FFCP PHASE1:Mm9::chr16:91485312..91485350,+: Difference between revisions
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{{FFCP|EntrezGene=15975|HGNC=|MCL_coexpression_id=482|UniProt=P33896|association_with_transcript=-109bp_to_NM_010508,uc007zxn.2,uc007zxo.2,uc007zxp.2_5end|description=CAGE_peak_2_at_Ifnar1_5end|id=chr16:91485312..91485350,+|ontology_enrichment_celltype=CL:0000117!9.40e-09!23;CL:0000337!9.40e-09!23;CL:0000540!8.78e-07!33;CL:0000047!8.78e-07!33;CL:0000031!8.78e-07!33;CL:0000404!8.78e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,5.86e-09,23;CL:0000337,5.86e-09,23;CL:0000540,3.67e-07,33;CL:0000047,3.67e-07,33;CL:0000031,3.67e-07,33;CL:0000404,3.67e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.34e-18!94;UBERON:0007811!2.65e-16!86;UBERON:0003056!2.12e-13!49;UBERON:0000033!2.17e-13!63;UBERON:0001049!6.95e-12!52;UBERON:0005068!6.95e-12!52;UBERON:0006241!6.95e-12!52;UBERON:0007135!6.95e-12!52;UBERON:0000955!9.52e-12!50;UBERON:0006238!9.52e-12!50;UBERON:0002616!2.83e-11!49;UBERON:0002346!3.01e-11!71;UBERON:0003075!3.01e-11!71;UBERON:0007284!3.01e-11!71;UBERON:0003080!3.90e-11!40;UBERON:0001017!4.64e-11!73;UBERON:0005743!4.64e-11!73;UBERON:0002780!7.23e-11!39;UBERON:0001890!7.23e-11!39;UBERON:0006240!7.23e-11!39;UBERON:0000073!1.68e-10!75;UBERON:0001016!1.68e-10!75;UBERON:0004121!2.80e-10!102;UBERON:0000924!2.80e-10!102;UBERON:0006601!2.80e-10!102;UBERON:0002020!2.01e-08!34;UBERON:0002791!2.43e-07!29;UBERON:0003528!2.43e-07!29;UBERON:0001893!2.43e-07!29;UBERON:0000475!3.95e-07!200|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.49e-13,49;UBERON:0010371,3.21e-13,73;UBERON:0002346,3.30e-13,64;UBERON:0003075,3.30e-13,64;UBERON:0007284,3.30e-13,64;UBERON:0000073,2.32e-12,54;UBERON:0004121,2.75e-12,95;UBERON:0000924,2.75e-12,95;UBERON:0006601,2.75e-12,95;UBERON:0001017,8.65e-12,73;UBERON:0001049,9.42e-12,52;UBERON:0005068,9.42e-12,52;UBERON:0006241,9.42e-12,52;UBERON:0007135,9.42e-12,52;UBERON:0003080,3.74e-11,40;UBERON:0001016,4.60e-11,75;UBERON:0000955,6.91e-11,47;UBERON:0006238,6.91e-11,47;UBERON:0002780,7.18e-11,39;UBERON:0001890,7.18e-11,39;UBERON:0006240,7.18e-11,39;UBERON:0002616,2.11e-10,46;UBERON:0010314,3.74e-09,92;UBERON:0002020,2.55e-08,34;UBERON:0000153,1.79e-07,43;UBERON:0003528,3.55e-07,29;UBERON:0002791,3.55e-07,29;UBERON:0001893,3.55e-07,29|phase1_expression=3.20297694209588,0.348975407639361,0,0.30246421130683,0,0.16787927191189,0,1.29123323441576,0,0.234064526321993,0.34243593645101,0.239316476986009,1.54080656938085,1.48614684112296,0.333109761815663,0.404950534779652,0.699561878128147,0.315462165358238,0,0.42438965179803,1.7008658030214,1.09220046320974,0.783599367416806,0,0.22940928106717,0,0,0,0.380046838912748,0.504060259519861,0,0,0,0,0,0.166234645358492,0.204169356262369,0.837063261473815,0.7813353445238,0,1.17646297606203,0,0.971020706062307,0.125896817975577,0.202753862439029,0.550640256485045,0.782391344348039,0.436050312760893,1.31811709640683,1.1665793944457,1.53985063787899,0,0.167782606057736,0.725362142011344,0.336093799142464,0,0.