FFCP PHASE1:Mm9::chr1:75382119..75382176,+: Difference between revisions
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{{FFCP|EntrezGene=11790|HGNC=|MCL_coexpression_id=2|UniProt=Q62407|association_with_transcript=-8bp_to_ENSMUST00000137868,NM_001085370,uc007bpc.1_5end|description=CAGE_peak_5_at_Speg_5end|id=chr1:75382119..75382176,+|ontology_enrichment_celltype=CL:0000117!7.96e-07!23;CL:0000337!7.96e-07!23|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!9.02e-16!34;UBERON:0000955!2.59e-15!50;UBERON:0006238!2.59e-15!50;UBERON:0002791!4.41e-15!29;UBERON:0003528!4.41e-15!29;UBERON:0001893!4.41e-15!29;UBERON:0002616!1.49e-14!49;UBERON:0000033!2.08e-14!63;UBERON:0002346!6.09e-14!71;UBERON:0003075!6.09e-14!71;UBERON:0007284!6.09e-14!71;UBERON:0001049!1.07e-13!52;UBERON:0005068!1.07e-13!52;UBERON:0006241!1.07e-13!52;UBERON:0007135!1.07e-13!52;UBERON:0000956!3.06e-13!21;UBERON:0001869!3.06e-13!21;UBERON:0000203!3.06e-13!21;UBERON:0003056!5.03e-13!49;UBERON:0003080!5.83e-12!40;UBERON:0002780!8.67e-12!39;UBERON:0001890!8.67e-12!39;UBERON:0006240!8.67e-12!39;UBERON:0002021!7.82e-11!10;UBERON:0000411!7.82e-11!10;UBERON:0001950!7.82e-11!10;UBERON:0001017!3.71e-10!73;UBERON:0005743!3.71e-10!73;UBERON:0002619!4.16e-10!17;UBERON:0000073!1.65e-09!75;UBERON:0001016!1.65e-09!75;UBERON:0004121!2.67e-09!102;UBERON:0000924!2.67e-09!102;UBERON:0006601!2.67e-09!102;UBERON:0000153!3.17e-09!94;UBERON:0007811!1.34e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.25e-30,21;UBERON:0001869,1.25e-30,21;UBERON:0000203,1.25e-30,21;UBERON:0002021,1.32e-30,10;UBERON:0000411,1.32e-30,10;UBERON:0001950,1.32e-30,10;UBERON:0003528,1.70e-27,29;UBERON:0002791,1.70e-27,29;UBERON:0001893,1.70e-27,29;UBERON:0002619,7.62e-25,17;UBERON:0002780,1.62e-24,39;UBERON:0001890,1.62e-24,39;UBERON:0006240,1.62e-24,39;UBERON:0003080,8.42e-24,40;UBERON:0002020,6.75e-23,34;UBERON:0000955,5.54e-22,47;UBERON:0006238,5.54e-22,47;UBERON:0000073,1.24e-20,54;UBERON:0002616,3.74e-20,46;UBERON:0003056,1.15e-18,49;UBERON:0001017,2.38e-17,73;UBERON:0001049,2.40e-17,52;UBERON:0005068,2.40e-17,52;UBERON:0006241,2.40e-17,52;UBERON:0007135,2.40e-17,52;UBERON:0001016,9.30e-17,75;UBERON:0002346,2.58e-13,64;UBERON:0003075,2.58e-13,64;UBERON:0007284,2.58e-13,64;UBERON:0004121,3.32e-12,95;UBERON:0000924,3.32e-12,95;UBERON:0006601,3.32e-12,95;UBERON:0010371,3.67e-11,73;UBERON:0010314,5.21e-08,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26766280701236,0,0,0,0,0,0,0,1.8664130215526,1.75507719831198,0.841299845405528,0.571301968807607,0,0.489963196859816,0.479227355091182,0,2.20231761998777,2.29837208553338,0.921639199537461,0,0,0.52091337055676,0.279182999001381,0.56276261003168,1.68078072554491,0.294628585473668,0.284743361598206,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0.173485326766136,0.304465478312141,0.230615497256059,0,0,0.125666591329675,0,0.144599356919912,0,0.323533699894818,0,0,0,0.878342391034642,0.209446706813455,0,0,0,0,0.149790639404823,7.32000964509802,0.502617408451458,9.56033761057521,10.2286182932132,1.24672826735736,4.2182728397617,0,0,0,0,0.260240885925407,0.229902104433473,0.360124259610698,0.30140963567143,0.0680364991513279,0,0.187403449119458,0.258703370739016,0.215567992932842,0.189106080167819,0.703804496655795,0.43839146485515,0.556094498451196,1.39300866608867,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2437757822584,4.21908910755066,0,0,0,0,0,0.403367049246685,0.22237804384487,0.380451252225118,0,0,0,0,0.38992817423824,0,0,0,0.189667900953082,0.114248512609729,0,0,0,0.210407459670956,0.442655759869801,0,0,0.370191491765402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,0.321101179975584,0.234423373184406,0,0.252470927204373,0,0,0,0,0,0,0,0,0,4.81981974632711,0,0.178065603667255,0,