FFCP PHASE1:Mm9::chr15:98465174..98465209,+: Difference between revisions
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{{FFCP|EntrezGene=12297|HGNC=|UniProt=G5E821|association_with_transcript=0bp_to_ENSMUST00000003442,NM_007581,uc007xnc.1,uc011zza.1_5end|description=CAGE_peak_1_at_Cacnb3_5end|id=chr15:98465174..98465209,+|ontology_enrichment_celltype=CL:0000055!4.71e-13!50;CL:0000221!1.43e-11!44;CL:0000133!1.43e-11!44;CL:0002319!2.14e-11!43;CL:0000393!4.91e-11!39;CL:0000211!4.91e-11!39;CL:0000540!1.58e-08!33;CL:0000047!1.58e-08!33;CL:0000031!1.58e-08!33;CL:0000404!1.58e-08!33;CL:0002321!5.60e-08!70;CL:0000220!5.60e-08!70;CL:0000117!5.31e-07!23;CL:0000337!5.31e-07!23|ontology_enrichment_celltype_v019_2=CL:0000221,1.39e-11,44;CL:0000133,1.39e-11,44;CL:0002319,2.08e-11,43;CL:0000393,4.77e-11,39;CL:0000211,4.77e-11,39;CL:0000540,1.54e-08,33;CL:0000047,1.54e-08,33;CL:0000031,1.54e-08,33;CL:0000404,1.54e-08,33;CL:0002321,5.03e-08,70;CL:0000117,5.22e-07,23;CL:0000337,5.22e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.89e-24!75;UBERON:0001016!1.89e-24!75;UBERON:0001017!3.24e-24!73;UBERON:0005743!3.24e-24!73;UBERON:0004121!4.82e-24!102;UBERON:0000924!4.82e-24!102;UBERON:0006601!4.82e-24!102;UBERON:0000033!2.73e-20!63;UBERON:0000955!5.29e-19!50;UBERON:0006238!5.29e-19!50;UBERON:0001049!1.80e-18!52;UBERON:0005068!1.80e-18!52;UBERON:0006241!1.80e-18!52;UBERON:0007135!1.80e-18!52;UBERON:0003056!2.37e-18!49;UBERON:0002616!2.58e-18!49;UBERON:0003080!5.37e-18!40;UBERON:0002346!9.20e-18!71;UBERON:0003075!9.20e-18!71;UBERON:0007284!9.20e-18!71;UBERON:0002780!1.06e-17!39;UBERON:0001890!1.06e-17!39;UBERON:0006240!1.06e-17!39;UBERON:0002020!1.98e-13!34;UBERON:0002791!3.82e-13!29;UBERON:0003528!3.82e-13!29;UBERON:0001893!3.82e-13!29;UBERON:0000956!7.10e-12!21;UBERON:0001869!7.10e-12!21;UBERON:0000203!7.10e-12!21;UBERON:0000153!6.18e-10!94;UBERON:0007811!1.04e-09!86;UBERON:0002619!3.73e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.09e-25,95;UBERON:0000924,1.09e-25,95;UBERON:0006601,1.09e-25,95;UBERON:0001016,1.75e-24,75;UBERON:0001017,3.01e-24,73;UBERON:0010371,4.69e-20,73;UBERON:0002346,1.07e-19,64;UBERON:0003075,1.07e-19,64;UBERON:0007284,1.07e-19,64;UBERON:0000955,2.33e-19,47;UBERON:0006238,2.33e-19,47;UBERON:0000073,7.49e-19,54;UBERON:0002616,1.16e-18,46;UBERON:0001049,1.70e-18,52;UBERON:0005068,1.70e-18,52;UBERON:0006241,1.70e-18,52;UBERON:0007135,1.70e-18,52;UBERON:0003056,2.25e-18,49;UBERON:0003080,5.10e-18,40;UBERON:0002780,1.01e-17,39;UBERON:0001890,1.01e-17,39;UBERON:0006240,1.01e-17,39;UBERON:0010314,6.52e-14,92;UBERON:0002020,1.91e-13,34;UBERON:0003528,3.68e-13,29;UBERON:0002791,3.68e-13,29;UBERON:0001893,3.68e-13,29;UBERON:0000956,6.87e-12,21;UBERON:0001869,6.87e-12,21;UBERON:0000203,6.87e-12,21;UBERON:0002619,3.64e-09,17|phase1_expression=12.1713123799643,17.7977457896074,21.3849642513082,0.60492842261366,2.00358291978539,12.7588246653036,11.6806320297763,1.03298658753261,0.84473233291,0.70219357896598,0.34243593645101,0.398860794976682,1.19