FFCP PHASE1:Hg19::chr6:56505212..56505242,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr6:56505212..56505242,- | |||
|coexpression_cluster_id=C2561 | |||
|description=CAGE_peak_at_chr6:56505212..56505242,- | |||
|id=chr6:56505212..56505242,- | |||
|ontology_enrichment_celltype=CL:0000223!7.66e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.52e-27;42!CL:0002623;1.46e-22;3!CL:0002251;4.49e-22;20!CL:0000622;8.98e-14;5!CL:0000154;1.45e-11;6!CL:0002231;4.93e-11;3!CL:0002621;8.87e-11;3!CL:0002166;1.05e-10;3!CL:0002368;2.83e-09;13!CL:0002336;2.37e-08;1!CL:0002261;2.37e-08;1!CL:0002170;2.37e-08;1!CL:0000150;7.24e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.72e-31,42;CL:0000223,2.06e-25,58;CL:0002623,1.09e-22,3;CL:0002251,4.26e-22,20;CL:0000622,7.56e-14,5;CL:0000154,1.26e-11,6;CL:0002231,5.06e-11,3;CL:0002621,9.56e-11,3;CL:0002166,1.05e-10,3;CL:0000066,9.51e-10,253;CL:0002368,2.41e-09,13;CL:0002321,9.58e-09,250;CL:0002336,2.29e-08,1;CL:0002261,2.29e-08,1;CL:0002170,2.29e-08,1;CL:0000150,6.59e-08,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.56e-12;58!UBERON:0005425;2.37e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;2.37e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,3.79e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000161!2.80e-08!35;UBERON:0000475!1.19e-07!365;UBERON:0003102!1.30e-07!95;UBERON:0004121!3.36e-07!169;UBERON:0001049!4.49e-07!57;UBERON:0005068!4.49e-07!57;UBERON:0006241!4.49e-07!57;UBERON:0007135!4.49e-07!57;UBERON:0000033!4.76e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;5.44e-18;19!UBERON:0000166;5.44e-18;19!UBERON:0000165;1.86e-15;28!UBERON:0003729;9.44e-14;13!UBERON:0001044;1.45e-11;6!UBERON:0003293;1.45e-11;6!UBERON:0003294;1.45e-11;6!UBERON:0010047;1.45e-11;6!UBERON:0003408;1.45e-11;6!UBERON:0000167;1.45e-11;6!UBERON:0001949;8.87e-11;3!UBERON:0000344;7.16e-09;20!UBERON:0000941;2.37e-08;1!UBERON:0001785;2.37e-08;1!UBERON:0002464;2.37e-08;1!UBERON:0004904;2.37e-08;1!UBERON:0001021;2.37e-08;1!UBERON:0001708;3.06e-08;4!UBERON:0008895;3.06e-08;4!UBERON:0003343;3.80e-08;4!UBERON:0004785;3.80e-08;4!UBERON:0011159;9.42e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,1.92e-15,22;UBERON:0000161,4.23e-15,36;UBERON:0000165,6.68e-15,29;UBERON:0000930,6.68e-15,29;UBERON:0003729,9.98e-14,13;UBERON:0000033,1.07e-13,56;UBERON:0000153,3.49e-12,62;UBERON:0007811,3.49e-12,62;UBERON:0001004,5.63e-12,74;UBERON:0001044,1.26e-11,6;UBERON:0003293,1.26e-11,6;UBERON:0003294,1.26e-11,6;UBERON:0010047,1.26e-11,6;UBERON:0000167,1.26e-11,6;UBERON:0001949,9.56e-11,3;UBERON:0001444,1.45e-10,49;UBERON:0003102,5.42e-10,99;UBERON:0000344,7.41e-09,20;UBERON:0000941,1.71e-08,1;UBERON:0001785,1.71e-08,1;UBERON:0002464,1.71e-08,1;UBERON:0004904,1.71e-08,1;UBERON:0001021,1.71e-08,1;UBERON:0003902,1.71e-08,1;UBERON:0005425,1.71e-08,1;UBERON:0004119,1.81e-08,160;UBERON:0000925,1.81e-08,160;UBERON:0006595,1.81e-08,160;UBERON:0001708,3.06e-08,4;UBERON:0008895,3.06e-08,4;UBERON:0003343,3.94e-08,4;UBERON:0004785,3.94e-08,4;UBERON:0003408,3.69e-07,10;UBERON:0011159,9.43e-07,5 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,1.0007329835313,0.446961094427288,0.872338524100369,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0.273748850145768,0,0.152826811495903,0,0.0787107813136792,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.516833518338658,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0.326923806226917,0.151357427644931,0,0,0,0,0.298897361103602,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.358779271377724,0,0.211931901159562,0.600182192168805,0.206105058476878,0.257640540045629,0.18611685633159,0.506328996723799,0.194874010322397,0.757301322732344,0.276149695926898,0,0.355009592516614,0.604512589365842,0,0.966304265816484,3.00020732649918,2.58124135850103,0,0,0,0.207322110030741,0,0.36497735907583,0,0.643240938192885,0,0,0,0,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86575485194663,0,0.603173834469785,1.20364978706088,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0.93733833986777,2.18376766658517,2.69372684760534,0.447792613514241,1.16253575405585,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.428933980974443,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,0.410952645100767,0,0,0,0,0,1.77866236955724,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,1.07057393278297,0.473107245101804,0,0,0,0,0.664225598535437,0,0.521301686808497,0,0,0,0,0,0,0,0.30239029332968,0,0.306923946576125,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.355123450626254,0.0821271560138091,0,0.116210378459959,0,5.01266175758212,12.430933506346,0.114814448164607,0.182091168006717,0.524497659837696,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.267096106940212,16.1979217053759,3.65161127993702,1.53135254993501,5.0578890427775,