FFCP PHASE1:Hg19::chr6:35181964..35181980,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=222663 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13655 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IX30,Q8NAV8 | |||
|association_with_transcript=-209bp_to_ENST00000394681,NM_152753,uc003okf.1,uc003okg.1_5end | |||
|cluster_id=chr6:35181964..35181980,+ | |||
|coexpression_cluster_id=C519 | |||
|description=CAGE_peak_5_at_SCUBE3_5end | |||
|id=chr6:35181964..35181980,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.83e-14!180;CL:0002334!1.28e-10!12;CL:0000188!9.10e-09!9;CL:0000057!9.55e-09!75;CL:0002620!7.42e-07!23;CL:0000136!7.65e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002334;4.03e-25;12!CL:0002580;9.76e-11;3!CL:0002579;9.96e-10;3!CL:0002620;1.39e-08;23!CL:0000062;4.01e-08;9!CL:0002583;1.44e-07;2!CL:0002617;2.52e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,3.37e-25,12;CL:0000057,1.67e-13,76;CL:0002580,9.06e-11,3;CL:0002579,8.10e-10,3;CL:0000136,5.70e-09,15;CL:0002620,1.84e-08,23;CL:0000134,2.02e-08,354;CL:0000048,2.47e-08,427;CL:0000723,4.78e-08,433;CL:0002320,4.83e-08,361;CL:0000034,1.12e-07,441;CL:0002583,1.53e-07,2;CL:0002617,2.03e-07,2;CL:0000219,2.79e-07,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!1.12e-07!6;UBERON:0002358!1.12e-07!6;UBERON:0003684!1.12e-07!6;UBERON:0001178!1.12e-07!6;UBERON:0002199!3.99e-07!45;UBERON:0002416!3.99e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;4.80e-12;6!UBERON:0002358;4.80e-12;6!UBERON:0003684;4.80e-12;6!UBERON:0001178;4.80e-12;6!UBERON:0000310;5.84e-08;10!UBERON:0004457;6.43e-08;9!UBERON:0000042;6.43e-08;9!UBERON:0001443;3.40e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.12e-12,6;UBERON:0002358,6.12e-12,6;UBERON:0003684,6.12e-12,6;UBERON:0001178,6.12e-12,6;UBERON:0002199,2.44e-09,46;UBERON:0002416,2.44e-09,46;UBERON:0002384,3.58e-08,371;UBERON:0000310,5.10e-08,10;UBERON:0001443,3.01e-07,11 | |||
|phase1_expression=5.4503513781167,2.78330681058278,0.986680828671798,1.0007329835313,1.34088328328186,0.872338524100369,10.1319951267324,0.631719873426831,0,0,0,0,0,0.123766352960047,0.994192127183747,0.672325146451775,0,0,0,0.369363174230364,0,0.626909442956176,0,0,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50668955317945,0.289693037921647,0,0.973269740605272,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.4000744059455,0.12663051166458,0,0,0,1.12135520028461,0,0,0.311211035399766,0,0.326923806226917,0.302714855289863,0.576175924479999,0,0.312160076830321,0,1.04614076386261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0,1.07633781413317,0.427114777637135,0,3.30100205692843,0,1.28820270022815,0.37223371266318,1.35021065793013,1.46155507741798,0.504867548488229,0.276149695926898,0,6.39017266529906,1.5112814734146,2.20428770003634,0,0,0,0.121973706129595,0,0.232387885739037,0.207322110030741,0,0,1.56449532329816,0.643240938192885,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.36669142910475,0,0,0.845302752556,2.12750493267896,2.08014873822732,0.514414748524284,0,2.66422179016099,0,0.542621605391443,0,0.325736184293735,0,0,0,0,0,0,0,0,1.67737398844108,3.44585807502342,2.85273810081437,17.9528820267798,0,0.358121926479791,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0.813795071099207,0,0,0,0.117141414992713,7.82459859292069,2.27407504055985,0,1.99267679560631,2.39679919104214,0.173767228936166,0.195801157462741,0.343143423810856,0,0,0,0,0,0,8.68377327365719,7.82656063769118,6.73584226639377,2.30650468660262,5.11707249066703,1.76939313257968,0,6.01417805830357,4.43904313282818,6.65229963711854,0,8.36714724911707,0.120859449591622,0,0,0.114814448164607,0.728364672026868,1.44236856455367,0