FFCP PHASE1:Hg19::chrX:138287176..138287192,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:138287176..138287192,-
|short_description=p1@FGF13
|description=CAGE_peak_1_at_FGF13_5end
|association_with_transcript=0bp_to_NM_001139498,NM_001139500,NM_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2258 | |EntrezGene=2258 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3670 | |HGNC=3670 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z8N0,Q92913,B7Z4M7,D3DWH4 | |UniProt=B7Z8N0,Q92913,B7Z4M7,D3DWH4 | ||
|association_with_transcript=0bp_to_NM_001139498,NM_001139500,NM_001139501,uc004far.2,uc011mwj.1,uc011mwk.1_5end | |||
|cluster_id=chrX:138287176..138287192,- | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_1_at_FGF13_5end | |||
|id=chrX:138287176..138287192,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;3.27e-08;22!DOID:2994;3.27e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.59e-08,22;DOID:2994,3.59e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.56e-15!115;UBERON:0005743!1.44e-13!86;UBERON:0001017!1.45e-13!82;UBERON:0000073!3.84e-12!94;UBERON:0001016!3.84e-12!94;UBERON:0001049!1.84e-11!57;UBERON:0005068!1.84e-11!57;UBERON:0006241!1.84e-11!57;UBERON:0007135!1.84e-11!57;UBERON:0000468!2.22e-11!659;UBERON:0003080!5.30e-10!42;UBERON:0002346!8.12e-10!90;UBERON:0002616!8.39e-10!59;UBERON:0002780!1.14e-09!41;UBERON:0001890!1.14e-09!41;UBERON:0006240!1.14e-09!41;UBERON:0000955!2.02e-09!69;UBERON:0006238!2.02e-09!69;UBERON:0001869!2.26e-09!32;UBERON:0001893!2.49e-09!34;UBERON:0000956!2.55e-09!25;UBERON:0000203!2.55e-09!25;UBERON:0002020!2.58e-09!34;UBERON:0003528!2.58e-09!34;UBERON:0002791!5.13e-09!33;UBERON:0003075!3.15e-08!86;UBERON:0007284!3.15e-08!86;UBERON:0000467!3.44e-08!625;UBERON:0002619!4.26e-08!22;UBERON:0003101!4.32e-08!22;UBERON:0000079!4.32e-08!22;UBERON:0000480!4.85e-08!626;UBERON:0001950!1.40e-07!20;UBERON:0003056!2.79e-07!61;UBERON:0000922!4.01e-07!612;UBERON:0000924!5.30e-07!173;UBERON:0006601!5.30e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;3.72e-15;49!UBERON:0000956;2.91e-11;25!UBERON:0000203;2.91e-11;25!UBERON:0002619;9.43e-10;22!UBERON:0001950;4.93e-09;20!UBERON:0001869;5.34e-09;32!UBERON:0002791;3.08e-08;32!UBERON:0003528;3.88e-08;34!UBERON:0002020;3.88e-08;34!UBERON:0003101;6.67e-08;22!UBERON:0000079;6.67e-08;22!UBERON:0003135;8.56e-08;11!UBERON:0001893;8.96e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.26e-11,25;UBERON:0000203,2.26e-11,25;UBERON:0007023,9.15e-11,114;UBERON:0001017,3.98e-10,81;UBERON:0002619,7.46e-10,22;UBERON:0001869,7.66e-10,32;UBERON:0001016,1.53e-09,89;UBERON:0001950,3.25e-09,20;UBERON:0002791,6.38e-09,32;UBERON:0011216,7.57e-09,223;UBERON:0001893,8.72e-09,34;UBERON:0003528,9.61e-09,34;UBERON:0002020,9.61e-09,34;UBERON:0002780,1.44e-08,41;UBERON:0001890,1.44e-08,41;UBERON:0003080,1.44e-08,41;UBERON:0006240,1.44e-08,41;UBERON:0003101,4.98e-08,22;UBERON:0000079,4.98e-08,22;UBERON:0003135,7.29e-08,11;UBERON:0001049,9.16e-08,56;UBERON:0005068,9.16e-08,56;UBERON:0006241,9.16e-08,56;UBERON:0007135,9.16e-08,56;UBERON:0002346,1.49e-07,86;UBERON:0000073,1.74e-07,53;UBERON:0002616,1.74e-07,53 