FFCP PHASE1:Hg19::chrX:23801280..23801297,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:23801280..23801297,+
|short_description=p1@SAT1
|description=CAGE_peak_1_at_SAT1_5end
|association_with_transcript=0bp_to_ENST00000342463,ENST00000379251,E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6303 | |EntrezGene=6303 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10540 | |HGNC=10540 | ||
|TSSclassifier=strong | |||
|UniProt=A6NJE6,A6NM56,E9PD37,P21673 | |UniProt=A6NJE6,A6NM56,E9PD37,P21673 | ||
|association_with_transcript=0bp_to_ENST00000342463,ENST00000379251,ENST00000379253,ENST00000379254,ENST00000379270_5end | |||
|cluster_id=chrX:23801280..23801297,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_SAT1_5end | |||
|id=chrX:23801280..23801297,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.57e-27!42;CL:0000766!4.33e-26!76;CL:0000860!2.18e-22!45;CL:0000557!3.54e-21!71;CL:0000839!1.08e-20!70;CL:0002009!3.25e-20!65;CL:0002194!1.64e-19!63;CL:0000576!1.64e-19!63;CL:0000040!1.64e-19!63;CL:0000559!1.64e-19!63;CL:0000738!9.94e-13!140;CL:0000763!5.31e-11!112;CL:0000049!5.31e-11!112;CL:0002076!1.94e-09!43;CL:0000223!1.66e-08!59;CL:0002031!2.12e-08!124;CL:0002087!2.40e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.04e-20;33!CL:0002057;9.04e-20;33!CL:0000473;2.02e-18;39!CL:0000234;2.02e-18;39!CL:0000576;6.80e-16;48!CL:0000766;3.59e-14;69!CL:0002076;2.30e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.31e-30,72;CL:0000473,3.28e-29,48;CL:0000234,3.28e-29,48;CL:0000860,5.57e-27,42;CL:0002057,5.57e-27,42;CL:0000557,9.86e-25,67;CL:0000839,3.17e-24,66;CL:0002009,7.03e-24,61;CL:0002194,3.61e-23,59;CL:0000576,3.61e-23,59;CL:0000040,3.61e-23,59;CL:0000559,3.61e-23,59;CL:0000738,2.26e-14,136;CL:0000763,1.05e-12,108;CL:0000049,1.05e-12,108;CL:0002031,9.55e-10,120;CL:0002076,2.17e-09,42;CL:0002087,1.31e-08,115;CL:0000223,1.96e-08,58 | |||
|ontology_enrichment_development_v019=CL:0002057;1.71e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.06e-18!102;UBERON:0003061!2.06e-18!102;UBERON:0002193!2.00e-17!112;UBERON:0002371!7.36e-17!80;UBERON:0002405!1.57e-15!115;UBERON:0001474!3.75e-14!86;UBERON:0003081!1.48e-12!216;UBERON:0004765!3.53e-11!101;UBERON:0001434!3.53e-11!101;UBERON:0000926!1.09e-09!448;UBERON:0004120!1.09e-09!448;UBERON:0006603!1.09e-09!448;UBERON:0000922!1.86e-08!612;UBERON:0000923!3.85e-08!604;UBERON:0005291!3.85e-08!604;UBERON:0006598!3.85e-08!604;UBERON:0002532!3.85e-08!604;UBERON:0002050!4.49e-08!605;UBERON:0005423!4.49e-08!605;UBERON:0000467!2.48e-07!625;UBERON:0000480!3.05e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.03e-21,98;UBERON:0003061,6.03e-21,98;UBERON:0002193,9.96e-20,108;UBERON:0002371,1.15e-19,76;UBERON:0002405,7.97e-18,93;UBERON:0004765,3.34e-17,90;UBERON:0001474,1.57e-16,82;UBERON:0003081,2.31e-13,203;UBERON:0001434,1.38e-12,100;UBERON:0000922,2.17e-10,592;UBERON:0005423,3.14e-10,581;UBERON:0002050,2.96e-09,564;UBERON:0000923,1.75e-08,560;UBERON:0010316,1.75e-08,560;UBERON:0005291,1.75e-08,560;UBERON:0006598,1.75e-08,560;UBERON:0010317,1.75e-08,560;UBERON:0002532,1.75e-08,560;UBERON:0000926,4.08e-08,315;UBERON:0004120,4.08e-08,315;UBERON:0006603,4.08e-08,315 | |||
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| ||
|short_description=p1@SAT1 | |||
}} | }} |
Latest revision as of 17:55, 24 September 2015
Short description: | p1@SAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAT1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000342463, ENST00000379251, ENST00000379253, ENST00000379254, ENST00000379270_5end |
EntrezGene: | SAT1 |
HGNC: | 10540 |
UniProt: | A6NJE6A6NM56E9PD37P21673 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.31e-30 | 72 |
defensive cell | 3.28e-29 | 48 |
phagocyte | 3.28e-29 | 48 |
classical monocyte | 5.57e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.57e-27 | 42 |
granulocyte monocyte progenitor cell | 9.86e-25 | 67 |
myeloid lineage restricted progenitor cell | 3.17e-24 | 66 |
macrophage dendritic cell progenitor | 7.03e-24 | 61 |
monopoietic cell | 3.61e-23 | 59 |
monocyte | 3.61e-23 | 59 |
monoblast | 3.61e-23 | 59 |
promonocyte | 3.61e-23 | 59 |
leukocyte | 2.26e-14 | 136 |
myeloid cell | 1.05e-12 | 108 |
common myeloid progenitor | 1.05e-12 | 108 |
hematopoietic lineage restricted progenitor cell | 9.55e-10 | 120 |
endo-epithelial cell | 2.17e-09 | 42 |
nongranular leukocyte | 1.31e-08 | 115 |
endodermal cell | 1.96e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.03e-21 | 98 |
blood island | 6.03e-21 | 98 |
hemolymphoid system | 9.96e-20 | 108 |
bone marrow | 1.15e-19 | 76 |
immune system | 7.97e-18 | 93 |
skeletal element | 3.34e-17 | 90 |
bone element | 1.57e-16 | 82 |
lateral plate mesoderm | 2.31e-13 | 203 |
skeletal system | 1.38e-12 | 100 |
embryo | 2.17e-10 | 592 |
developing anatomical structure | 3.14e-10 | 581 |
embryonic structure | 2.96e-09 | 564 |
germ layer | 1.75e-08 | 560 |
germ layer / neural crest | 1.75e-08 | 560 |
embryonic tissue | 1.75e-08 | 560 |
presumptive structure | 1.75e-08 | 560 |
germ layer / neural crest derived structure | 1.75e-08 | 560 |
epiblast (generic) | 1.75e-08 | 560 |
mesoderm | 4.08e-08 | 315 |
mesoderm-derived structure | 4.08e-08 | 315 |
presumptive mesoderm | 4.08e-08 | 315 |