FFCP PHASE1:Hg19::chr5:130727766..130727808,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56990 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18547 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-85bp_to_ENST00000506929_5end | |||
|cluster_id=chr5:130727766..130727808,+ | |||
|description=CAGE_peak_7_at_CDC42SE2_5end | |||
|id=chr5:130727766..130727808,+ | |||
|ontology_enrichment_celltype=CL:0000037!6.86e-14!172;CL:0000566!6.86e-14!172;CL:0002032!8.09e-13!165;CL:0000837!8.09e-13!165;CL:0000988!4.63e-11!182;CL:0000738!4.77e-11!140;CL:0002087!1.88e-09!119;CL:0000763!1.07e-08!112;CL:0000049!1.07e-08!112;CL:0002031!3.83e-08!124 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,5.54e-11,168;CL:0000738,1.27e-10,136;CL:0002032,3.37e-10,161;CL:0000837,3.37e-10,161;CL:0002087,6.96e-10,115;CL:0000988,9.61e-10,177;CL:0002031,2.23e-07,120;CL:0000766,7.05e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.02e-11!115;UBERON:0001049!5.39e-11!57;UBERON:0005068!5.39e-11!57;UBERON:0006241!5.39e-11!57;UBERON:0007135!5.39e-11!57;UBERON:0003080!4.49e-10!42;UBERON:0002020!6.00e-10!34;UBERON:0003528!6.00e-10!34;UBERON:0002780!8.05e-10!41;UBERON:0001890!8.05e-10!41;UBERON:0006240!8.05e-10!41;UBERON:0002791!9.18e-09!33;UBERON:0001893!1.66e-08!34;UBERON:0001869!3.92e-08!32;UBERON:0002616!5.17e-08!59;UBERON:0002346!1.08e-07!90;UBERON:0000955!2.27e-07!69;UBERON:0006238!2.27e-07!69;UBERON:0002619!3.18e-07!22;UBERON:0003075!3.48e-07!86;UBERON:0007284!3.48e-07!86;UBERON:0001017!7.73e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;6.45e-13;34!UBERON:0002020;6.45e-13;34!UBERON:0002791;1.08e-12;32!UBERON:0002619;4.98e-12;22!UBERON:0001869;7.12e-12;32!UBERON:0002780;3.76e-11;41!UBERON:0001890;3.76e-11;41!UBERON:0001893;1.89e-10;34!UBERON:0000956;3.67e-10;25!UBERON:0000203;3.67e-10;25!UBERON:0001950;1.38e-09;20!UBERON:0000073;8.53e-09;53!UBERON:0002616;8.53e-09;53!UBERON:0000125;4.41e-08;9!UBERON:0002308;4.41e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.09e-17,56;UBERON:0005068,3.09e-17,56;UBERON:0006241,3.09e-17,56;UBERON:0007135,3.09e-17,56;UBERON:0003528,1.21e-16,34;UBERON:0002020,1.21e-16,34;UBERON:0000073,1.11e-15,53;UBERON:0002616,1.11e-15,53;UBERON:0002791,2.60e-14,32;UBERON:0002780,3.38e-14,41;UBERON:0001890,3.38e-14,41;UBERON:0003080,3.38e-14,41;UBERON:0006240,3.38e-14,41;UBERON:0001893,3.75e-13,34;UBERON:0001869,9.32e-13,32;UBERON:0003075,1.97e-12,82;UBERON:0007284,1.97e-12,82;UBERON:0002619,3.08e-12,22;UBERON:0002346,2.03e-11,86;UBERON:0000955,4.54e-11,68;UBERON:0006238,4.54e-11,68;UBERON:0001017,8.74e-11,81;UBERON:0001016,1.83e-10,89;UBERON:0000956,2.43e-10,25;UBERON:0000203,2.43e-10,25;UBERON:0001950,9.45e-10,20;UBERON:0010371,3.28e-09,104;UBERON:0003056,3.69e-09,61;UBERON:0007023,1.56e-08,114;UBERON:0000125,2.48e-08,9;UBERON:0002308,2.48e-08,9 