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,2.47532705920093,2.31978163009541,0,0,0,0,2.70866327768933,0.816002764977012,4.07491137921514,5.43848375549008,11.6343261311952,2.51085279189606,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,1.10799081706375,1.00272223735071,0.651032612147555,0,0,0,0,0,0.242584061187816,0.464858073811369,2.46700732813095,6.50383378879718,1.1507695692886,1.7931249457037,3.78371567821736,8.96338769915208,5.80936215225443,13.5426486594342,0.376484679085209,0,1.57306439111559,2.44867113896722,3.85114832491312,8.95071976118658,1.31940520074686,0.797854630486527,2.55734850319616,6.38460324982885,18.7237124148076,23.0444232128363,2.00998932205395,3.12889751052121,4.56096573880745,8.47559303686716,8.83866326370155,12.3420331101945,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80254281490768,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.724232594804119,2.3858578411533,1.45990461090791,6.33383274999255,1.33037638477538,3.86473057049755,1.96468613246569,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,8.26933629341852,13.519117982095,53.8900186551119,19.3358072212391,17.4862584315258,28.5552607331358,0.367663080345869,1.62028389576352,0.0892997282840798,0,0,0,0,0,0,50.4114343392823,0,0,0.12663051166458,0.397227542439656,1.72101972449288,0.709336764396714,0.560677600142307,0,0,0,0,0,2.11900398702904,1.72852777344,0.234321431833797,0.312160076830321,0,0.149448680551801,0,0,0,0.204154171254893,1.59684612505298,1.96318984233954,0,0,0,0,1.34668891163253,0.875829639103749,0,0,0,0,0,1.07633781413317,0.640672166455702,11.2323907614568,17.4052835728953,20.8166109061647,12.1091053821446,13.2142967995429,5.40084263172052,2.53336213419116,10.0973509697646,6.62759270224555,0,0,0,0,0,0,0,17.198292564273,9.80720285578991,14.2918549729508,22.8054321033815,19.1763846665478,1.82488679537915,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0.982827216677626,1.18157981336281,0,0.737930631258681,2.05881372358231,0.109750285408626,0,0.100528972411631,0,0,0,0,3.70977295920246,0.587043471179108,40.2782389253396,13.4265798647217,25.113548094967,11.8530659693891,11.1603201072333,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,3.4214489204541,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,2.00169191121407,0,0,1.95441710576241,1.06617584622764,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0.61642896765115,5.55088986043676,0,0,0,0.128343036279748,6.09827098133912,13.0139853857622,13.9191986299985,13.7363337574166,8.93114252314428,0,0,11.189218862773,4.41689370188904,0,0,0,0,0.157702415033935,0.35142424497814,0,0,0,0,0.368738337083406,0.781952530212746,0.195801157462741,0.686286847621712,0,0.215714200818617,0,0,0,0,0,0,0,0,2.04682899626681,0,0,0,0,0,0.519254429183621,0,3.86750238693191,0.200506470303285,0.644566922551274,5.0518357192427,5.82691737621495,15.6038053801715,0.902399225814824,1.15523005656622,0.784349769176855,0,1.05551628892876,0,0.680374821106063,4.96606607034921,7.71136263451447,0,0,0.509752546090077,0,0.223874754722178,0,0,0.512900250232778,0,0.650756789328606,1.854738209659,0.457847324091717,0.082509499920588,0,0,4.82051789532479,3.77015801339276,0.462145851343933,0.614014698904518,0.689182862422653,0.107420244868274,0.145016693914229,1.36362603865761,2.1367688555217,0,0,0,0.30347334