FFCP PHASE1:Hg19::chrX:152770299..152770310,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:152770299..152770310,+
|short_description=p13@BGN
|description=CAGE_peak_13_at_BGN_5end
|association_with_transcript=154bp_to_AK298756_5end
|EntrezGene=63...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=633 | |EntrezGene=633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1044 | |HGNC=1044 | ||
|TSSclassifier=strong | |||
|UniProt=B4DQD6 | |UniProt=B4DQD6 | ||
|association_with_transcript=154bp_to_AK298756_5end | |||
|cluster_id=chrX:152770299..152770310,+ | |||
|coexpression_cluster_id=C288 | |||
|description=CAGE_peak_13_at_BGN_5end | |||
|id=chrX:152770299..152770310,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.41e-21!180;CL:0000057!2.88e-14!75;CL:0000183!4.32e-12!59;CL:0000359!3.56e-11!32;CL:0000187!7.66e-11!54;CL:0000680!3.71e-10!57;CL:0000056!3.71e-10!57;CL:0000355!3.71e-10!57;CL:0000222!4.20e-10!119;CL:0000192!1.16e-09!42;CL:0000514!1.16e-09!42;CL:0000393!4.80e-09!60;CL:0000211!4.80e-09!60;CL:0000327!2.40e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000327;2.12e-11;15!CL:0000499;5.12e-08;28!CL:0002494;9.18e-08;16!CL:0000359;1.81e-07;32!CL:0000153;2.25e-07;9!CL:0000447;2.25e-07;9!CL:0002620;2.93e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.57e-15,76;CL:0000327,1.33e-11,15;CL:0000048,2.88e-09,427;CL:0000723,8.94e-09,433;CL:0000034,3.80e-08,441;CL:0000499,3.84e-08,28;CL:0002494,9.65e-08,16;CL:0000359,1.69e-07,32;CL:0002320,2.02e-07,361;CL:0000153,2.34e-07,9;CL:0000447,2.34e-07,9;CL:0002620,2.49e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;9.95e-07;5!DOID:450;9.95e-07;5!DOID:66;9.95e-07;5!DOID:423;9.95e-07;5!DOID:0080000;9.95e-07;5!DOID:11722;9.95e-07;5 | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!7.69e-20!84;UBERON:0002049!1.18e-18!79;UBERON:0007798!1.18e-18!79;UBERON:0001981!6.77e-18!60;UBERON:0007500!6.77e-18!60;UBERON:0004537!6.77e-18!60;UBERON:0006965!6.77e-18!60;UBERON:0000055!1.85e-16!69;UBERON:0001009!5.52e-16!113;UBERON:0004535!6.98e-16!110;UBERON:0001637!3.02e-15!42;UBERON:0003509!3.02e-15!42;UBERON:0004572!3.02e-15!42;UBERON:0003914!1.31e-14!118;UBERON:0004573!9.24e-13!33;UBERON:0004571!9.24e-13!33;UBERON:0000025!6.52e-12!194;UBERON:0000477!8.54e-12!286;UBERON:0001134!1.02e-10!61;UBERON:0002036!1.02e-10!61;UBERON:0003082!1.02e-10!61;UBERON:0002385!1.24e-10!63;UBERON:0001015!1.24e-10!63;UBERON:0000383!1.24e-10!63;UBERON:0004111!2.17e-10!241;UBERON:0000914!4.73e-10!83;UBERON:0002329!4.73e-10!83;UBERON:0003077!4.73e-10!83;UBERON:0003059!4.73e-10!83;UBERON:0007282!4.73e-10!83;UBERON:0009618!4.73e-10!83;UBERON:0007285!4.73e-10!83;UBERON:0004290!1.66e-09!70;UBERON:0000947!1.51e-08!21;UBERON:0010191!1.51e-08!21;UBERON:0000119!2.15e-08!312;UBERON:0000948!3.06e-08!24;UBERON:0005498!3.06e-08!24;UBERON:0004140!3.06e-08!24;UBERON:0009881!3.06e-08!24;UBERON:0004141!3.06e-08!24;UBERON:0003084!3.06e-08!24;UBERON:0007005!3.06e-08!24;UBERON:0004139!3.06e-08!24;UBERON:0004291!3.06e-08!24;UBERON:0007100!4.43e-08!27;UBERON:0000483!1.49e-07!309;UBERON:0005256!1.97e-07!143;UBERON:0000475!2.07e-07!365;UBERON