FFCP PHASE1:Hg19::chr6:32977345..32977394,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3111 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4936 | |||
|TSSclassifier=strong | |||
|UniProt=P06340,F6R133,B4DW77 | |||
|association_with_transcript=0bp_to_ENST00000229829,ENST00000374813,ENST00000450833,ENST00000467465,NM_002119,uc003ocr.2,uc010jui.2,uc010juj.2_5end | |||
|cluster_id=chr6:32977345..32977394,- | |||
|coexpression_cluster_id=C1215 | |||
|description=CAGE_peak_1_at_HLA-DOA_5end | |||
|id=chr6:32977345..32977394,- | |||
|ontology_enrichment_celltype=CL:0000738!3.40e-42!140;CL:0002087!9.76e-41!119;CL:0002031!1.31e-36!124;CL:0000988!1.59e-29!182;CL:0000037!1.99e-29!172;CL:0000566!1.99e-29!172;CL:0002032!1.43e-26!165;CL:0000837!1.43e-26!165;CL:0000542!1.92e-22!53;CL:0000051!1.92e-22!53;CL:0000838!6.05e-22!52;CL:0002009!1.14e-17!65;CL:0000945!4.25e-17!24;CL:0000826!4.25e-17!24;CL:0000557!1.03e-16!71;CL:0002194!2.11e-16!63;CL:0000576!2.11e-16!63;CL:0000040!2.11e-16!63;CL:0000559!2.11e-16!63;CL:0002057!3.65e-16!42;CL:0000766!3.23e-14!76;CL:0000839!6.04e-14!70;CL:0000860!7.04e-14!45;CL:0000236!6.92e-12!14;CL:0000451!9.97e-09!10;CL:0000763!1.62e-08!112;CL:0000049!1.62e-08!112;CL:0000990!2.82e-07!8;CL:0000084!4.46e-07!25;CL:0000827!4.46e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.44e-18;24!CL:0000473;3.59e-14;39!CL:0000234;3.59e-14;39!CL:0000542;4.99e-14;53!CL:0002087;9.31e-14;104!CL:0000860;1.76e-13;33!CL:0002057;1.76e-13;33!CL:0000236;1.83e-12;13!CL:0000576;4.42e-12;48!CL:0000738;6.98e-11;136!CL:0000451;1.01e-09;10!CL:0000990;4.45e-08;8!CL:0000766;7.47e-08;69!CL:0000084;6.12e-07;25!CL:0000988;8.38e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.41e-49,136;CL:0002087,1.93e-48,115;CL:0002031,7.27e-43,120;CL:0000988,1.29e-36,177;CL:0000037,3.07e-36,168;CL:0002032,8.66e-33,161;CL:0000837,8.66e-33,161;CL:0002009,1.43e-23,61;CL:0000542,2.30e-23,53;CL:0000051,2.30e-23,53;CL:0000838,8.33e-23,52;CL:0002194,5.05e-22,59;CL:0000576,5.05e-22,59;CL:0000040,5.05e-22,59;CL:0000559,5.05e-22,59;CL:0000473,9.91e-22,48;CL:0000234,9.91e-22,48;CL:0000557,2.33e-21,67;CL:0000766,1.66e-18,72;CL:0000945,2.52e-18,24;CL:0000826,2.52e-18,24;CL:0000839,4.09e-18,66;CL:0000860,4.17e-18,42;CL:0002057,4.17e-18,42;CL:0000236,2.94e-13,14;CL:0000763,4.29e-12,108;CL:0000049,4.29e-12,108;CL:0000451,1.11e-09,10;CL:0000990,4.86e-08,8;CL:0000084,6.22e-07,25;CL:0000827,6.22e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;4.99e-14;53!CL:0002057;2.90e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.64e-33!115;UBERON:0002390!1.95e-27!102;UBERON:0003061!1.95e-27!102;UBERON:0002193!7.41e-24!112;UBERON:0002371!3.50e-16!80;UBERON:0002405!1.09e-13!115;UBERON:0001474!1.23e-13!86;UBERON:0001049!1.05e-11!57;UBERON:0005068!1.05e-11!57;UBERON:0006241!1.05e-11!57;UBERON:0007135!1.05e-11!57;UBERON:0001017!2.93e-10!82;UBERON:0000178!4.50e-10!15;UBERON:0000179!4.50e-10!15;UBERON:0000463!4.50e-10!15;UBERON:0002616!4.56e-10!59;UBERON:0005743!7.81e-10!86;UBERON:0004765!2.29e-09!101;UBERON:0001434!2.29e-09!101;UBERON:0003080!6.16e-08!42;UBERON:0002780!7.13e-08!41;UBERON:0001890!7.13e-08!41;UBERON:0006240!7.13e-08!41;UBERON:0000073!1.21e-07!94;UBERON:0001016!1.21e-07!94;UBERON:0000955!1.72e-07!69;UBERON:0006238!1.72e-07!69;UBERON:0003075!4.80e-07!86;UBERON:0007284!4.80e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.34e-11;15!UBERON:0000179;3.34e-11;15!UBERON:0000463;3.34e-11;15!UBERON:0002390;8.91e-10;32!UBERON:0007023;9.05e-10;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.36e-36,114;UBERON:0002390,3.22e-32,98;UBERON:0003061,3.22e-32,98;UBERON:0002193,1.07e-28,108;UBERON:0002405,6.91e-20,93;UBERON:0002371,1.05e-19,76;UBERON:0001474,1.28e-16,82;UBERON:0004765,2.94e-13,90;UBERON:0001049,6.60e-12,56;UBERON:0005068,6.60e-12,56;UBERON:0006241,6.60e-12,56;UBERON:0007135,6.60e-12,56;UBERON:0000178,3.32e-11,15;UBERON:0000179,3.32e-11,15;UBERON:0000463,3.32e-11,15;UBERON:0001017,7.87e-11,81;UBERON:0000073,1.10e-10,53;UBERON:0002616,1.10e-10,53;UBERON:0001434,1.67e-10,100;UBERON:0001016,3.90e-08,89;UBERON:0000955,4.84e-08,68;UBERON:0006238,4.84e-08,68;UBERON:0002780,1.17e-07,41;UBERON:0001890,1.17e-07,41;UBERON:0003080,1.17e-07,41;UBERON:0006240,1.17e-07,41;UBERON:0003075,8.48e-07,82;UBERON:0007284,8.48e-07,82;UBERON:0003081,8.91e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.912679562677,1.02000345622126,31.6589268692869,8.01460763966959,2.05311637609326,1.25542639594803,20.0203123059632,16.9948220161388,21.6454648612618,9.4407426443737,9.59573495243032,17.4942219347166,0,0,0,116.278268071033,47.0580159533365,40.5168606282089,7.75593571944628,8.82395568868623,4.99125002646459,21.0480545785529,34.6566222640308,35.5454283335177,8.28769961043519,17.3822934096852,8.49044214157357,9.0647324393217,12.7462045286766,7.12324653058738,12.9461576544968,27.4091955986138,10.4052181150977,7.58440497620561,13.5551783552603,6.77132432971709,5.83551252582075,15.2827444032394,7.64059847113288,10.1007684482398,17.009238435033,6.39337125799041,9.23583640522805,26.1297391484338,11.9342930149154,8.12585868160035,13.0498601678962,7.4738669879469,8.54245461872927,28.6815605131111,9.99068685643537,6.65939452896706,12.1531619875896,6.96217252369946,20.4917627722584,46.3477373923795,25.7880133975302,5.16711703273877,14.7173354984676,4.66104201421532,3.42015292489498,7.35991705636633,4.01861138282195,174.236282016709,206.986533668348,201.918600627027,192.028600154928,263.860955456732,221.279689382476,225.416301619638,241.375599897447,207.762733724949,156.20509237267,202.604810906371,42.2948251452883,16.8152568894461,26.0750243927326,0.590129310341499,1.17903228824749,2.05601498999509,0.501559486172034,5.54067853277104,2.36723902867367,3.89653456815823,4.56782873229212,7.36514768687093,10.6336269400138,17.060643417196,5.63601806792971,7.93362020115257,0.164437904603676,0.276350017785848,0,5.04174314751005,5.61835738988397,1.04535523804977,0.566546713487831,0.766440987203842,2.74901956386104,2.02415753615602,10.1940932583711,11.0684187155591,17.1081368000707,13.8529109551551,14.8464468939125,8.74515085866421,8.99753557767264,13.1380479507367,9.07230344511296,6.95344509037119,10.5721814834443,0,0,0,0,0,0,0,0,1.41802225746102,0.665188192387692,1.58102614247627,25.540919722054,0,0,10.0609692032952,14.1045087212406,13.2957960518865,139.27852459432,85.7992366170192,101.036440361642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267899184852239,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,1.41867352879343,0,0,0,0.311211035399766,0,0,6.65972681637698,2.30470369792,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,14.5148710294219,13.915625673756,16.4995398874716,6.84162963101445,14.8869302016621,19.7087773900948,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,1.6462960453256,2.94017422771084,2.53510069643662,2.94848165003288,11.2250082269467,0,0,0,0,0,0,0.277765335475589,0,0,0,2.55046890945169,0.352226082707465,0,0,0,0,0,33.2392958217986,5.85010662848094,54.1017430730971,0,0,0,0,0.290633938513962,0,0,0,1.03664057770386,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,1.68196626518041,4.79556075716608,0.2933531432838,0,0,0,0,0,0.771622122786426,0,0,0,0,0,0,0,0,0,0,0,23.1085183218262,23.1038262058778,23.1917333431335,0,0,0,0,0,0,16.9248