FFCP PHASE1:Hg19::chr6:36654222..36654237,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr6:36654222..36654237,+ | |||
|coexpression_cluster_id=C672 | |||
|description=CAGE_peak_at_chr6:36654222..36654237,+ | |||
|id=chr6:36654222..36654237,+ | |||
|ontology_enrichment_celltype=CL:0002371!1.12e-15!591;CL:0000144!1.45e-13!625;CL:0000548!3.96e-12!679;CL:0000004!3.96e-12!679;CL:0000255!3.96e-12!679;CL:0000012!1.21e-11!682;CL:0002057!5.11e-11!42;CL:0000860!1.61e-10!45;CL:0000723!2.29e-09!436;CL:0000048!2.42e-09!430;CL:0000034!1.89e-08!444;CL:0000557!1.31e-07!71;CL:0002009!2.06e-07!65;CL:0000055!2.95e-07!180;CL:0000003!6.88e-07!722;CL:0002194!7.13e-07!63;CL:0000576!7.13e-07!63;CL:0000040!7.13e-07!63;CL:0000559!7.13e-07!63;CL:0000839!8.74e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.11e-28;33!CL:0002057;1.11e-28;33!CL:0000473;1.28e-19;39!CL:0000234;1.28e-19;39!CL:0000576;3.94e-14;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.16e-23,42;CL:0002057,1.16e-23,42;CL:0000473,5.22e-20,48;CL:0000234,5.22e-20,48;CL:0002009,1.76e-17,61;CL:0002194,1.66e-16,59;CL:0000576,1.66e-16,59;CL:0000040,1.66e-16,59;CL:0000559,1.66e-16,59;CL:0000557,2.04e-15,67;CL:0000839,3.39e-14,66;CL:0000766,1.41e-12,72;CL:0000763,1.52e-07,108;CL:0000049,1.52e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;4.38e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.88e-09;3!DOID:127;2.88e-09;3!DOID:0060072;4.85e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.43e-09,3;DOID:127,1.43e-09,3;DOID:0060072,2.90e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0003081!2.16e-09!216;UBERON:0002204!1.60e-08!167;UBERON:0002371!6.80e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;8.05e-08;6!UBERON:0002358;8.05e-08;6!UBERON:0003684;8.05e-08;6!UBERON:0001178;8.05e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.14e-13,76;UBERON:0001474,7.90e-13,82;UBERON:0004765,3.50e-11,90;UBERON:0000926,9.43e-11,315;UBERON:0004120,9.43e-11,315;UBERON:0006603,9.43e-11,315;UBERON:0002204,2.57e-10,167;UBERON:0002405,1.37e-09,93;UBERON:0001434,1.65e-09,100;UBERON:0002390,7.79e-09,98;UBERON:0003061,7.79e-09,98;UBERON:0003081,1.80e-08,203;UBERON:0003688,9.72e-08,6;UBERON:0002358,9.72e-08,6;UBERON:0003684,9.72e-08,6;UBERON:0001178,9.72e-08,6;UBERON:0002193,1.52e-07,108 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0.563817616383885,1.0007329835313,2.68176656656373,0,2.53299878168311,1.26343974685366,0.261185628199839,0,1.39560233594486,0,0,0.37129905888014,0,1.34465029290355,0.602694528023977,1.46062018077475,1.95173119516203,0,0.204000691244253,0,0,0.136874425072884,0,0.305653622991805,0.0821005894499457,0,0.786728553697808,0,0.154816123316076,0.919421224478927,0.30120591877825,1.10926203050036,0.0774672005803016,0,0,0,0.601633342410425,0.217010870715852,0,0,0,0.145398238779565,0.377875943688809,0.727752183563449,0.697287110717054,1.23350366406548,1.54853185447552,6.61692502340946,2.30544635876191,3.31075121844019,0.689491361473237,0,4.06279459783025,2.07066573496865,2.18324920046277,0.449446968890169,6.12167784741805,2.88836124368484,1.91801137739712,3.62836430205388,2.99195486432448,3.83602275479425,3.77272010217159,0,2.4912889959823,3.26623264833766,3.12889751052121,4.56096573880745,0,1.10483290796269,0.632924774881769,0.211255286311942,0.425208599930087,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.579386075843295,0,0.973269740605272,0,0.221729397462564,0,0,0,1.11235332835329,0.324547393654683,1.0447784237956,0.930705723632056,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,0.735326160691737,0,0.17859945656816,0,0,0,0,0.366403487860815,0,0,0,0.496971951695318,0.759783069987479,0,0.286836620748814,0.709336764396714,0.560677600142307,2.1349799145941,0.98667019366864,0,0.134710672069688,0,0,0,