FFCP PHASE1:Mm9::chr17:30025515..30025538,-: Difference between revisions
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{{FFCP|EntrezGene=74762|HGNC=|MCL_coexpression_id=22|UniProt=E9PY95|association_with_transcript=35bp_to_ENSMUST00000171691_5end|description=CAGE_peak_1_at_Mdga1_5end|id=chr17:30025515..30025538,-|ontology_enrichment_celltype=CL:0000117!1.68e-13!23;CL:0000337!1.68e-13!23;CL:0000221!7.32e-10!44;CL:0000133!7.32e-10!44;CL:0002319!2.38e-09!43;CL:0000540!2.30e-08!33;CL:0000047!2.30e-08!33;CL:0000031!2.30e-08!33;CL:0000404!2.30e-08!33;CL:0000055!9.04e-08!50;CL:0000393!3.06e-07!39;CL:0000211!3.06e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.91e-15,23;CL:0000337,4.91e-15,23;CL:0000221,1.12e-09,44;CL:0000133,1.12e-09,44;CL:0002319,3.98e-09,43;CL:0000540,1.46e-08,33;CL:0000047,1.46e-08,33;CL:0000031,1.46e-08,33;CL:0000404,1.46e-08,33;CL:0000393,8.05e-07,39;CL:0000211,8.05e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.97e-17!73;UBERON:0005743!1.97e-17!73;UBERON:0000073!1.48e-16!75;UBERON:0001016!1.48e-16!75;UBERON:0001049!2.11e-16!52;UBERON:0005068!2.11e-16!52;UBERON:0006241!2.11e-16!52;UBERON:0007135!2.11e-16!52;UBERON:0000033!8.36e-16!63;UBERON:0002020!1.88e-15!34;UBERON:0000955!6.83e-15!50;UBERON:0006238!6.83e-15!50;UBERON:0002616!3.03e-14!49;UBERON:0004121!9.59e-14!102;UBERON:0000924!9.59e-14!102;UBERON:0006601!9.59e-14!102;UBERON:0002346!1.78e-13!71;UBERON:0003075!1.78e-13!71;UBERON:0007284!1.78e-13!71;UBERON:0003056!1.81e-13!49;UBERON:0003080!1.17e-12!40;UBERON:0002780!1.30e-12!39;UBERON:0001890!1.30e-12!39;UBERON:0006240!1.30e-12!39;UBERON:0000153!1.92e-12!94;UBERON:0002791!2.21e-12!29;UBERON:0003528!2.21e-12!29;UBERON:0001893!2.21e-12!29;UBERON:0007811!1.61e-11!86;UBERON:0000956!2.35e-08!21;UBERON:0001869!2.35e-08!21;UBERON:0000203!2.35e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.21e-18,54;UBERON:0001017,2.52e-17,73;UBERON:0001049,1.01e-16,52;UBERON:0005068,1.01e-16,52;UBERON:0006241,1.01e-16,52;UBERON:0007135,1.01e-16,52;UBERON:0002020,1.06e-16,34;UBERON:0001016,3.62e-16,75;UBERON:0002346,1.88e-15,64;UBERON:0003075,1.88e-15,64;UBERON:0007284,1.88e-15,64;UBERON:0004121,4.69e-15,95;UBERON:0000924,4.69e-15,95;UBERON:0006601,4.69e-15,95;UBERON:0010371,4.71e-15,73;UBERON:0000955,7.21e-15,47;UBERON:0006238,7.21e-15,47;UBERON:0002616,3.69e-14,46;UBERON:0003056,1.67e-13,49;UBERON:0003528,2.92e-13,29;UBERON:0002791,2.92e-13,29;UBERON:0001893,2.92e-13,29;UBERON:0003080,5.77e-13,40;UBERON:0002780,6.66e-13,39;UBERON:0001890,6.66e-13,39;UBERON:0006240,6.66e-13,39;UBERON:0010314,6.61e-11,92;UBERON:0000956,9.28e-09,21;UBERON:0001869,9.28e-09,21;UBERON:0000203,9.28e-09,21|phase1_expression=8.48788889655408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,1.31790010585369,0.550640256485045,10.1710874765245,2.39827672018491,1.5378032791413,0.777719596297134,3.49966054063406,2.87505128729943,0,0,0,0.257259436035947,1.14613375975503,0.515672092277442,27.7173551377649,25.3915670050576,20.2826049121977,1.35537812827653,4.4464739805557,0,0.988866362566974,0.7104801149461,6.2916023208865,7.68436610643109,25.0928861786516,26.191152036348,18.718921560273,13.139945282575,8.39300455616131,8.45186514583183,9.58454710182364,7.35375029288017,1.10115880999389,3.31987079021488,4.45458946443106,21.2336923245612,24.7016637726506,22.9201883044974,3.62937898701795,5.06486349028512,6.57032465440283,15.0260578591571,12.9558229527184,12.6751623161204,0.37863096666592,0.151143120213571,0,0,0,0,0,0,0.983110940922263,2.55645483867087,0.259786004602869,2.12003744706204,10.7040999030277,10.2661181931454,33.1246811618639,14.2213340630666,0,0,0,0.11418387971906,0,