:0000486!2.44e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.83e-10;33!UBERON:0004571;1.83e-10;33!UBERON:0001637;1.09e-09;42!UBERON:0003509;1.09e-09;42!UBERON:0004572;1.09e-09;42!UBERON:0000947;8.84e-09;21!UBERON:0010191;8.84e-09;21!UBERON:0000948;1.17e-08;22!UBERON:0007100;3.52e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,8.59e-16,83;UBERON:0001637,7.55e-13,42;UBERON:0003509,7.55e-13,42;UBERON:0004572,7.55e-13,42;UBERON:0007500,1.29e-12,59;UBERON:0001981,1.29e-12,59;UBERON:0004537,1.29e-12,59;UBERON:0006965,1.29e-12,59;UBERON:0003914,4.44e-12,117;UBERON:0004535,1.57e-11,109;UBERON:0000055,2.53e-11,68;UBERON:0004573,2.56e-11,33;UBERON:0004571,2.56e-11,33;UBERON:0001009,6.81e-11,112;UBERON:0002049,1.35e-10,78;UBERON:0007798,1.35e-10,78;UBERON:0000948,9.22e-09,24;UBERON:0005498,9.22e-09,24;UBERON:0004140,9.22e-09,24;UBERON:0009881,9.22e-09,24;UBERON:0004141,9.22e-09,24;UBERON:0003084,9.22e-09,24;UBERON:0007005,9.22e-09,24;UBERON:0004139,9.22e-09,24;UBERON:0004291,9.22e-09,24;UBERON:0000947,9.97e-09,21;UBERON:0010191,9.97e-09,21;UBERON:0002384,2.09e-07,371;UBERON:0007100,2.37e-07,27 | |||
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| ||
|short_description=p13@BGN | |||
}} | }} |
Latest revision as of 23:45, 19 September 2015
Short description: | p13@BGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_BGN_5end |
Coexpression cluster: | C288_Chondrocyte_Renal_Pericytes_Fibroblast_aorta_Smooth_Meningeal |
Association with transcript: | 154bp_to_AK298756_5end |
EntrezGene: | BGN |
HGNC: | 1044 |
UniProt: | B4DQD6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.57e-15 | 76 |
extracellular matrix secreting cell | 1.33e-11 | 15 |
multi fate stem cell | 2.88e-09 | 427 |
somatic stem cell | 8.94e-09 | 433 |
stem cell | 3.80e-08 | 441 |
stromal cell | 3.84e-08 | 28 |
cardiocyte | 9.65e-08 | 16 |
vascular associated smooth muscle cell | 1.69e-07 | 32 |
connective tissue cell | 2.02e-07 | 361 |
GAG secreting cell | 2.34e-07 | 9 |
carbohydrate secreting cell | 2.34e-07 | 9 |
skin fibroblast | 2.49e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 8.59e-16 | 83 |
artery | 7.55e-13 | 42 |
arterial blood vessel | 7.55e-13 | 42 |
arterial system | 7.55e-13 | 42 |
epithelial tube open at both ends | 1.29e-12 | 59 |
blood vessel | 1.29e-12 | 59 |
blood vasculature | 1.29e-12 | 59 |
vascular cord | 1.29e-12 | 59 |
epithelial tube | 4.44e-12 | 117 |
cardiovascular system | 1.57e-11 | 109 |
vessel | 2.53e-11 | 68 |
systemic artery | 2.56e-11 | 33 |
systemic arterial system | 2.56e-11 | 33 |
circulatory system | 6.81e-11 | 112 |
vasculature | 1.35e-10 | 78 |
vascular system | 1.35e-10 | 78 |
heart | 9.22e-09 | 24 |
primitive heart tube | 9.22e-09 | 24 |
primary heart field | 9.22e-09 | 24 |
anterior lateral plate mesoderm | 9.22e-09 | 24 |
heart tube | 9.22e-09 | 24 |
heart primordium | 9.22e-09 | 24 |
cardiac mesoderm | 9.22e-09 | 24 |
cardiogenic plate | 9.22e-09 | 24 |
heart rudiment | 9.22e-09 | 24 |
aorta | 9.97e-09 | 21 |
aortic system | 9.97e-09 | 21 |
connective tissue | 2.09e-07 | 371 |
primary circulatory organ | 2.37e-07 | 27 |