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,4.75201142912821,0.741800787835671,0,0.718618141816238,0,0,0,0,0,0.600952235626387,0.226864366320042,0.179389635688862,0,0.211931901159562,0.300091096084402,0.309157587715317,0.257640540045629,0.558350568994769,0,0.292311015483596,0.504867548488229,0.0920498986422993,0.323292113637624,0,0.503760491138201,0.169560592310488,0.57978255948989,0,0,0,0,0.116193942869518,0,0,0,0,1.92972281457866,0,0.928735856063958,0.721879481669586,0,0.842923450390509,0,0.110293972732394,0.217879444092406,0,0,0.392442930250692,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0,0.219500570817251,0,0.402115889646523,0.277765335475589,0.651616610620649,1.03993478527958,0,0,0.234817388471643,0.577465791044295,0.925971025153221,0.380508304469197,0.790204397959275,0,0,0,0.148631162288728,0,0.335964256397719,0.283550194484773,0.179117045405697,0,0.383382679165211,0,0.088048434013226,0.414656231081544,0.720599767084807,0.37872730027914,0,0.381988425558278,1.17217447210047,1.71072446022705,0.102827492703324,0.300343057843917,0.285826432630578,0,0,0.22001485746285,0.646358578788889,0,0,0.797814349754612,2.08014873822732,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.299918973546171,0,0.502257091432126,0,0.479249710983165,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.128343036279748,0.76228387266739,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0.813795071099207,0.207970861530807,1.60586089917446,0.788512075169673,0.35142424497814,0.601892199455438,13.6444502433591,4.1389228517002,0,0.184369168541703,0.521301686808497,0.587403472388222,0.343143423810856,0,0.215714200818617,0.320182673410333,0.606255142892519,3.32870879020994,0,1.24053903909388,0.153461973288062,2.52594084989766,1.66580894032411,2.04682899626681,0.965123526861645,0,0.308419387605311,0.355123450626254,0.328508624055237,1.55776328755086,0.348631135379878,0,2.40607764363942,2.4861867012692,0.918515585316854,0.364182336013434,0.917870904715969,0,0.462092022626489,0,1.46139224653261,0.316654886678627,1.13733384070897,0.340187410553031,0.431831832204279,0,0.270946437543853,0.501689773854853,0,1.66215201785745,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0.650060246036521,0,0.386682873168488,0.308097234229289,0,0,0.107420244868274,0.290033387828457,0.0852266274161009,0.623224249527161,0.991709492165869,0.384380134730212,0.255225424989168,1.6185244936888,4.18360994367557,0.31481234683064,0,0.308033580176089,0.532306030317022,0.869932992075073,0.74129687641568,0.572499546967965,0,0,0.190630193923825,0,1.28381696410176,0.318203247925937,0,0.359744915166629,0.823611089208164,0.589062011728432,0.404364963146632,0,0.421258456238981,0,0.487426979262569,0,0.272999822815972,2.54529777516683,0,0,1.32687795048244,2.19225442626881,1.73632660280006,0,0.608731130888112,0.30982349809975,0.281695602532241,0.143411352204052,0.0982490410131212,0.7133421029625,0.354761064070598,0.633322905892992,0.987884678879706,0,0.349934720244983,0.288666338176536,0,0,0,0,1.68471475667626,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0.278406173895242,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0,0,0,1.24415835064723,0.179736702294654,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0.260427761085233,0.0874599999961957,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.21787692703798,0.278847488557207,0,0.227884111694002,0,0.0897576444097721,0,0,0.183195186803725,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0.632994193584081,0,0,0,0,0,0,0,0.247127877893006,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0.901940516486955,0,0,0,0,0,0,0,0.694238953340524,0,0,0.17472666824203,0,0.0967563312890851,0.219267951258557,0,0.387956065953678,0,0.225980740780532,0,0,0,0,0,0,0,0,0.114536596165916,0,0.288109595976299,0,0.471388069233591