286533439938757,1.03134418455488,7.48570905180512,4.7609188134483,5.07065122804943,0.677689064138264,1.77858959222228,0,0.988866362566974,0,0,0,6.63613518774257,8.50537411489651,5.46844899513593,3.42781181284564,1.76694832761291,6.00204916153275,11.6931474642248,7.35375029288017,2.20231761998777,3.57524546638526,1.99688493233117,7.25374582516066,8.14240028061446,10.4182674111352,0.558365998002762,0.56276261003168,2.59757021220577,2.06240009831567,2.42031857358475,3.35519002485541,1.06016670666458,0.68014404096107,0.579728977403356,0,0,0,0.649776417447669,0.896053774194671,0.983110940922263,0.681721290312231,0.779358013808606,0.35333957451034,1.69012103732017,0,2.54805239706646,7.11066703153331,0,0.253359865475099,0.505524445014783,0.45673551887624,1.55362730188303,0.742210695324124,2.25530924795977,1.21786191324856,0.922461989024234,1.05505848386836,0.470354828542819,0.376999773989026,0.988779870937496,2.16899035379867,0.884610551949874,0.970601099684455,2.20841518460394,0.969750506270444,0,2.63502717310392,5.02672096352292,0.255457055208591,0.479260498023681,1.19980546198682,0.508280908292259,2.69623150928681,4.11750542536764,7.413606774659,4.17178368461463,5.8814555185976,2.0778804455956,3.24482526135515,1.2220723662038,1.24406970610093,1.51633655060205,1.26265113531884,1.30120442962704,2.06911893990126,2.88099407688559,4.21973489940002,4.35433594568498,3.20284300712124,4.68508622798644,3.62184719034622,5.17363183038821,3.21480336285293,3.16712023495108,3.94552318369635,3.33656699070717,2.089512999133,1.23469281844766,1.59227413454795,0,0,0.284163499395593,1.65700618028402,1.64168241986767,1.08037236876609,1.42046841351126,1.18058539048442,1.69693824176116,1.86027155800326,2.14618721119695,1.86824547787471,1.81015834904829,0.820837320395476,1.29710095273369,0.146199987425332,1.3173006917463,1.07365135008297,3.78521907415429,7.10041825417063,0.330418782983798,0,3.19932375802851,2.55460339046482,1.9330119198314,1.61346819698674,1.55664630691409,0.380451252225118,0,0.823494773620054,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=15975 | |||
|HGNC= | |||
|MCL_coexpression_id=482 | |||
|TSSclassifier=NA | |||
|UniProt=P33896 | |||
|association_with_transcript=-109bp_to_NM_010508,uc007zxn.2,uc007zxo.2,uc007zxp.2_5end | |||
|cluster_id=chr16:91485312..91485350,+ | |||
|description=CAGE_peak_2_at_Ifnar1_5end | |||
|id=chr16:91485312..91485350,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.40e-09!23;CL:0000337!9.40e-09!23;CL:0000540!8.78e-07!33;CL:0000047!8.78e-07!33;CL:0000031!8.78e-07!33;CL:0000404!8.78e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.86e-09,23;CL:0000337,5.86e-09,23;CL:0000540,3.67e-07,33;CL:0000047,3.67e-07,33;CL:0000031,3.67e-07,33;CL:0000404,3.67e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.34e-18!94;UBERON:0007811!2.65e-16!86;UBERON:0003056!2.12e-13!49;UBERON:0000033!2.17e-13!63;UBERON:0001049!6.95e-12!52;UBERON:0005068!6.95e-12!52;UBERON:0006241!6.95e-12!52;UBERON:0007135!6.95e-12!52;UBERON:0000955!9.52e-12!50;UBERON:0006238!9.52e-12!50;UBERON:0002616