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0.209088296014469,0.436725127492355,0.269728692769641,0.247960367176008,0.26175594198403,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386379188064381,0.375364950902364,0,0,0.501572104035363,18.6368108063632,12.4287813856938,20.0513429703789,19.247556422493,12.3314853558716,13.5970901530146,18.9006300064906,9.90706647093285,10.4222754066367,7.7664046762773,0,0,0.682934423016537,1.45864030240976,0.419226325255965,0.919217542250071,0.44449345560323,0.206035057238894,0.64183841918363,1.26348605881899,0.25347929989024,0.377252682772152,0.187283014939765,0.576226371643824,0.516919220600519,0.476293691283074,0.695305955669133,0.192909220463705,0,0.294397840268795,0.342869252385415,0.177475806159338,0.715308569841963,1.0174249164263,0.564656282491984,0.592302255241736,1.09756783723664,1.31534855718921,0.407412341537585,0.561142271657738,0.474540072496697,0.689531376628944,0,0.77468420592983,0.771626443924566,0.249810577937946,0.467863216890817,0.429742108096597,0.57386499620653,0.220591419119515,0|short_description=p5@Speg}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11790 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q62407 | |||
|association_with_transcript=-8bp_to_ENSMUST00000137868,NM_001085370,uc007bpc.1_5end | |||
|cluster_id=chr1:75382119..75382176,+ | |||
|description=CAGE_peak_5_at_Speg_5end | |||
|id=chr1:75382119..75382176,+ | |||
|ontology_enrichment_celltype=CL:0000117!7.96e-07!23;CL:0000337!7.96e-07!23 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!9.02e-16!34;UBERON:0000955!2.59e-15!50;UBERON:0006238!2.59e-15!50;UBERON:0002791!4.41e-15!29;UBERON:0003528!4.41e-15!29;UBERON:0001893!4.41e-15!29;UBERON:0002616!1.49e-14!49;UBERON:0000033!2.08e-14!63;UBERON:0002346!6.09e-14!71;UBERON:0003075!6.09e-14!71;UBERON:0007284!6.09e-14!71;UBERON:0001049!1.07e-13!52;UBERON:0005068!1.07e-13!52;UBERON:0006241!1.07e-13!52;UBERON:0007135!1.07e-13!52;UBERON:0000956!3.06e-13!21;UBERON:0001869!3.06e-13!21;UBERON:0000203!3.06e-13!21;UBERON:0003056!5.03e-13!49;UBERON:0003080!5.83e-12!40;UBERON:0002780!8.67e-12!39;UBERON:0001890!8.67e-12!39;UBERON:0006240!8.67e-12!39;UBERON:0002021!7.82e-11!10;UBERON:0000411!7.82e-11!10;UBERON:0001950!7.82e-11!10;UBERON:0001017!3.71e-10!73;UBERON:0005743!3.71e-10!73;UBERON:0002619!4.16e-10!17;UBERON:0000073!1.65e-09!75;UBERON:0001016!1.65e-09!75;UBERON:0004121!2.67e-09!102;UBERON:0000924!2.67e-09!102;UBERON:0006601!2.67e-09!102;UBERON:0000153!3.17e-09!94;UBERON:0007811!1.34e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.25e-30,21;UBERON:0001869,1.25e-30,21;UBERON:0000203,1.25e-30,21;UBERON:0002021,1.32e-30,10;UBERON:0000411,1.32e-30,10;UBERON:0001950,1.32e-30,10;UBERON:0003528,1.70e-27,29;UBERON:0002791,1.70e-27,29;UBERON:0001893,1.70e-27,29;UBERON:0002619,7.62e-25,17;UBERON:0002780,1.62e-24,39;UBERON:0001890,1.62e-24,39;UBERON:0006240,1.62e-24,39;UBERON:0003080,8.42e-24,40;UBERON:0002020,6.75e-23,34;UBERON:0000955,5.54e-22,47;UBERON:0006238,5.54e-22,47;UBERON:0000073,1.24e-20,54;UBERON:0002616,3.74e-20,46;UBERON:0003056,1.15e-18,49;UBERON:0001017,2.38e-17,73;UBERON:0001049,2.40e-17,52;UBERON:0005068,2.40e-17,52;UBERON:0006241,2.40e-17,52;UBERON:0007135,2.40e-17,52;UBERON:0001016,9.30e-17,75;UBERON:0002346,2.58e-13,64;UBERON:0003075,2.58e-13,64;UBERON:0007284,2.58e-13,64;UBERON:0004121,3.32e-12,95;UBERON:0000924,3.32e-12,95;UBERON:0006601,3.32e-12,95;UBERON:0010371,3.67e-11,73;UBERON:0010314,5.21e-08,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26766280701236,0,0,0,0,0,0,0,1.8664130215526,1.75507719831198,0.841299845405528,0.571301968807607,0,0.489963196859816,0.479227355091182,0,2.20231761998777,2.29837208553338,0.921639199537461,0,0,0.52091337055676,0.279182999001381,0.56