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0.855877976067841,0,0,0.179872457583315,0.54907405947211,0.235624804691373,0,0,0,0,0,0,0,0.424216295861138,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,0,0,0.0941438007767792,0,0,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.47748896947538,0,0.307160702099232,0,0.140669416410513,0,0,0,0,0,0,0,0.246169610922139,0.622079175323615,0,0.179021174675609,0,0.197286811273867,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0,0,0.361789315876224,0,0.552896299656123,0.886642856860642,0.438770794307945,0,0.975966209950223,0,0.113942055847001,0,0.179515288819544,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0,0.802577647298789,0.234264445725339,0,0.586993856796269,0.485560759068186,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,1.0319161948297,0,0,0,0,0,0,0,0,0.253243183823515,0.195551382734803,0.0801588202515337,0,0,0,0.229073192331831,0,0,0.248505071130865,0.235694034616795,0,0,0,0.288950589901519,0,0.410716136675979,0,0.429765441419957,0,0.837847203816763,0.229160424011684,0,0,0,0,0,0.360299883542404,1.16495949527454,0.0787831823072236,0,0.13480708770837,0.0984274815147488,0,0.795229689809303,0.408610218334727,0,0.412618309791701,0.415440338029185,0,0,0,0.335434687599266,0,0,0.316801009558219,1.07572403599707,0,0,0,0,0,0,0.326587360109409,0,0.082092520749339,0.340776043570843,0.113312091520126,0.146552233678082,0,0.258565912723101,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,1.22026264901963,0,0.573409195690071,0.110929051536852,0,0.276697269872462,0.249960815924213,0,0,0.235265819698172,0,0.144921028610825,0.298509605773748,0,0,0.378806010550178,0,0.889811221596536,0,0,0,0,0.318593534327405,0,0,0.414706207840855,0,0,0.150257608997218,0.380805212168795,0,0.545545977607678,0.107410557042488,0.464033759878494,0.398095888698616,0.400027764663154,0.343395705182793,0.336749488765919,0,0,0,0,0.226705925512272,0.231522474323834,0.734210113519403,1.25362188757041,0,0.219284049578707,0.706756583783524,0.771656153083659,0.168942440653073,0,0,0.607719912354764,0.553033744606923,0.194860308839388,0,0.163565394255844,0,0.491545817507439,0.211312123358627,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0.6124909547064,0.128458450192919,0,0.798169295285756,0,0.756215088665154,0.0691572524642179,0.645902582527404,1.42769420259154,1.17777262201231,0.11796972334774,3.11828617486854,0.115525666150338,0,0,0,0,0,0,0,0.16377191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| |||
|short_description=p@chr6:56505212..56505242,- | |||
}} |
Latest revision as of 02:31, 31 July 2015
Short description: | p@chr6:56505212..56505242, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:56505212..56505242, - |
Coexpression cluster: | C2561_Prostate_Small_salivary_oral_Bronchial_nasal_squamous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.72e-31 | 42 |
endodermal cell | 2.06e-25 | 58 |
acinar cell of salivary gland | 1.09e-22 | 3 |
epithelial cell of alimentary canal | 4.26e-22 | 20 |
acinar cell | 7.56e-14 | 5 |
protein secreting cell | 1.26e-11 | 6 |
epithelial cell of prostate | 5.06e-11 | 3 |
gingival epithelial cell | 9.56e-11 | 3 |
epithelial cell of Malassez | 1.05e-10 | 3 |
epithelial cell | 9.51e-10 | 253 |
respiratory epithelial cell | 2.41e-09 | 13 |
embryonic cell | 9.58e-09 | 250 |
buccal mucosa cell | 2.29e-08 | 1 |
endothelial cell of viscerocranial mucosa | 2.29e-08 | 1 |
keratinized cell of the oral mucosa | 2.29e-08 | 1 |
glandular epithelial cell | 6.59e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
oral opening | 1.92e-15 | 22 |
orifice | 4.23e-15 | 36 |
mouth | 6.68e-15 | 29 |
stomodeum | 6.68e-15 | 29 |
mouth mucosa | 9.98e-14 | 13 |
head | 1.07e-13 | 56 |
anterior region of body | 3.49e-12 | 62 |
craniocervical region | 3.49e-12 | 62 |
respiratory system | 5.63e-12 | 74 |
saliva-secreting gland | 1.26e-11 | 6 |
gland of oral region | 1.26e-11 | 6 |
gland of foregut | 1.26e-11 | 6 |
oral gland | 1.26e-11 | 6 |
oral cavity | 1.26e-11 | 6 |
gingival epithelium | 9.56e-11 | 3 |
subdivision of head | 1.45e-10 | 49 |
surface structure | 5.42e-10 | 99 |
mucosa | 7.41e-09 | 20 |
cranial nerve II | 1.71e-08 | 1 |
cranial nerve | 1.71e-08 | 1 |
nerve trunk | 1.71e-08 | 1 |
nerve connecting eye with brain | 1.71e-08 | 1 |
nerve | 1.71e-08 | 1 |
retinal neural layer | 1.71e-08 | 1 |
presumptive neural retina | 1.71e-08 | 1 |
endoderm-derived structure | 1.81e-08 | 160 |
endoderm | 1.81e-08 | 160 |
presumptive endoderm | 1.81e-08 | 160 |
jaw skeleton | 3.06e-08 | 4 |
splanchnocranium | 3.06e-08 | 4 |
mucosa of oral region | 3.94e-08 | 4 |
respiratory system mucosa | 3.94e-08 | 4 |
gland of gut | 3.69e-07 | 10 |
primary subdivision of cranial skeletal system | 9.43e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 3.79e-08 | 1 |