840510951844,1.13646523144697,0,0,0,0,0,0,5.69790044012167,2.48227378002213,3.6567970479451,11.1994695955385,13.0763290208287,9.18771142584032,13.3536218809313,9.9116767035509,6.46079626151671,5.04060259519861,9.09095093686749,0,0,0,1.73310971850765,1.82858109894342,1.63335485009895,0,0.7813353445238,0,0,0,0,11.2048167998264,14.9024088892686,17.2533947031981,17.2126095756569,17.6600376668162,15.1583466086786,8.74934545834275,12.3188051030319,10.062679505548,0,0,0,16.9791227783725,24.6418758347331,12.8918023069361,23.2663929988537,20.1016572123373,17.1134478946668,18.9752937958714,9.78224275722253,4.94944844504769,3.9554654502679,4.2628806896766,12.583204641773,15.7529505181837,33.4917447756383,34.8315320895762,33.021018932167,10.2834354385369,8.39300455616131,29.275301012374,35.4628242767475,17.4651569455904,5.50579404996943,10.0872997087298,8.60196586234964,23.7395317914349,22.6889356133976,16.1483144872596,5.862842979029,3.37657566019008,6.87592114995646,7.36571463684169,7.54569908235246,15.6575534493252,6.28527404665428,14.2074533000757,4.34796733052517,0,0,0,0,0,1.68533304158102,11.5892619353079,15.3273742715693,12.3668851078619,10.140726223921,7.69958864485907,2.54805239706646,14.2213340630666,4.76280290224671,2.53359865475099,3.53867111510348,3.19714863213368,1.29468941823586,5.04703272820404,7.98032503124225,6.69824052286711,6.45723392316964,5.27529241934179,6.70255630673517,3.39299796590124,5.6854842578906,2.02439099687876,2.65383165584962,7.27950824763341,5.07935492458905,5.81850303762267,3.72783522436244,9.36898550436951,9.42510180660548,4.34276993854605,0,0,0,11.9832511523858,20.1300265240196,27.1413400563787,28.3333641913411,26.338692105024,11.6361304953354,11.8436122039463,12.220723662038,6.96679035416521,0.758168275301024,2.31486041475121,8.97831056442656,12.4147136394075,14.7650946440386,9.64510834148576,13.7433728285682,11.0177799444971,15.3670828277955,4.13925393182425,7.11374376678379,8.13156144721623,8.09375171154165,10.5213951565236,7.22922847986555,10.0993128291428,8.43706759272568,9.95171334092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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12297 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=G5E821 | |||
|association_with_transcript=0bp_to_ENSMUST00000003442,NM_007581,uc007xnc.1,uc011zza.1_5end | |||
|cluster_id=chr15:98465174..98465209,+ | |||
|description=CAGE_peak_1_at_Cacnb3_5end | |||
|id=chr15:98465174..98465209,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.71e-13!50;CL:0000221!1.43e-11!44;CL:0000133!1.43e-11!44;CL:0002319!2.14e-11!43;CL:0000393!4.91e-11!39;CL:0000211!4.91e-11!39;CL:0000540!1.58e-08!33;CL:0000047!1.58e-08!33;CL:0000031!1.58e-08!33;CL:0000404!1.58e-08!33;CL:0002321!5.60e-08!70;CL:0000220!5.60e-08!70;CL:0000117!5.31e-07!23;CL:0000337!5.31e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.39e-11,44;CL:0000133,1.39e-11,44;CL:0002319,2.08e-11,43;CL:0000393,4.77e-11,39;CL:0000211,4.77e-11,39;CL:0000540,1.54e-08,33;CL:0000047,1.54e-08,33;CL:0