0.148442139064825,1.21439728736295,1.21786191324856,0.230615497256059,0.452167921657868,1.17588707135705,0,0,0.289198713839823,0.884610551949874,2.75003644910596,1.98757366614354,1.93950101254089,0,2.34224637609238,2.93225389538837,0,8.98613433794402,4.79922184794726,6.22644112658017,2.09706895166752,3.66000482254901,7.79056983099759,3.12883776346098,5.8814555185976,2.49345653471472,3.40706652442291,1.01839363850316,0.373220911830279,0.252722758433675,0.841767423545896,1.43132487258974,2.06911893990126,2.16074555766419,1.65775299619287,1.7009124787832,2.8185018462667,5.05989312622536,3.88055056108524,2.58681591519411,2.08016688184601,4.39877810409872,1.97276159184817,1.94633074457919,4.52727816478817,2.67516777330327,1.59227413454795,0,3.08817488537658,1.98914449576915,1.44988040774851,1.17263029990548,2.34080679899319,3.31442629819294,1.57411385397923,1.07986979021165,2.79040733700489,1.60964040839772,0.233530684734339,1.31647879930784,0.32833492815819,0.56748166682099,0.146199987425332,0.439100230582101,0.402619256281115,10.0939175310781,18.6257348406505,0,0,0.426576501070468,0.696710015581316,0.644337306610467,1.61346819698674,1.33426826306922,0.380451252225118,0,0.494096864172033,0.754005626400808,0,0.58489226135736,0,0,0,0.379335801906163,0.342745537829186,2.25415471346161,0.610953983535943,0.387904974335251,0.561086559122548,0.06323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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74762 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=E9PY95 | |||
|association_with_transcript=35bp_to_ENSMUST00000171691_5end | |||
|cluster_id=chr17:30025515..30025538,- | |||
|description=CAGE_peak_1_at_Mdga1_5end | |||
|id=chr17:30025515..30025538,- | |||
|ontology_enrichment_celltype=CL:0000117!1.68e-13!23;CL:0000337!1.68e-13!23;CL:0000221!7.32e-10!44;CL:0000133!7.32e-10!44;CL:0002319!2.38e-09!43;CL:0000540!2.30e-08!33;CL:0000047!2.30e-08!33;CL:0000031!2.30e-08!33;CL:0000404!2.30e-08!33;CL:0000055!9.04e-08!50;CL:0000393!3.06e-07!39;CL:0000211!3.06e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.91e-15,23;CL:0000337,4.91e-15,23;CL:0000221,1.12e-09,44;CL:0000133,1.12e-09,44;CL:0002319,3.98e-09,43;CL:0000540,1.46e-08,33;CL:0000047,1.46e-08,33;CL:0000031,1.46e-08,33;CL:0000404,1.46e-08,33;CL:0000393,8.05e-07,39;CL:0000211,8.05e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.97e-17!73;UBERON:0005743!1.97e-17!73;UBERON:0000073!1.48e-16!75;UBERON:0001016!1.48e-16!75;UBERON:0001049!2.11e-16!52;UBERON:0005068!2.11e-16!52;UBERON:0006241!2.11e-16!52;UBERON:0007135!2.11e-16!52;UBERON:0000033!8.36e-16!63;UBERON:0002020!1.88e-15!34;UBERON:0000955!6.83e-15!50;UBERON:0006238!6.83e-15!50;UBERON:0002616!3.03e-14!49;UBERON:0004121!9.59e-14!102;UBERON:0000924!9.59e-14!102;UBERON:0006601!9.59e-14!102;UBERON:0002346!1.78e-13!71;UBERON:0003075!1.78e-13!71;UBERON:0007284!1.78e-13!71;UBERON:0003056!1.81e-13!49;UBERON:0003080!1.17e-12!40;UBERON:0002780!1.30e-12!39;UBERON:0001890!1.30e-12!39;UBERON:0006240!1.30e-12!39;UBERON:0000153!1.92e-12!94;UBERON:0002791!2.21e-12!29;UBERON:0003528!2.21e-12!29;UBERON:0001893!2.21e-12!29;UBERON:0007811!1.61e-11!86;UBERON:0000956!2.35e-08!21;UBERON:0001869!2.35e-08!21;UBERON:0000203!2.35e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.21e-18,54;UBERON:0001017,2.52e-17,73;UBERON:0001049,1.01e-16,52;UBERON:0005068,1.01e-16,52;UBERON:0006241,1.01e-16,52;UBERON:0007135,1.01e-16,52;UBERON:0002020,1.06e-16,34;UBERON:0001016,3.62e-16,75;UBERON:0002346,1.88e-15,64;UBERON:0003075,1.88e-15,64;UBERON:0007284,1.88e-15,64;UBERON:0004121,4.69e-15,95;UBERON:0000924,4.69e-15,95;UBERON:0006601,4.69e-15,95;UBERON:0010371,4.71e-15,73;UBERON:0000955,7.21e-15,47;UBERON:0006238,7.21e-15,47;UBERON:0002616,3.69e-14,46;UBERON:0003056,1.67e-13,49;UBERON:0003528,2.92e-13,29;UBERON:0002791,2.92e-13,29;UBERON:0001893,2.92e-13,29;UBERON:0003080,5.77e-13,40;UBERON:0002780,6.66e-13,39;UBERON:0001890,6.66e-13,39;UBERON:0006240,6.66e-13,39;UBERON:0010314,6.61e-11,92;UBERON:0000956,9.28e-09,21;UBERON:0001869,9.28e-09,21;UBERON:0000203,9.28e-09,21 | |||
