FFCP PHASE1:Hg19::chrX:29686367..29686386,+: Difference between revisions
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|id=chrX:29686367..29686386,+
|short_description=p@chrX:29686367..29686386,+
|description=CAGE_peak_at_chrX:29686367..29686386,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chrX:29686367..29686386,+ | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_at_chrX:29686367..29686386,+ | |||
|id=chrX:29686367..29686386,+ | |||
|ontology_enrichment_celltype=CL:0000148!7.80e-24!10;CL:0000541!7.80e-24!10;CL:0002567!4.35e-21!3;CL:0000147!7.03e-17!14;CL:0000710!1.19e-11!20;CL:0000075!1.76e-08!27;CL:0002566!3.32e-08!1;CL:0002077!7.85e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002567;1.81e-54;3!CL:0000148;6.16e-45;10!CL:0000147;3.41e-32;14!CL:0000710;1.30e-22;20!CL:0002566;1.56e-19;1!CL:0000075;8.44e-17;27!CL:0002077;3.61e-12;34!CL:0000322;1.82e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,1.25e-54,3;CL:0000148,5.62e-45,10;CL:0000541,5.62e-45,10;CL:0000147,3.20e-32,14;CL:0000710,1.24e-22,20;CL:0002566,1.56e-19,1;CL:0000075,8.17e-17,27;CL:0002077,2.22e-13,34;CL:0000333,1.34e-10,41;CL:0000133,1.76e-07,59;CL:0000322,1.82e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.91e-19;1!UBERON:0003056;2.97e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3910;1.43e-10;2!DOID:1909;1.89e-10;2!DOID:0060084;2.97e-07;3!DOID:127;2.97e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,1.43e-10,2;DOID:1909,1.72e-10,2;DOID:0060084,3.35e-07,3;DOID:127,3.35e-07,3 | |||
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|short_description=p@chrX:29686367..29686386,+ | |||
}} | }} |
Latest revision as of 07:43, 1 August 2015
Short description: | p@chrX:29686367..29686386, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chrX:29686367..29686386, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 1.25e-54 | 3 |
melanocyte | 5.62e-45 | 10 |
melanoblast | 5.62e-45 | 10 |
pigment cell | 3.20e-32 | 14 |
neurecto-epithelial cell | 1.24e-22 | 20 |
dark melanocyte | 1.56e-19 | 1 |
columnar/cuboidal epithelial cell | 8.17e-17 | 27 |
ecto-epithelial cell | 2.22e-13 | 34 |
migratory neural crest cell | 1.34e-10 | 41 |
neurectodermal cell | 1.76e-07 | 59 |
pneumocyte | 1.82e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.25e-19 | 1 |
cranial nerve | 3.25e-19 | 1 |
nerve trunk | 3.25e-19 | 1 |
nerve connecting eye with brain | 3.25e-19 | 1 |
nerve | 3.25e-19 | 1 |
retinal neural layer | 3.25e-19 | 1 |
presumptive neural retina | 3.25e-19 | 1 |
bronchoalveolar duct junction | 1.43e-10 | 2 |
alveolar duct | 1.43e-10 | 2 |
bronchiole | 1.43e-10 | 2 |
neural tissue | 2.72e-10 | 2 |
multi cell component structure | 2.72e-10 | 2 |
neuron projection bundle | 2.72e-10 | 2 |
pulmonary alveolus epithelium | 1.82e-07 | 3 |
alveolus | 1.82e-07 | 3 |
pulmonary lobule | 1.82e-07 | 3 |
lobule | 1.82e-07 | 3 |
alveolus of lung | 1.82e-07 | 3 |
alveolar system | 1.82e-07 | 3 |
pulmonary acinus | 1.82e-07 | 3 |
alveolar sac | 1.82e-07 | 3 |
alveolar wall | 1.82e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.43e-10 | 2 |
melanoma | 1.72e-10 | 2 |
cell type benign neoplasm | 3.35e-07 | 3 |
leiomyoma | 3.35e-07 | 3 |