FFCP PHASE1:Hg19::chr6:83073511..83073522,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7162 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12004 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=148bp_to_uc010kbj.2_5end | |||
|cluster_id=chr6:83073511..83073522,+ | |||
|coexpression_cluster_id=C1089 | |||
|description=CAGE_peak_6_at_TPBG_5end | |||
|id=chr6:83073511..83073522,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.57e-16!180;CL:0000057!8.50e-11!75;CL:0002321!9.76e-11!248;CL:0000220!2.65e-10!246;CL:0000680!1.49e-09!57;CL:0000056!1.49e-09!57;CL:0000355!1.49e-09!57;CL:0000187!5.94e-09!54;CL:0000183!6.88e-09!59;CL:0000192!9.90e-09!42;CL:0000514!9.90e-09!42;CL:0000393!3.27e-08!60;CL:0000211!3.27e-08!60;CL:0000359!2.13e-07!32;CL:0000066!2.71e-07!254;CL:0002620!3.05e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.49e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.80e-09,250;CL:0000057,2.37e-09,76;CL:0000680,2.34e-07,58;CL:0000056,2.34e-07,58;CL:0000355,2.34e-07,58;CL:0002620,9.62e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.55e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.17e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.07e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.31e-15!365;UBERON:0003102!3.44e-15!95;UBERON:0002100!1.18e-13!216;UBERON:0000468!1.89e-13!659;UBERON:0000486!2.75e-13!82;UBERON:0000914!4.31e-12!83;UBERON:0002329!4.31e-12!83;UBERON:0003077!4.31e-12!83;UBERON:0003059!4.31e-12!83;UBERON:0007282!4.31e-12!83;UBERON:0009618!4.31e-12!83;UBERON:0007285!4.31e-12!83;UBERON:0000481!2.69e-11!347;UBERON:0005256!3.17e-11!143;UBERON:0003104!4.49e-11!238;UBERON:0009142!4.49e-11!238;UBERON:0004290!6.92e-11!70;UBERON:0002385!8.94e-09!63;UBERON:0001015!8.94e-09!63;UBERON:0000383!8.94e-09!63;UBERON:0001134!1.30e-08!61;UBERON:0002036!1.30e-08!61;UBERON:0003082!1.30e-08!61;UBERON:0000467!1.38e-08!625;UBERON:0000480!1.39e-08!626;UBERON:0002097!1.78e-08!40;UBERON:0000119!3.88e-08!312;UBERON:0002199!6.80e-08!45;UBERON:0002416!6.80e-08!45;UBERON:0000483!7.63e-08!309;UBERON:0000922!1.11e-07!612;UBERON:0005156!3.30e-07!59;UBERON:0000990!3.30e-07!59;UBERON:0004923!4.96e-07!57;UBERON:0004119!5.27e-07!169;UBERON:0000925!5.27e-07!169;UBERON:0006595!5.27e-07!169;UBERON:0004573!6.20e-07!33;UBERON:0004571!6.20e-07!33;UBERON:0001637!6.62e-07!42;UBERON:0003509!6.62e-07!42;UBERON:0004572!6.62e-07!42;UBERON:0000464!7.82e-07!104 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,3.77e-12,99;UBERON:0000486,8.73e-11,83;UBERON:0002329,9.08e-09,71;UBERON:0003059,9.08e-09,71;UBERON:0007282,9.08e-09,71;UBERON:0004290,9.08e-09,71;UBERON:0009618,9.08e-09,71;UBERON:0007524,9.10e-09,73;UBERON:0003077,1.77e-08,72;UBERON:0007285,1.77e-08,72;UBERON:0002097,7.83e-08,41;UBERON:0003100,9.93e-08,41;UBERON:0002199,1.92e-07,46;UBERON:0002416,1.92e-07,46;UBERON:0003134,2.38e-07,37;UBERON:0000474,2.38e-07,37;UBERON:0005156,2.55e-07,59;UBERON:0000990,2.55e-07,59;UBERON:0002100,5.83e-07,199;UBERON:0007503,6.23e-07,78;UBERON:0002385,9.09e-07,64;UBERON:0001015,9.09e-07,64;UBERON:0000383,9.09e-07,64;UBERON:0001134,9.72e-07,62;UBERON:0002036,9.72e-07,62;UBERON:0003082,9.72e-07,62 | |||
|phase1_expression=1.09007027562334,1.07050261945492,1.26858963686374,1.0007329835313,0.893922188854576,0,0,0,0.783556884599516,1.72013755551056,0.697801167972428,0.655324116390517,1.05506791291381,1.73272894144065,0.994192127183747,2.6893005858071,1.80808358407193,0.730310090387373,2.43966399395253,0.246242116153576,0.408001382488506,1.88072832886853,0.85870796139317,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0.919421224478927,1.50602959389125,2.21852406100073,0,0,0.293600439334847,0,0,0,0.671746422719773,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,1.53435074212236,0.361439152384566,1.50401373190767,1.73815822752988,0,0.973269740605272,0.661743720148475,0.665188192