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0,0.975865597581014,0,0,0,0,0.410623275218653,0.251085279189606,0.382067028739756,0.164201178899891,0.314843125254717,1.18009283054671,1.53531759238885,0.77408061658038,0.919421224478927,0.30120591877825,0,0.154934401160603,0.995184627411951,0.880801318004542,1.10799081706375,2.60707781711184,3.25516306073778,0.223915474239924,0,0.77272670290256,1.01778767145695,1.13362783106643,0.970336244751265,1.85943229524548,0.411167888021826,0.309706370895104,2.3015391385772,2.81776777182011,0.709446689665756,1.37898272294647,0.645484683583826,0,1.12945403725563,0,0.224723484445085,0.306083892370903,0,0,2.30895910130701,1.39624560335142,2.13112375266347,0.870627715885752,0,0.622822248995575,3.76872997885115,4.17186334736161,2.17188844705117,0.605399502633369,0.368277635987565,0.316462387440884,0.211255286311942,0,0.209658645508376,0.112328631146495,0,0.803627933485401,0,0.19891667719909,0,0,0.546138611262131,0,0.853460445133014,0,0,0,0,1.70763890732835,2.93618594685469,2.29363936875137,0,0.560508562981536,0.263384084775077,2.9506465517075,5.89516144123747,5.75684197198626,0.501559486172034,0.32592226663359,0.473447805734733,1.94826728407911,0.779873198196215,0.589211814949674,0.443067789167242,0.270803863765016,3.0741916734162,3.51160238411671,2.63100647365882,1.65810010671509,0.579606171470105,0.593146252648242,0.535081656179426,0,0.566546713487831,0.383220493601921,1.37450978193052,0.759059076058509,0.95569624297229,0,0,0.301150238155546,0.255973222308837,2.49861453104692,0.236777252044017,0,1.61285394579786,6.15112450302067,4.92402973201517,0,0,0,0,0.50133791063589,0,0,0,0.378139268656271,0.221729397462564,0.351339142772504,0.0654895377488563,0,0.370784442784429,0,0.696518949197069,0.797747763113191,0,0,0.371457501329565,0.198762407366705,0,0,0.56530794192401,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0.367663080345869,0.81014194788176,0.17859945656816,0.22452937262617,0.337834441449967,0,0,0,1.31780417436063,3.87780264148325,0.436094052142534,0.496971951695318,0,0,0,0.709336764396714,0,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0.570471821544449,0,0,0,0,0,0.122834317311768,0,2.37600571456411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0.57978255948989,0,0,0.121973706129595,0.397589304964456,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0.643240938192885,0,0,0,0.236613600079688,0.168584690078102,0,0.110293972732394,0,0,0,0.392442930250692,0,0,0,0,0,0,0,0,0.441463099414651,0.245976877086227,0.171567810298526,0.109750285408626,1.1240175325762,0,0.277765335475589,0,0,0,0.231860809950154,0.117408694235822,0.144366447761074,0.462985512576611,0.380508304469197,0,0,0.738651018262192,0,0.297262324577456,0,0,0.283550194484773,0.268675568108545,0.290633938513962,0,0,0.528290604079356,0,2.01767934783746,0.37872730027914,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,2.43247561282381,1.00451418286425,4.21667878966063,0,0,0,0,0.410952645100767,0,2.12961773587702,2.1673383622212,4.09692392233083,3.46526197955321,0.254094624222463,0,0,0,0.637938751653163,2.24702107184155,0,0.414415513436035,0.12269149171914,0.500170521059677,0,0.207970861530807,0.535286966391485,0.473107245101804,0.937131319941706,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,1.44737618286021,1.07857100409308,1.17400313583789,0,0,0,0,0.153461973288062,0.280660094433074,0,0.511707249066704,0.321707842287215,0,0,0,0.164254312027618,0,0.232420756919918,0.120859449591622,0.40101294060657,0.644566922551274,0.114814448164607,0.182091168006717,0.262248829918848,0,0,0,0,0.211103257785751,0,0,1.0795795805