!2.83e-11!49;UBERON:0002346!3.01e-11!71;UBERON:0003075!3.01e-11!71;UBERON:0007284!3.01e-11!71;UBERON:0003080!3.90e-11!40;UBERON:0001017!4.64e-11!73;UBERON:0005743!4.64e-11!73;UBERON:0002780!7.23e-11!39;UBERON:0001890!7.23e-11!39;UBERON:0006240!7.23e-11!39;UBERON:0000073!1.68e-10!75;UBERON:0001016!1.68e-10!75;UBERON:0004121!2.80e-10!102;UBERON:0000924!2.80e-10!102;UBERON:0006601!2.80e-10!102;UBERON:0002020!2.01e-08!34;UBERON:0002791!2.43e-07!29;UBERON:0003528!2.43e-07!29;UBERON:0001893!2.43e-07!29;UBERON:0000475!3.95e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.49e-13,49;UBERON:0010371,3.21e-13,73;UBERON:0002346,3.30e-13,64;UBERON:0003075,3.30e-13,64;UBERON:0007284,3.30e-13,64;UBERON:0000073,2.32e-12,54;UBERON:0004121,2.75e-12,95;UBERON:0000924,2.75e-12,95;UBERON:0006601,2.75e-12,95;UBERON:0001017,8.65e-12,73;UBERON:0001049,9.42e-12,52;UBERON:0005068,9.42e-12,52;UBERON:0006241,9.42e-12,52;UBERON:0007135,9.42e-12,52;UBERON:0003080,3.74e-11,40;UBERON:0001016,4.60e-11,75;UBERON:0000955,6.91e-11,47;UBERON:0006238,6.91e-11,47;UBERON:0002780,7.18e-11,39;UBERON:0001890,7.18e-11,39;UBERON:0006240,7.18e-11,39;UBERON:0002616,2.11e-10,46;UBERON:0010314,3.74e-09,92;UBERON:0002020,2.55e-08,34;UBERON:0000153,1.79e-07,43;UBERON:0003528,3.55e-07,29;UBERON:0002791,3.55e-07,29;UBERON:0001893,3.55e-07,29 | |||
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| |||
|short_description=p2@Ifnar1 | |||
}} |
Latest revision as of 20:33, 25 September 2015
Short description: | p2@Ifnar1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ifnar1_5end |
Coexpression cluster: | MCL_coexpression_mm9:482 |
Association with transcript: | -109bp_to_NM_010508, uc007zxn.2, uc007zxo.2, uc007zxp.2_5end |
EntrezGene: | Ifnar1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.86e-09 | 23 |
neuroblast (sensu Vertebrata) | 5.86e-09 | 23 |
neuron | 3.67e-07 | 33 |
neuronal stem cell | 3.67e-07 | 33 |
neuroblast | 3.67e-07 | 33 |
electrically signaling cell | 3.67e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 1.49e-13 | 49 |
ecto-epithelium | 3.21e-13 | 73 |
neurectoderm | 3.30e-13 | 64 |
neural plate | 3.30e-13 | 64 |
presumptive neural plate | 3.30e-13 | 64 |
regional part of nervous system | 2.32e-12 | 54 |
ectoderm-derived structure | 2.75e-12 | 95 |
ectoderm | 2.75e-12 | 95 |
presumptive ectoderm | 2.75e-12 | 95 |
central nervous system | 8.65e-12 | 73 |
neural tube | 9.42e-12 | 52 |
neural rod | 9.42e-12 | 52 |
future spinal cord | 9.42e-12 | 52 |
neural keel | 9.42e-12 | 52 |
anterior neural tube | 3.74e-11 | 40 |
nervous system | 4.60e-11 | 75 |
brain | 6.91e-11 | 47 |
future brain | 6.91e-11 | 47 |
regional part of forebrain | 7.18e-11 | 39 |
forebrain | 7.18e-11 | 39 |
future forebrain | 7.18e-11 | 39 |
regional part of brain | 2.11e-10 | 46 |
structure with developmental contribution from neural crest | 3.74e-09 | 92 |
gray matter | 2.55e-08 | 34 |
anterior region of body | 1.79e-07 | 43 |
brain grey matter | 3.55e-07 | 29 |
regional part of telencephalon | 3.55e-07 | 29 |
telencephalon | 3.55e-07 | 29 |