256665,0.464845549297286,1.25924938732256,0,0,0,0,0.37064843820784,0.143124886741991,0,0,0,0,0.42793898803392,2.22742273548156,0,2.51821440616641,0.823611089208164,2.23843564456804,0.202182481573316,0,0,2.92580243453754,0,0,0.818999468447914,1.55545975149084,0,0,0,0,1.15755106853338,0.655894752046633,0,0.6196469961995,0,0,0,0,0,4.43326034125095,0.987884678879706,0,0,0,0,0,2.44773882019626,0,0,0,0,0.507447609232169,0.764637207142375,1.13929437434833,0.238231775457789,0,0,0,0,0,0,0.245040215981032,0,0,0,0.478278818186467,0,0,0,0.973865820823666,13.7590617275595,0.228234679033192,0,2.50634477090067,0,0,0,0,0,0,0.223676107892416,0.333698283423817,1.56310476321632,0,13.5396138842484,0,0,0,0,4.54175355742871,0,0,0,0.47748896947538,0,0,3.97659059106519,3.51673541026282,0,0,0,2.19172787076177,3.31540698637377,0,0,0,0,0,1.25314822272926,0,2.17015492401254,0,0,0.969332746095218,2.87581104301739,11.9768278800717,3.64598865519327,23.8765799989614,3.62499787717397,1.4793148277115,13.4754434655166,0,0,0.583209226766509,0,0,0.723578631752448,0,0.995213339381022,0.591095237907095,4.8264787373874,0,1.11538995422883,3.53971189117467,0,0,0,0,0,0,0.533034776018635,0,0.156980256395025,0,8.34703944283569,8.4306889756628,7.21632823996124,0.37950746544837,0,0,0,8.90524350033827,0,3.98104772431402,3.36138745112689,6.11030144933625,10.6747606325024,5.18968543575312,3.9680340812073,0.67401132980677,4.01288823649394,3.51396668588009,0,1.17398771359254,0,5.12959723704208,8.46935012340647,37.3408769189198,3.47526187956684,7.9671412289681,21.7745201934219,0,0,0,0,0,0,0,0,0,2.44617335538842,0,0,0,0,1.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| 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| ||
|short_description=p1@FGF13 | |||
}} | }} |
Latest revision as of 16:50, 19 September 2015
Short description: | p1@FGF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FGF13_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | 0bp_to_NM_001139498, NM_001139500, NM_001139501, uc004far.2, uc011mwj.1, uc011mwk.1_5end |
EntrezGene: | FGF13 |
HGNC: | 3670 |
UniProt: | B7Z8N0Q92913B7Z4M7D3DWH4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 2.26e-11 | 25 |
pallium | 2.26e-11 | 25 |
adult organism | 9.15e-11 | 114 |
central nervous system | 3.98e-10 | 81 |
regional part of cerebral cortex | 7.46e-10 | 22 |
cerebral hemisphere | 7.66e-10 | 32 |
nervous system | 1.53e-09 | 89 |
neocortex | 3.25e-09 | 20 |
regional part of telencephalon | 6.38e-09 | 32 |
organ system subdivision | 7.57e-09 | 223 |
telencephalon | 8.72e-09 | 34 |
brain grey matter | 9.61e-09 | 34 |
gray matter | 9.61e-09 | 34 |
regional part of forebrain | 1.44e-08 | 41 |
forebrain | 1.44e-08 | 41 |
anterior neural tube | 1.44e-08 | 41 |
future forebrain | 1.44e-08 | 41 |
male organism | 4.98e-08 | 22 |
male reproductive system | 4.98e-08 | 22 |
male reproductive organ | 7.29e-08 | 11 |
neural tube | 9.16e-08 | 56 |
neural rod | 9.16e-08 | 56 |
future spinal cord | 9.16e-08 | 56 |
neural keel | 9.16e-08 | 56 |
neurectoderm | 1.49e-07 | 86 |
regional part of nervous system | 1.74e-07 | 53 |
regional part of brain | 1.74e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.59e-08 | 22 |
germ cell cancer | 3.59e-08 | 22 |