|phase1_expression=8.48788889655408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,1.31790010585369,0.550640256485045,10.1710874765245,2.39827672018491,1.5378032791413,0.777719596297134,3.49966054063406,2.87505128729943,0,0,0,0.257259436035947,1.14613375975503,0.515672092277442,27.7173551377649,25.3915670050576,20.2826049121977,1.35537812827653,4.4464739805557,0,0.988866362566974,0.7104801149461,6.2916023208865,7.68436610643109,25.0928861786516,26.191152036348,18.718921560273,13.139945282575,8.39300455616131,8.45186514583183,9.58454710182364,7.35375029288017,1.10115880999389,3.31987079021488,4.45458946443106,21.2336923245612,24.7016637726506,22.9201883044974,3.62937898701795,5.06486349028512,6.57032465440283,15.0260578591571,12.9558229527184,12.6751623161204,0.37863096666592,0.151143120213571,0,0,0,0,0,0,0.983110940922263,2.55645483867087,0.259786004602869,2.12003744706204,10.7040999030277,10.2661181931454,33.1246811618639,14.2213340630666,0,0,0,0.11418387971906,0,0.148442139064825,1.21439728736295,1.21786191324856,0.230615497256059,0.452167921657868,1.17588707135705,0,0,0.289198713839823,0.884610551949874,2.75003644910596,1.98757366614354,1.93950101254089,0,2.34224637609238,2.93225389538837,0,8.98613433794402,4.79922184794726,6.22644112658017,2.09706895166752,3.66000482254901,7.79056983099759,3.12883776346098,5.8814555185976,2.49345653471472,3.40706652442291,1.01839363850316,0.373220911830279,0.252722758433675,0.841767423545896,1.43132487258974,2.06911893990126,2.16074555766419,1.65775299619287,1.7009124787832,2.8185018462667,5.05989312622536,3.88055056108524,2.58681591519411,2.08016688184601,4.39877810409872,1.97276159184817,1.94633074457919,4.52727816478817,2.67516777330327,1.59227413454795,0,3.08817488537658,1.98914449576915,1.44988040774851,1.17263029990548,2.34080679899319,3.31442629819294,1.57411385397923,1.07986979021165,2.79040733700489,1.60964040839772,0.233530684734339,1.31647879930784,0.32833492815819,0.56748166682099,0.146199987425332,0.439100230582101,0.402619256281115,10.0939175310781,18.6257348406505,0,0,0.426576501070468,0.696710015581316,0.644337306610467,1.61346819698674,1.33426826306922,0.380451252225118,0,0.494096864172033,0.754005626400808,0,0.58489226135736,0,0,0,0.379335801906163,0.342745537829186,2.25415471346161,0.610953983535943,0.387904974335251,0.561086559122548,0.0632365371242573,0,0,0,0,0.83422552858047,0.393117990226406,0,0.405720242777006,0,0.50925170356284,0.287696137450811,0.162135226775035,0.549122826376163,0,0,0,0,0.179397413521912,0,0,1.51593129416388,3.25929952884052,1.52770577197669,3.52035372432753,2.1775813467436,0.238043640886014,0.975668239288994,2.20689201748667,2.43611158613652,1.2756381492599,0,0,0,0,0,0,0,2.0871576698413,1.52375192569864,0.163934945376675,3.7870639080656,0.315508219416257,0.390438744296638,0,0,0,0.283076530788832,0.809621403349789,1.16902343164525,0.790575555893047,24.7417413644791,0.141940085208269,1.42452482933804,0.488660878060728,0.164970122972535,0,0.242780636154981,0.604647113929502,0.754420319023592,0.295301892880773,0.307435147943927,0.516856586336442,0,0.356497378384721,0,0,0,0.340439605753788,1.44048875225048,1.81102157295856,2.14337035031592,0.886701168211368,4.99