107,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0,0,0.214840489736547,0,0,0,0.165284915360978,0.960950336825531,0.127612712494584,1.31505115112215,0,0,0,0,0,0,0.18532421910392,0.429374660225974,0,0,0.190630193923825,0,0.42793898803392,0,0,0,0,0,0.202182481573316,0,0.842516912477962,0,0,0,0,0.424216295861138,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0.211107635297664,0,0,0,0.0962221127255121,0.670302275535787,0,0.376575203107117,0,0,0,0.459446800413919,0.507447609232169,0.764637207142375,1.13929437434833,1.66762242820452,0.822724546172388,0,1.08006287447623,0,0.106824071127473,0,0.490080431962063,1.11481905075431,0.144269212976445,0.0711418433484141,1.27541018183058,0.199579371432817,0,0.635020748171649,0,1.68478306868075,0.684704037099577,0.313359791546046,7.51903431270201,0.338583555603207,0.481764225311099,0.605399121573143,1.27753871307098,1.03051603426729,0,0.223676107892416,0.166849141711909,0.19538809540204,0.278406173895242,0,0.270455678475983,0.33307196799782,1.4098700508785,1.49712432326576,0,0.242721043499027,0.445773537109913,0.284136146806413,0.23874448473769,0.296964680832639,0.307160702099232,0,8.01815673539923,0,0.16480387422676,1.68900326502395,0.398495976502139,1.38141957765574,1.25966373927138,0.102268682502155,0.738508832766417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| |||
|short_description=p7@CDC42SE2 | |||
}} |
Latest revision as of 03:52, 20 September 2015
Short description: | p7@CDC42SE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_CDC42SE2_5end |
Coexpression cluster: | NA |
Association with transcript: | -85bp_to_ENST00000506929_5end |
EntrezGene: | CDC42SE2 |
HGNC: | 18547 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 5.54e-11 | 168 |
leukocyte | 1.27e-10 | 136 |
hematopoietic oligopotent progenitor cell | 3.37e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.37e-10 | 161 |
nongranular leukocyte | 6.96e-10 | 115 |
hematopoietic cell | 9.61e-10 | 177 |
hematopoietic lineage restricted progenitor cell | 2.23e-07 | 120 |
myeloid leukocyte | 7.05e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
neural tube | 3.09e-17 | 56 |
neural rod | 3.09e-17 | 56 |
future spinal cord | 3.09e-17 | 56 |
neural keel | 3.09e-17 | 56 |
brain grey matter | 1.21e-16 | 34 |
gray matter | 1.21e-16 | 34 |
regional part of nervous system | 1.11e-15 | 53 |
regional part of brain | 1.11e-15 | 53 |
regional part of telencephalon | 2.60e-14 | 32 |
regional part of forebrain | 3.38e-14 | 41 |
forebrain | 3.38e-14 | 41 |
anterior neural tube | 3.38e-14 | 41 |
future forebrain | 3.38e-14 | 41 |
telencephalon | 3.75e-13 | 34 |
cerebral hemisphere | 9.32e-13 | 32 |
neural plate | 1.97e-12 | 82 |
presumptive neural plate | 1.97e-12 | 82 |
regional part of cerebral cortex | 3.08e-12 | 22 |
neurectoderm | 2.03e-11 | 86 |
brain | 4.54e-11 | 68 |
future brain | 4.54e-11 | 68 |
central nervous system | 8.74e-11 | 81 |
nervous system | 1.83e-10 | 89 |
cerebral cortex | 2.43e-10 | 25 |
pallium | 2.43e-10 | 25 |
neocortex | 9.45e-10 | 20 |
ecto-epithelium | 3.28e-09 | 104 |
pre-chordal neural plate | 3.69e-09 | 61 |
adult organism | 1.56e-08 | 114 |
neural nucleus | 2.48e-08 | 9 |
nucleus of brain | 2.48e-08 | 9 |