FFCP PHASE1:Hg19::chr6:129204301..129204323,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3908 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6482 | |||
|TSSclassifier=strong | |||
|UniProt=F8WAH5,A6NGS5,P24043,Q59H37 | |||
|association_with_transcript=15bp_to_ENST00000354729,ENST00000358023,NM_000426,NM_001079823,uc003qbn.2,uc003qbo.2_5end | |||
|cluster_id=chr6:129204301..129204323,+ | |||
|coexpression_cluster_id=C4556 | |||
|description=CAGE_peak_2_at_LAMA2_5end | |||
|id=chr6:129204301..129204323,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.34e-17!180;CL:0000057!6.82e-13!75;CL:0000680!2.11e-10!57;CL:0000056!2.11e-10!57;CL:0000355!2.11e-10!57;CL:0000187!4.39e-09!54;CL:0000136!4.51e-09!15;CL:0000183!1.93e-08!59;CL:0000393!6.80e-08!60;CL:0000211!6.80e-08!60;CL:0002620!5.37e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000136;6.03e-09;13!CL:0002620;2.50e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.90e-13,76;CL:0000680,3.32e-10,58;CL:0000056,3.32e-10,58;CL:0000355,3.32e-10,58;CL:0000136,1.37e-09,15;CL:0000187,7.59e-09,55;CL:0000393,8.33e-08,61;CL:0000211,8.33e-08,61;CL:0002620,2.25e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.83e-28!115;UBERON:0000475!8.25e-21!365;UBERON:0000481!3.58e-14!347;UBERON:0004290!1.31e-13!70;UBERON:0000468!1.47e-13!659;UBERON:0002385!2.61e-13!63;UBERON:0001015!2.61e-13!63;UBERON:0000383!2.61e-13!63;UBERON:0000914!6.23e-13!83;UBERON:0002329!6.23e-13!83;UBERON:0003077!6.23e-13!83;UBERON:0003059!6.23e-13!83;UBERON:0007282!6.23e-13!83;UBERON:0009618!6.23e-13!83;UBERON:0007285!6.23e-13!83;UBERON:0001134!1.41e-12!61;UBERON:0002036!1.41e-12!61;UBERON:0003082!1.41e-12!61;UBERON:0007100!2.07e-12!27;UBERON:0002616!2.70e-12!59;UBERON:0000119!6.24e-12!312;UBERON:0001049!1.21e-11!57;UBERON:0005068!1.21e-11!57;UBERON:0006241!1.21e-11!57;UBERON:0007135!1.21e-11!57;UBERON:0000477!2.61e-11!286;UBERON:0000483!3.22e-11!309;UBERON:0003075!9.11e-11!86;UBERON:0007284!9.11e-11!86;UBERON:0005743!1.03e-10!86;UBERON:0001017!1.70e-10!82;UBERON:0000486!2.31e-10!82;UBERON:0000955!2.64e-10!69;UBERON:0006238!2.64e-10!69;UBERON:0000948!2.70e-10!24;UBERON:0005498!2.70e-10!24;UBERON:0004140!2.70e-10!24;UBERON:0009881!2.70e-10!24;UBERON:0004141!2.70e-10!24;UBERON:0003084!2.70e-10!24;UBERON:0007005!2.70e-10!24;UBERON:0004139!2.70e-10!24;UBERON:0004291!2.70e-10!24;UBERON:0004111!6.75e-10!241;UBERON:0000467!1.35e-09!625;UBERON:0000480!1.97e-09!626;UBERON:0002346!2.66e-09!90;UBERON:0000479!6.97e-09!787;UBERON:0000073!7.11e-09!94;UBERON:0001016!7.11e-09!94;UBERON:0000153!7.29e-09!129;UBERON:0007811!7.29e-09!129;UBERON:0000033!1.73e-08!123;UBERON:0000025!3.05e-08!194;UBERON:0003080!3.89e-08!42;UBERON:0002780!1.31e-07!41;UBERON:0001890!1.31e-07!41;UBERON:0006240!1.31e-07!41;UBERON:0000062!1.66e-07!511;UBERON:0005256!3.34e-07!143;UBERON:0002100!4.45e-07!216;UBERON:0004872!6.40e-07!84;UBERON:0004121!7.12e-07!169;UBERON:0003102!7.82e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;6.87e-13;25!UBERON:0000948;1.32e-10;22!UBERON:0002385;4.90e-09;31!UBERON:0001015;4.90e-09;31!UBERON:0000383;4.90e-09;31!UBERON:0001134;1.18e-08;16!UBERON:0002036;1.18e-08;16!UBERON:0007023;1.33e-08;114!UBERON:0001013;6.15e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.63e-30,114;UBERON:0010314,1.85e-16,132;UBERON:0007524,3.94e-14,73;UBERON:0003077,7.79e-14,72;UBERON:0007285,7.79e-14,72;UBERON:0002329,1.42e-13,71;UBERON:0003059,1.42e-13,71;UBERON:0007282,1.42e-13,71;UBERON:0004290,1.42e-13,71;UBERON:0009618,1.42e-13,71;UBERON:0007100,3.06e-13,27;UBERON:0002385,3.25e-13,64;UBERON:0001015,3.