387692,0.527008714158756,0.196468613246569,4.00724817121796,2.96627554227544,0,0,0.132957960518865,0,0,0,0.39752481473341,0.860234595106124,0.347140501607594,0,1.25849830862972,0.825354125820202,0.208994966536811,0.258416759169329,0.35576626268671,0.33472061276467,0.402829317109147,0,0.488124115096339,0,1.62028389576352,0.267899184852239,0.673588117878509,0.112611480483322,0,0,0.183201743930407,0,0,4.79703457356788,1.49091585508596,1.13967460498122,3.57504788195691,5.44989579422746,1.41867352879343,0.560677600142307,0,0.98667019366864,2.17847724779836,0.67355336034844,0.163461903113459,1.21085942115945,0.576175924479999,1.17160715916898,3.43376084513353,0.570471821544449,1.34503812496621,1.64408298101271,0.809364721840658,1.12360645361799,1.02077085627447,0.61417158655884,1.44656093646072,2.37600571456411,2.71993622206413,0,0.718618141816238,1.0100166837244,1.00094815897571,2.21651292387346,1.75591048352335,0.612975591598039,1.35214253015937,1.47461838108027,2.15267562826634,1.06778694409284,1.69545520927649,3.90118424909723,1.95799805553034,3.09168648054755,1.11670113798954,3.03797398034279,0.876933046450788,2.01947019395292,1.38074847963449,1.93975268182574,3.19508633264953,1.0075209822764,1.01736355386293,0.773043412653187,2.72746120590835,1.43402297694502,2.19552671033272,1.19276791489337,2.09149097165133,3.93912009058408,2.27088765788066,0.36497735907583,1.56449532329816,3.85944562915731,2.76269842704961,1.39310378409594,0,0.236613600079688,0.168584690078102,0.241011029883482,0.441175890929576,0.435758888184812,0.237270619111097,0,0.588664395376038,0.38474715694639,0,0,0.8231480226628,1.47008711385542,0,0,0,0,0.245976877086227,1.20097467208968,1.64625428112938,2.24803506515239,3.01586917234893,3.24059558054854,0.977424915930974,0,0,1.04337364477569,1.6437217193015,0,0,0,1.58040879591855,3.43394464837949,0.246217006087397,0,0,0,0.671928512795438,1.13420077793909,2.95543124919399,3.77824120068151,0.766765358330422,0,0.088048434013226,0.414656231081544,0.288239906833923,0,0.380987365753014,0,0,0,0,0,0,0.897048674762886,1.74384027533312,0.51336800074665,0.904902010304444,0,0,1.32969058292435,0,1.54324424557285,0,0.799266537048298,0.857867961948885,0.542621605391443,0,0.65147236858747,0.710783897485092,4.75171123760058,1.20575750823834,1.74306691720059,2.59929777073348,0,0,0,1.19812427745791,2.29723871668228,0,1.44781306667579,1.02738161275192,1.25342674267927,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,2.69921281782108,1.00034104211935,1.08506009479894,1.03985430765404,1.07057393278297,0.473107245101804,2.34282829985426,0.300946099727719,0,2.0694614258501,0.664225598535437,0.737476674166813,1.65078867489357,1.17480694477644,0.686286847621712,0,0,0,0.303127571446259,1.66435439510497,1.81434175997808,0.744323423456331,1.84154367945675,1.68396056659844,1.40953064181271,0.511707249066704,3.21707842287215,0,1.69630663182921,1.42049380250502,2.05317890034523,1.55776328755086,1.04589340613963,0.241718899183244,2.80709058424599,2.94659164594868,1.37777337797528,1.0925470080403,1.44236856455367,0.902399225814824,0.539107359730903,0.784349769176855,1.46139224653261,0.633309773357254,0,0.340187410553031,0.431831832204279,0,0.812839312631559,0.501689773854853,1.01950509218015,0.831076008928724,1.11937377361089,0,0,0,0.984043937099117,0.325378394664303,0.515205058238611,0.54941678891006,0.577566499444116,1.14853107599234,2.60024098414608,9.64103579064957,3.0934629853479,0.154048617114644,0.921022048356777,0.827019434907183,1.18162269355101,0.580066775656914,1.36362603865761,1.4245125703478,4.62797763010739,4.99694175149276,4.72167036229961,6.4740979747552,0.929691098594572,20.7776148908222,2.7881490806424,2.15623506123262,1.06461206063404,1.73986598415015,1.11194531462352,0.143124886741991,0.744316738719335,1.58189712359363,0.762520775695299,1.79128453917934,0.42793898803392,3.81843897511