part of telencephalon | 1.99e-10 | 29 |
telencephalon | 1.99e-10 | 29 |
structure with developmental contribution from neural crest | 2.06e-10 | 92 |