25e-13,64;UBERON:0000383,3.25e-13,64;UBERON:0001134,1.89e-12,62;UBERON:0002036,1.89e-12,62;UBERON:0003082,1.89e-12,62;UBERON:0000479,8.34e-12,773;UBERON:0001049,2.05e-11,56;UBERON:0005068,2.05e-11,56;UBERON:0006241,2.05e-11,56;UBERON:0007135,2.05e-11,56;UBERON:0000119,3.75e-11,309;UBERON:0000948,5.64e-11,24;UBERON:0005498,5.64e-11,24;UBERON:0004140,5.64e-11,24;UBERON:0009881,5.64e-11,24;UBERON:0004141,5.64e-11,24;UBERON:0003084,5.64e-11,24;UBERON:0007005,5.64e-11,24;UBERON:0004139,5.64e-11,24;UBERON:0004291,5.64e-11,24;UBERON:0007503,1.45e-10,78;UBERON:0000483,1.93e-10,306;UBERON:0001017,2.09e-10,81;UBERON:0000486,2.23e-10,83;UBERON:0000955,2.54e-10,68;UBERON:0006238,2.54e-10,68;UBERON:0000073,3.43e-10,53;UBERON:0002616,3.43e-10,53;UBERON:0003075,3.89e-10,82;UBERON:0007284,3.89e-10,82;UBERON:0002346,8.26e-09,86;UBERON:0001016,9.28e-09,89;UBERON:0004111,1.89e-08,240;UBERON:0005256,2.52e-08,122;UBERON:0002780,9.99e-08,41;UBERON:0001890,9.99e-08,41;UBERON:0003080,9.99e-08,41;UBERON:0006240,9.99e-08,41;UBERON:0010371,2.68e-07,104;UBERON:0003104,4.64e-07,160;UBERON:0009142,4.64e-07,160;UBERON:0001013,6.63e-07,14;UBERON:0000025,6.83e-07,192;UBERON:0000923,7.25e-07,560;UBERON:0010316,7.25e-07,560;UBERON:0005291,7.25e-07,560;UBERON:0006598,7.25e-07,560;UBERON:0010317,7.25e-07,560;UBERON:0002532,7.25e-07,560;UBERON:0002050,8.55e-07,564 | |||
|phase1_expression=124.813046558872,65.9429613584228,112.340660064489,84.0615706166296,98.7784018684306,28.7871712953122,30.3959853801973,50.5375898741465,27.424490960983,0.982935746006035,0,0,0,0.866364470720326,0.994192127183747,0,0,0,0,3.0780264519197,3.67201244239655,3.44800193625897,2.28988789704845,0.410623275218653,2.25976751270645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.345786571101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,221.864248345705,11.4019146149618,11.5076305659177,8.31310050484502,2.50668955317945,7.67686550492366,5.5670016293577,3.40644409211845,1.89069634328136,1.10864698731282,0.43917392846563,14.604166917995,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,1.13061588384802,0,0.550236083880135,2.29894463190492,0.258416759169329,0,1.33888245105868,0.805658634218294,0,0.488124115096339,0,6.48113558305408,0,0,0,0,0,0,0,0,0,24.3516256330706,10.6369629798247,16.0215108783995,62.2435467024926,5.32002573297536,11.2135520028461,0,3.45334567784024,70.0224829649474,39.0660949002095,38.4135472316628,88.6954525999298,78.3599257292799,3.04617861383936,3.43376084513353,1.71141546463335,4.33401173600223,5.04968344168189,1.94247533241758,1.82586048712923,2.85815839756851,0.859840221182376,8.57603983758853,21.384051431077,13.5996811103206,4.55080680969013,2.15585442544872,1.0100166837244,1.12606667884768,3.87889761677856,3.95079858792754,3.0648779579902,10.3664260645552,4.08355859376076,21.3473666469746,15.5896893837554,16.5306882904458,35.1106582418751,11.2327256869898,46.8905782883045,14.8893485065272,24.8101208394661,8.67189345934668,17.670364197088,14.1756843909141,14.3864990568743,59.2866019502746,11.8887475908616,5.25637836162512,0,0,0,0.975789649036763,0.662648841607426,1.16193942869518,1.45125477021519,0.252320850875628,1.09493207722749,14.0804579096834,13.5080597020506,6.90674606762403,45.043689019102,24.5439023767659,0,0,0,0.330881918197182,0,0,0.134831308160164,0,0,0,0,0.4115740113314,1.47008711385542,0,0,5.31710916013264,0,0,0.514703430895577,0,0,0,0.0925884451585296,2.93227474779292,0,0,0.463721619900307,7.74897381956423,1.01056513432752,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28060927094849,0.432359860250884,1.38866676