124,1.56989728039846,0.719489830333259,0.54907405947211,0.824686816419805,1.01091240786658,1.58510321173008,2.52755073743389,1.95053495635836,1.46228093778771,1.05650146756755,1.09199929126389,0.848432591722276,1.13008116620243,1.10273068709225,1.32687795048244,0.876901770507525,1.15755106853338,1.31178950409327,0.608731130888112,1.239293992399,0,1.57752487424457,2.06322986127554,0.7133421029625,1.06428319221179,1.68886108238131,1.97576935775941,2.27683904259429,1.74967360122491,2.02066436723575,0.670302275535787,0,0.564862804660675,3.87454835404107,0,4.43430153536676,1.60806380144872,0,0,0,0,0,0,0,0.79312517629427,0.213648142254946,1.92495971052672,0.980160863924127,0,0,0.0711418433484141,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0.307240764308458,1.78940886313933,0.166849141711909,0,0,1.23087398947712,0.811367035427949,0,0,0.37428108081644,0.586032717087576,0,0,0.852408440419239,5.25237866422918,0.296964680832639,0.921482106297696,0,0,9.57254863196991,0,0,0.796991953004279,0.828851746593443,0,0.306806047506464,0,1.55519793830904,0.449341755736634,1.43216939740487,0,2.36744173528641,0,0,0,0.371072392647405,0,1.30213880542617,0.699679999969566,0,1.4793148277115,0,0.236387681767936,0,0,0.347249989866585,2.65722415744152,0.361789315876224,0,0,0,0.219385397153973,0.10893846351899,1.53366118706464,2.00070672109872,3.76008784295104,0.46112780877612,0.448788222048861,0.108647371922008,3.82801391678303,2.56473261525214,2.66517388009317,0,0.470940769185074,0.166211681900156,0,0,0,0,0,0.632994193584081,0,0,0,0.995261931078505,0.265372693510018,0.611030144933625,0.296521128680622,0,0.104421949505455,0,0,0.937057782901357,0,1.36965233252463,0,0,0,0,0.758238955541855,0.60129367765797,0.518440956986236,0,1.323967823502,1.2557316736289,1.19472429772959,0.284609546029793,0,0.347119476670262,1.27390116638691,1.65412492502765,0.52418000472609,1.20390222730132,0.774050650312681,1.0232504392066,0.739039113478883,2.23074737923365,0,0.451961481561065,0.411125773940253,0.397429223405979,0.316553979779393,0.977756913674015,1.12222348352147,0.85381197895741,0.39961921916426,0.288180834308212,0.916292769327325,4.11827994868715,0.864328787928898,3.60332353139754,1.88555227693436,0.407712618220842,0.418411385249333,0.305994652908965,1.73370353940911,0,0.273810757783986,0,0.429765441419957,0,0.837847203816763,0.229160424011684,0.717873024576814,0,0.429226048136571,0.446342914883745,0.403100834920358,2.16179930125442,0,0,0,0,0.295282444544246,0,0,0,1.44677833618517,1.37539436597234,1.66176135211674,0,0,0.242998226632099,0.670869375198532,0.394028536495991,0.83927341015997,1.5840050477911,0.179287339332845,2.87872795979168,0,0.662091970365432,0,1.62899880526114,0,2.93928624098468,3.59190574687462,0.410462603746695,1.5334921960688,1.24643300672138,0.146552233678082,0,0.129282956361551,0.26446520348538,1.02652102730598,0.704815022316672,0.533937062838473,0.157204305099666,0.414239055347196,0,0.395223263795889,0,2.55336503108073,0,0,0,0,0.314108192500469,0,0.122026264901963,0.3755727921195,0.573409195690071,0.332787154610557,0.869349641179368,0,0.999843263696853,0.303298235083296,0.285465333544967,2.11739237728355,0,0,2.23882204330311,1.40227985908335,0.554805861502613,0.757612021100357,0.754703705257725,0,2.51724075236616,1.20984739010591,2.48699520932449,3.54852359975121,3.66382564476516,2.69881867298163,2.17368139626763,7.87941794897625,3.72178400381193,2.08698024724694,3.00515217994437,5.71207818253193,2.84809513243263,6.36470307208958,5.37052785212442,3.71227007902795,3.18476710958893,0,1.37358282073117,1.6837474438296,0,1.92619830407303,1.28664954824955,2.3489486276869,0,0.231522474323834,0.489473409012935,0.358177682162975,4.32322026025361,1.09642024789354,0,2.70079653579281,0.844712203265363,0,0,0.303859956177382,0,0,0.265729680626726,0.163565394255844,2.94848863961771,1.2288645437686,0.211312123358627