,0,0,0,0,0,0,0.431831832204279,0,0.812839312631559,0.501689773854853,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,0,0,0,1.16004861950546,1.3864375540318,0.307007349452259,0.413509717453592,0.429680979473094,0.435050081742686,0.340906509664404,0.712256285173899,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0.636406495851874,0,0,0,0,0.202182481573316,0,0,0,0.731140468893853,0,2.8664981395677,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0.294747123039363,0,1.06428319221179,0.633322905892992,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,2.39097585901284,0,0,0,0,0.933118762985422,0,0,0,0.394573622547734,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0,0,0,0.10893846351899,0.139423744278603,0.230850775511391,0,0,0,0.217294743844016,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0,0,0,0,0,0.171594997861965,0,0.124252535565433,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0.687481272035051,0,0.199679000498991,0.429226048136571,0.669514372325618,0.873385142327441,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.121499113316049,0,0.0788057072991982,1.78345599658994,0,0,0,0,0,0,1.08599920350743,2.5926644736038,0.653174720218818,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0.138348634936231,0,0,0,2.35265819698172,0,0,0.597019211547496,0,1.10961172300523,0.189403005275089,0.754703705257725,4.44905610798268,0,0,0,0,0,0,0,0.414706207840855,2.12673371646396,1.04349012362347,0,0,0,0.181848659202559,0,0,1.59238355479446,0,3.09056134664514,2.02049693259551,1.26184898228651,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22603045457393,0,0,0,0.918736432059601,0,0,0,0,0.504143392443436,0,0,0,0,0,0,0,0,1.3807198521202,0.994581110581374,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0.992422356778588,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0,0.0657727735628491,0,0,0.235479278551542,0,0,0,0,0,0.571812353413251,0,0,0.173858272302579,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0.647428837187895,0,0,0,0,2.98426162742052,0.237840181555137,0,0,0,0.0771741581079447,0.437119121007915,0,0.490296643507811,0,0,0,0,9.0061370784543,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,1.85997509083376,0,3.46101249699031,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.476128862927481,0,0,0,2.3549448562921,1.61693751166575,0,0,0,0.0717222053926763,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p5@SCUBE3 | |||
}} |
Latest revision as of 10:18, 18 September 2015
Short description: | p5@SCUBE3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCUBE3_5end |
Coexpression cluster: | C519_Preadipocyte_Ewing_Myoblast_spindle_Fibroblast_Adipocyte_Osteoblast |
Association with transcript: | -209bp_to_ENST00000394681, NM_152753, uc003okf.1, uc003okg.1_5end |
EntrezGene: | SCUBE3 |
HGNC: | 13655 |
UniProt: | Q8IX30Q8NAV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 3.37e-25 | 12 |
fibroblast | 1.67e-13 | 76 |
preadipocyte of the breast | 9.06e-11 | 3 |
omentum preadipocyte | 8.10e-10 | 3 |
fat cell | 5.70e-09 | 15 |
skin fibroblast | 1.84e-08 | 23 |
mesenchymal cell | 2.02e-08 | 354 |
multi fate stem cell | 2.47e-08 | 427 |
somatic stem cell | 4.78e-08 | 433 |
connective tissue cell | 4.83e-08 | 361 |
stem cell | 1.12e-07 | 441 |
subcutaneous preadipocyte | 1.53e-07 | 2 |
adipocyte of breast | 2.03e-07 | 2 |
motile cell | 2.79e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
omentum | 6.12e-12 | 6 |
peritoneum | 6.12e-12 | 6 |
abdominal cavity | 6.12e-12 | 6 |
visceral peritoneum | 6.12e-12 | 6 |
integument | 2.44e-09 | 46 |
integumental system | 2.44e-09 | 46 |
connective tissue | 3.58e-08 | 371 |
breast | 5.10e-08 | 10 |
chest | 3.01e-07 | 11 |