276261003168,1.68078072554491,0.294628585473668,0.284743361598206,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0.173485326766136,0.304465478312141,0.230615497256059,0,0,0.125666591329675,0,0.144599356919912,0,0.323533699894818,0,0,0,0.878342391034642,0.209446706813455,0,0,0,0,0.149790639404823,7.32000964509802,0.502617408451458,9.56033761057521,10.2286182932132,1.24672826735736,4.2182728397617,0,0,0,0,0.260240885925407,0.229902104433473,0.360124259610698,0.30140963567143,0.0680364991513279,0,0.187403449119458,0.258703370739016,0.215567992932842,0.189106080167819,0.703804496655795,0.43839146485515,0.556094498451196,1.39300866608867,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2437757822584,4.21908910755066,0,0,0,0,0,0.403367049246685,0.22237804384487,0.380451252225118,0,0,0,0,0.38992817423824,0,0,0,0.189667900953082,0.114248512609729,0,0,0,0.210407459670956,0.442655759869801,0,0,0.370191491765402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,0.321101179975584,0.234423373184406,0,0.252470927204373,0,0,0,0,0,0,0,0,0,4.81981974632711,0,0.178065603667255,0,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0.209088296014469,0.436725127492355,0.269728692769641,0.247960367176008,0.26175594198403,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386379188064381,0.375364950902364,0,0,0.501572104035363,18.6368108063632,12.4287813856938,20.0513429703789,19.247556422493,12.3314853558716,13.5970901530146,18.9006300064906,9.90706647093285,10.4222754066367,7.7664046762773,0,0,0.682934423016537,1.45864030240976,0.419226325255965,0.919217542250071,0.44449345560323,0.206035057238894,0.64183841918363,1.26348605881899,0.25347929989024,0.377252682772152,0.187283014939765,0.576226371643824,0.516919220600519,0.476293691283074,0.695305955669133,0.192909220463705,0,0.294397840268795,0.342869252385415,0.177475806159338,0.715308569841963,1.0174249164263,0.564656282491984,0.592302255241736,1.09756783723664,1.31534855718921,0.407412341537585,0.561142271657738,0.474540072496697,0.689531376628944,0,0.77468420592983,0.771626443924566,0.249810577937946,0.467863216890817,0.429742108096597,0.57386499620653,0.220591419119515,0 | |||
|short_description=p5@Speg | |||
}} |
Latest revision as of 15:27, 1 October 2015
Short description: | p5@Speg |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Speg_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -8bp_to_ENSMUST00000137868, NM_001085370, uc007bpc.1_5end |
EntrezGene: | Speg |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 1.25e-30 | 21 |
cerebral hemisphere | 1.25e-30 | 21 |
pallium | 1.25e-30 | 21 |
occipital lobe | 1.32e-30 | 10 |
visual cortex | 1.32e-30 | 10 |
neocortex | 1.32e-30 | 10 |
brain grey matter | 1.70e-27 | 29 |
regional part of telencephalon | 1.70e-27 | 29 |
telencephalon | 1.70e-27 | 29 |
regional part of cerebral cortex | 7.62e-25 | 17 |
regional part of forebrain | 1.62e-24 | 39 |
forebrain | 1.62e-24 | 39 |
future forebrain | 1.62e-24 | 39 |
anterior neural tube | 8.42e-24 | 40 |
gray matter | 6.75e-23 | 34 |
brain | 5.54e-22 | 47 |
future brain | 5.54e-22 | 47 |
regional part of nervous system | 1.24e-20 | 54 |
regional part of brain | 3.74e-20 | 46 |
pre-chordal neural plate | 1.15e-18 | 49 |
central nervous system | 2.38e-17 | 73 |
neural tube | 2.40e-17 | 52 |
neural rod | 2.40e-17 | 52 |
future spinal cord | 2.40e-17 | 52 |
neural keel | 2.40e-17 | 52 |
nervous system | 9.30e-17 | 75 |
neurectoderm | 2.58e-13 | 64 |
neural plate | 2.58e-13 | 64 |
presumptive neural plate | 2.58e-13 | 64 |
ectoderm-derived structure | 3.32e-12 | 95 |
ectoderm | 3.32e-12 | 95 |
presumptive ectoderm | 3.32e-12 | 95 |
ecto-epithelium | 3.67e-11 | 73 |
structure with developmental contribution from neural crest | 5.21e-08 | 92 |