432689285798,4.27827453565514,1.8267896946876,0.23467170806371,0,0,2.30840754118072,0.322928853391811,1.68876189798836,1.55184047204077,1.14898629821543,0,0.741701208042039,0,1.23832120777933,1.29636169158798,0.376736914009382,0,0.228778173206523,10.7086410896129,10.3564074719507,9.53579819250524,0,0.632671987162271,4.47302827679067,0.972048067396211,1.88179466413022,1.74690050996942,1.07891477107857,2.23164330458407,0.785267825952089,0.129614973291793,0,0,2.8408143748356,1.15820943319968,3.69457257853691,5.16639293910924,5.74450826668646,5.16371850041317,2.47388331203505,0.419437377702843,0.241584120826006,1.44015003128933,3.16011120628178,2.63542779877213,2.46506297195585,0.51968329191118,0.716106782669926,1.19208812868759,0.600977247599844,0.443068581523732,0.403865799792591,0.381034033274999,0.504130925684203,0,0.577271049841977,0.935015217452552,0.453460767230423,0,0.179427713218951,0.167884616364078,0.579568782096571,0,0.183151624267265,0.643105137237198,0,6.7770221114048,8.28585425712918,10.8850147553485,8.42080593484069,1.37016503954128,5.2877572817279,2.02506750069542,3.15224842256954,4.53142408984205,1.03552062350364,0.93408612825759,7.18244772121856,3.41467211508268,4.86213434136588,2.72497111416377,2.94149613520023,2.44471400581777,3.7086310303001,3.20919209591815,2.77966932940177,2.78827229879264,2.82939512079114,2.80924522409647,3.39333307745807,3.21638626151434,3.81034953026459,4.51948871184936,3.08654752741928,2.88460130562315,3.38557516309114,2.05721551431249,2.30718548007139,3.57654284920981,3.34296758254356,4.14081273827455,2.79228206042532,4.024415403201,2.10455769150274,2.30866993537965,3.36685362994643,3.08451047122853,2.65962102414021,2.86461730218783,3.40861050609125,2.3148793317737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| |||
|short_description=p1@Mdga1 | |||
}} |
Latest revision as of 05:19, 26 September 2015
Short description: | p1@Mdga1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mdga1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 35bp_to_ENSMUST00000171691_5end |
EntrezGene: | Mdga1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.91e-15 | 23 |
neuroblast (sensu Vertebrata) | 4.91e-15 | 23 |
ectodermal cell | 1.12e-09 | 44 |
neurectodermal cell | 1.12e-09 | 44 |
neural cell | 3.98e-09 | 43 |
neuron | 1.46e-08 | 33 |
neuronal stem cell | 1.46e-08 | 33 |
neuroblast | 1.46e-08 | 33 |
electrically signaling cell | 1.46e-08 | 33 |
electrically responsive cell | 8.05e-07 | 39 |
electrically active cell | 8.05e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 4.21e-18 | 54 |
central nervous system | 2.52e-17 | 73 |
neural tube | 1.01e-16 | 52 |
neural rod | 1.01e-16 | 52 |
future spinal cord | 1.01e-16 | 52 |
neural keel | 1.01e-16 | 52 |
gray matter | 1.06e-16 | 34 |
nervous system | 3.62e-16 | 75 |
neurectoderm | 1.88e-15 | 64 |
neural plate | 1.88e-15 | 64 |
presumptive neural plate | 1.88e-15 | 64 |
ectoderm-derived structure | 4.69e-15 | 95 |
ectoderm | 4.69e-15 | 95 |
presumptive ectoderm | 4.69e-15 | 95 |
ecto-epithelium | 4.71e-15 | 73 |
brain | 7.21e-15 | 47 |
future brain | 7.21e-15 | 47 |
regional part of brain | 3.69e-14 | 46 |
pre-chordal neural plate | 1.67e-13 | 49 |
brain grey matter | 2.92e-13 | 29 |
regional part of telencephalon | 2.92e-13 | 29 |
telencephalon | 2.92e-13 | 29 |
anterior neural tube | 5.77e-13 | 40 |
regional part of forebrain | 6.66e-13 | 39 |
forebrain | 6.66e-13 | 39 |
future forebrain | 6.66e-13 | 39 |
structure with developmental contribution from neural crest | 6.61e-11 | 92 |
cerebral cortex | 9.28e-09 | 21 |
cerebral hemisphere | 9.28e-09 | 21 |
pallium | 9.28e-09 | 21 |