567430226,5.31983052545203,2.37190332345469,4.10697716095195,2.28685161800217,0,0.773288812777695,1.00509759200609,3.18969375826582,0,0,0,0,0,0.542530047399471,0,0,0,0,0,0,0,0,0,0,2.34961388955289,3.0882908142977,22.5377148473947,16.3942792622149,32.7653602456574,0,0,0.30239029332968,0,0,0,0,0,0,0,0,4.43904313282818,4.35273926873188,0,5.34567740915813,0,0.200506470303285,0.0920809889358963,0,0,0,0.451199612907412,0.693138033939733,0.784349769176855,1.46139224653261,1.58327443339314,0,0,0.215915916102139,0,0,0.501689773854853,0,0.831076008928724,0.223874754722178,0,0,0.256450125116389,0,0,7.31591182698828,0,0.082509499920588,0.574265537996172,0,0,0.580024309752732,0.924291702687866,1.07452572308291,0,1.28904293841928,0.725083469571143,0.93749290157711,0.178064071293475,0.165284915360978,0.576570202095319,0,0.2023155617111,0,0,0,0,0,0,0,0,1.48863347743867,0,0,0,0,0,0,0.179872457583315,0,0.235624804691373,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0.655894752046633,0,1.239293992399,0,0,0,0,0,0.422215270595328,0,0,0,0.192444225451024,0,0,6.87249745670488,0,0,0,0.229723400206959,22.8351424154476,16.8220185571323,20.5072987382699,37.8788522977884,40.313502762447,23.9935125141305,11.3406601820004,23.0006301125338,0.747768497892312,0,0,15.9790730608118,16.1581518533618,0,2.23196781820351,0,2.8725805519855,0,0,1.12318871245384,0.456469358066384,0,0,0,0,1.21079824314629,25.1249280237293,0,0,0,0,0,0,0,0,0,0,0,12.453195238111,0,112.000601198866,0.284136146806413,0,0.890894042497916,0,8.94732882989668,6.6114625712941,0,2.63686198762815,0.844501632511974,17.7330709543452,53.3227956975115,0,0,50.4647702390385,0,0.0898683511473268,0,0,10.1602707806042,28.7379710816328,0,4.84666373047609,7.14314355846255,1.99613798001194,0,0,1.44999915086959,0,0,0,0,0.583209226766509,3.47249989866585,3.54296554325536,7.71817207202611,0,1.87984741883082,5.02430952221031,3.29078095730959,0,0,11.773389551081,0.113942055847001,0,0,0,1.5950057986596,0.0915975934018623,11.1937302963913,0,0,0,0,0,0,0,0,0,0,0,0,6.96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| |||
|short_description=p1@HLA-DOA | |||
}} |
Latest revision as of 05:06, 18 September 2015
Short description: | p1@HLA-DOA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DOA_5end |
Coexpression cluster: | C1215_migratory_CD19_adult_immature_Dendritic_Burkitt_vein |
Association with transcript: | 0bp_to_ENST00000229829, ENST00000374813, ENST00000450833, ENST00000467465, NM_002119, uc003ocr.2, uc010jui.2, uc010juj.2_5end |
EntrezGene: | HLA-DOA |
HGNC: | 4936 |
UniProt: | P06340F6R133B4DW77 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.36e-36 | 114 |
hematopoietic system | 3.22e-32 | 98 |
blood island | 3.22e-32 | 98 |
hemolymphoid system | 1.07e-28 | 108 |
immune system | 6.91e-20 | 93 |
bone marrow | 1.05e-19 | 76 |
bone element | 1.28e-16 | 82 |
skeletal element | 2.94e-13 | 90 |
neural tube | 6.60e-12 | 56 |
neural rod | 6.60e-12 | 56 |
future spinal cord | 6.60e-12 | 56 |
neural keel | 6.60e-12 | 56 |
blood | 3.32e-11 | 15 |
haemolymphatic fluid | 3.32e-11 | 15 |
organism substance | 3.32e-11 | 15 |
central nervous system | 7.87e-11 | 81 |
regional part of nervous system | 1.10e-10 | 53 |
regional part of brain | 1.10e-10 | 53 |
skeletal system | 1.67e-10 | 100 |
nervous system | 3.90e-08 | 89 |
brain | 4.84e-08 | 68 |
future brain | 4.84e-08 | 68 |
regional part of forebrain | 1.17e-07 | 41 |
forebrain | 1.17e-07 | 41 |
anterior neural tube | 1.17e-07 | 41 |
future forebrain | 1.17e-07 | 41 |
neural plate | 8.48e-07 | 82 |
presumptive neural plate | 8.48e-07 | 82 |
lateral plate mesoderm | 8.91e-07 | 203 |