,0,0.106691729694141,0,0.567515953566836,0.920529751259204,3.63686720070556,3.73246356019784,0,0,1.72992536041486,0.218419276384028,0.848662649770126,0.212574920101683,0,1.11728983594649,1.90802610392051,0.0788617450012534,0.80057074828547,1.41070377476274,0.918736432059601,0.642292250964595,0,0.159633859057151,0,0,0.484100767249525,0.161475645631851,0,1.07962490351128,3.06721280704125,0.550285795565037,0.808679663052368,0.381382095467167,0.690359926060101,0.198916222116275,0.526472298444801,0.40341013740704,0,0.261906694481422,0.655087670040387,0.295712172434091,0.202612753855184,0,0.206686796501184,0.443910671357348,0,0,0.496211178389294,0.175871244359621,1.78867398695433,0.535701835878287,0,0,0.91064876540519,1.24183318227694,0.691403925334676,0.171488009437418,0.883606528698812,0.460409414939944,0.709163045303809,0.778619813244484,1.72684804271131,0.157115589916002,0.280272163313789,0.913158720509496,0.647782773655864,0.47775168788705,0.500335809236594,0,0,0.695433089210318,1.60342272946051,2.07216164163037,0.6828739083758,1.38251932362818,0.430227358820278,0.946656005844523,0.596493833314104,0.423387050190929,2.2910686854405,1.24082554265728,0,0.223710863595585,0,0.121917924982269,0,0.513314034281235,1.1598144313382,0.485710993059139,0,0.198950775161368,0,0.79062257427272,0,0.754814217833368,0.463044948647668,0,0,1.47088993052343,0.235676547101626,0,0,0.4226557275834,1.86919826156599,0.563903507879121,0.386747327841463,0,2.85686301769052,1.76447435857846,0.0802413666891683,0.730336388246517,0.458729283404541,0.430018749454354,1.10440093535229,0.135982980381829,0,0,1.11598505450025,2.77305377178851,0.432626562123789,0.504665699340316,0.655593431782173,0.633492505057185,0.101988829741982,1.06886962106224,1.37842349302267,1.0028301571695,0.757786982182394,0.535928260312357,0,0.310298987585686,0.426467963801962,1.1903221573187,0.839655827868079,0.372448285775147,0.560659312903067,1.78212043178862,1.0105859447911,1.08858373948481,0.342233301085281,0.875576689189638,1.93649954560226,0.99798106963804,0.89543595472072,0.747091421144008,7.7228912914776,0.988077223172456,0,1.34465588601153,1.22068853494722,1.99727032255654,0.402547587182052,0 | |||
|short_description=p6@TPBG | |||
}} |
Latest revision as of 23:32, 19 September 2015
Short description: | p6@TPBG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TPBG_5end |
Coexpression cluster: | C1089_Smooth_Small_Fibroblast_Prostate_anaplastic_mesenchymal_nasal |
Association with transcript: | 148bp_to_uc010kbj.2_5end |
EntrezGene: | TPBG |
HGNC: | 12004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.80e-09 | 250 |
fibroblast | 2.37e-09 | 76 |
muscle precursor cell | 2.34e-07 | 58 |
myoblast | 2.34e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.34e-07 | 58 |
skin fibroblast | 9.62e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
surface structure | 3.77e-12 | 99 |
multilaminar epithelium | 8.73e-11 | 83 |
somite | 9.08e-09 | 71 |
presomitic mesoderm | 9.08e-09 | 71 |
presumptive segmental plate | 9.08e-09 | 71 |
dermomyotome | 9.08e-09 | 71 |
trunk paraxial mesoderm | 9.08e-09 | 71 |
dense mesenchyme tissue | 9.10e-09 | 73 |
paraxial mesoderm | 1.77e-08 | 72 |
presumptive paraxial mesoderm | 1.77e-08 | 72 |
skin of body | 7.83e-08 | 41 |
female organism | 9.93e-08 | 41 |
integument | 1.92e-07 | 46 |
integumental system | 1.92e-07 | 46 |
female reproductive organ | 2.38e-07 | 37 |
female reproductive system | 2.38e-07 | 37 |
reproductive structure | 2.55e-07 | 59 |
reproductive system | 2.55e-07 | 59 |
trunk | 5.83e-07 | 199 |
epithelial vesicle | 6.23e-07 | 78 |
muscle tissue | 9.09e-07 | 64 |
musculature | 9.09e-07 | 64 |
musculature of body | 9.09e-07 | 64 |
skeletal muscle tissue | 9.72e-07 | 62 |
striated muscle tissue | 9.72e-07 | 62 |
myotome | 9.72e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.07e-11 | 14 |