,0,0.104602846312333,0,0,0,0,0,0,0,0.558564802544508,0,0,0.399358000997982,0.429226048136571,0,0.0671834724867263,0,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0.137539436597234,0.415440338029185,0.2249738915515,1.5476039091159,0,0.335434687599266,0,0,0,0,0,0,0.662091970365432,0,4.3439968140297,1.72844298240254,1.63293680054705,0,0,0.511164065356265,0,0.293104467356165,0,0.258565912723101,0.13223260174269,0,0,0,0.157204305099666,0.414239055347196,0,0.197611631897944,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0.1251909307065,0,0,0,0,0.124980407962107,0,0,0.235265819698172,0,0,0.447764408660622,0.934853239388898,1.10961172300523,0.189403005275089,0.251567901752575,0.889811221596536,1.60188047877847,0.151230923763239,0,0.147855149989634,0,0.899606224327209,0.155262956876259,0,0.53168342911599,0.521745061811734,0,0.761610424337591,0,0.909243296012797,0.644463342254931,0.928067519756987,0,0.800055529326307,0.343395705182793,1.34699795506368,0,0,0,0,0,0.231522474323834,0,0.358177682162975,0.926404341482917,0.438568099157414,0.530067437837643,0.192914038270915,0,0.256241518587947,0.690860683462397,0,0,0.974301544196942,0.398594520940089,0,0,0,0.211312123358627,0.39997479170986,0,0,0.567515953566836,0,0.279759015438889,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,1.41070377476274,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0.225630985047772,0,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0.606965604236632,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0.078493092850514,0.157115589916002,0,0,0.431855182437243,1.43325506366115,0,0.316027223465453,0,0,0.801711364730253,0,0.17071847709395,0,0,0.354996002191696,0.340853619036631,0,0.22910686854405,0,0,0.223710863595585,0.098150233615243,0.121917924982269,0,0.102662806856247,0,0.971421986118279,0,0,0,0,0,0,0.617393264863557,0.218559560503957,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,1.73050624849516,0,0,0.253397002022874,0,0,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0,0,0.0636471582781649,0,0.217716747896961,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0.201273793591026,0.320568492303233 | |||
|short_description=p@chr6:36654222..36654237,+ | |||
}} |
Latest revision as of 01:10, 31 July 2015
Short description: | p@chr6:36654222..36654237, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:36654222..36654237, + |
Coexpression cluster: | C672_CD14_Smooth_Mesenchymal_Placental_Fibroblast_mesenchymal_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.16e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-23 | 42 |
defensive cell | 5.22e-20 | 48 |
phagocyte | 5.22e-20 | 48 |
macrophage dendritic cell progenitor | 1.76e-17 | 61 |
monopoietic cell | 1.66e-16 | 59 |
monocyte | 1.66e-16 | 59 |
monoblast | 1.66e-16 | 59 |
promonocyte | 1.66e-16 | 59 |
granulocyte monocyte progenitor cell | 2.04e-15 | 67 |
myeloid lineage restricted progenitor cell | 3.39e-14 | 66 |
myeloid leukocyte | 1.41e-12 | 72 |
myeloid cell | 1.52e-07 | 108 |
common myeloid progenitor | 1.52e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.14e-13 | 76 |
bone element | 7.90e-13 | 82 |
skeletal element | 3.50e-11 | 90 |
mesoderm | 9.43e-11 | 315 |
mesoderm-derived structure | 9.43e-11 | 315 |
presumptive mesoderm | 9.43e-11 | 315 |
musculoskeletal system | 2.57e-10 | 167 |
immune system | 1.37e-09 | 93 |
skeletal system | 1.65e-09 | 100 |
hematopoietic system | 7.79e-09 | 98 |
blood island | 7.79e-09 | 98 |
lateral plate mesoderm | 1.80e-08 | 203 |
omentum | 9.72e-08 | 6 |
peritoneum | 9.72e-08 | 6 |
abdominal cavity | 9.72e-08 | 6 |
visceral peritoneum | 9.72e-08 | 6 |
hemolymphoid system | 1.52e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.43e-09 | 3 |
leiomyoma | 1.43e-09 | 3 |
benign neoplasm | 2.90e-07 | 4 |