769018,0.190493682876507,0,0,6.84289784090821,0.102827492703324,0,0,10.5403219284639,33.1329652313293,10.7807280156797,3.61960804121778,39.3422090437071,4.22651376278,9.0418959638856,7.28052058379563,0,0,0,48.8984738310865,21.7048642156577,2.46972101034231,3.25736184293735,41.9362499516204,10.2953743481346,1.20575750823834,0,0.499864955910285,0,0,0,0.479249710983165,1.14861935834114,22.8219048065149,36.6296705868975,21.7804901903406,47.4511552585723,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,1.71768088406796,1.00034104211935,1.89885516589815,1.24782516918484,4.46072471992904,20.6590163694454,8.43418187947535,9.63027519128701,9.09630016223939,20.694614258501,2.65690239414175,0.921845842708516,6.77692192851046,15.4682914395565,21.2748922762731,0,0,0,0,0,0,38.4567102119104,40.9743468679127,18.5235662325829,34.5975702990393,28.6556059477354,13.1900215337758,10.3892646511494,5.85996836450091,11.3639504200401,7.96633413333949,25.4434670299974,9.52925103371666,0,0,0,25.7184363888719,21.1225754887792,41.9598127870157,0,0,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0,0,0,0,0,1.79515087581472,0.656029291399411,1.30151357865721,31.6335905758507,0,0,0,0,22.4957501781823,14.4039370255262,4.62145851343933,5.98664331431905,8.68370406652543,23.2027728915471,18.8521702088497,6.73290356587197,17.3612469511138,0.165284915360978,0.384380134730212,0,0,1.39453664789186,105.147323841434,20.911118104818,7.39280592422613,4.25844824253617,18.2685928335765,2.59453906745488,4.29374660225974,28.2840360713347,3.48017367190598,8.95961911441977,0.767693373934002,27.3880952341709,7.95508119814842,8.63443504219153,16.008648724915,20.3157402004681,9.89624179703766,4.04364963146632,9.5106192703805,6.7401352998237,1.95053495635836,4.87426979262569,7.39551027297288,46.2734699673072,66.1777421543376,18.0812986592388,11.0273068709225,9.28814565337708,6.57676327880644,2.31510213706675,13.7737897929793,0,0.92947049429925,0.281695602532241,3.58528380510129,3.43871643545924,0.35667105148125,12.0618761784003,4.64436797654861,7.57378253807774,0.75894634753143,1.04980416073495,0,0.670302275535787,0,37.1868013068278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,78.0888595519195,0,0,0,0.47748896947538,0,0,5.96488588659779,5.62677665642051,0,0,0,39.4511016737118,12.1564922833705,0,1.63629892003448,0,13.3747022694577,0,0,0,45.0800363760787,0,11.1136990144637,7.75466196876175,4.26733251544516,1.99613798001194,0,0,108.024936739784,0,0,0,0,0,1.21537496453305,8.85741385813839,7.71817207202611,6.10326945268333,19.7936875276892,7.97978571174578,15.3569778007781,0,0,52.6339768165972,0.113942055847001,0,0,0,0.638002319463839,7.96899062596202,3.7312434321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| |||
|short_description=p2@LAMA2 | |||
}} |
Latest revision as of 16:04, 24 September 2015
Short description: | p2@LAMA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAMA2_5end |
Coexpression cluster: | C4556_Cardiac_heart_Adipocyte_Smooth_left_Fibroblast_skeletal |
Association with transcript: | 15bp_to_ENST00000354729, ENST00000358023, NM_000426, NM_001079823, uc003qbn.2, uc003qbo.2_5end |
EntrezGene: | LAMA2 |
HGNC: | 6482 |
UniProt: | F8WAH5A6NGS5P24043Q59H37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.90e-13 | 76 |
muscle precursor cell | 3.32e-10 | 58 |
myoblast | 3.32e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.32e-10 | 58 |
fat cell | 1.37e-09 | 15 |
muscle cell | 7.59e-09 | 55 |
electrically responsive cell | 8.33e-08 | 61 |
electrically active cell | 8.33e-08 | 61 |
skin fibroblast | 2.25e-07 | 23 |