000031,1.54e-08,33;CL:0000404,1.54e-08,33;CL:0002321,5.03e-08,70;CL:0000117,5.22e-07,23;CL:0000337,5.22e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.89e-24!75;UBERON:0001016!1.89e-24!75;UBERON:0001017!3.24e-24!73;UBERON:0005743!3.24e-24!73;UBERON:0004121!4.82e-24!102;UBERON:0000924!4.82e-24!102;UBERON:0006601!4.82e-24!102;UBERON:0000033!2.73e-20!63;UBERON:0000955!5.29e-19!50;UBERON:0006238!5.29e-19!50;UBERON:0001049!1.80e-18!52;UBERON:0005068!1.80e-18!52;UBERON:0006241!1.80e-18!52;UBERON:0007135!1.80e-18!52;UBERON:0003056!2.37e-18!49;UBERON:0002616!2.58e-18!49;UBERON:0003080!5.37e-18!40;UBERON:0002346!9.20e-18!71;UBERON:0003075!9.20e-18!71;UBERON:0007284!9.20e-18!71;UBERON:0002780!1.06e-17!39;UBERON:0001890!1.06e-17!39;UBERON:0006240!1.06e-17!39;UBERON:0002020!1.98e-13!34;UBERON:0002791!3.82e-13!29;UBERON:0003528!3.82e-13!29;UBERON:0001893!3.82e-13!29;UBERON:0000956!7.10e-12!21;UBERON:0001869!7.10e-12!21;UBERON:0000203!7.10e-12!21;UBERON:0000153!6.18e-10!94;UBERON:0007811!1.04e-09!86;UBERON:0002619!3.73e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.09e-25,95;UBERON:0000924,1.09e-25,95;UBERON:0006601,1.09e-25,95;UBERON:0001016,1.75e-24,75;UBERON:0001017,3.01e-24,73;UBERON:0010371,4.69e-20,73;UBERON:0002346,1.07e-19,64;UBERON:0003075,1.07e-19,64;UBERON:0007284,1.07e-19,64;UBERON:0000955,2.33e-19,47;UBERON:0006238,2.33e-19,47;UBERON:0000073,7.49e-19,54;UBERON:0002616,1.16e-18,46;UBERON:0001049,1.70e-18,52;UBERON:0005068,1.70e-18,52;UBERON:0006241,1.70e-18,52;UBERON:0007135,1.70e-18,52;UBERON:0003056,2.25e-18,49;UBERON:0003080,5.10e-18,40;UBERON:0002780,1.01e-17,39;UBERON:0001890,1.01e-17,39;UBERON:0006240,1.01e-17,39;UBERON:0010314,6.52e-14,92;UBERON:0002020,1.91e-13,34;UBERON:0003528,3.68e-13,29;UBERON:0002791,3.68e-13,29;UBERON:0001893,3.68e-13,29;UBERON:0000956,6.87e-12,21;UBERON:0001869,6.87e-12,21;UBERON:0000203,6.87e-12,21;UBERON:0002619,3.64e-09,17 | |||
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| |||
|short_description=p1@Cacnb3 | |||
}} |
Latest revision as of 13:10, 1 October 2015
Short description: | p1@Cacnb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cacnb3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000003442, NM_007581, uc007xnc.1, uc011zza.1_5end |
EntrezGene: | Cacnb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.39e-11 | 44 |
neurectodermal cell | 1.39e-11 | 44 |
neural cell | 2.08e-11 | 43 |
electrically responsive cell | 4.77e-11 | 39 |
electrically active cell | 4.77e-11 | 39 |
neuron | 1.54e-08 | 33 |
neuronal stem cell | 1.54e-08 | 33 |
neuroblast | 1.54e-08 | 33 |
electrically signaling cell | 1.54e-08 | 33 |
embryonic cell | 5.03e-08 | 70 |
CNS neuron (sensu Vertebrata) | 5.22e-07 | 23 |
neuroblast (sensu Vertebrata) | 5.22e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.09e-25 | 95 |
ectoderm | 1.09e-25 | 95 |
presumptive ectoderm | 1.09e-25 | 95 |
nervous system | 1.75e-24 | 75 |
central nervous system | 3.01e-24 | 73 |
ecto-epithelium | 4.69e-20 | 73 |
neurectoderm | 1.07e-19 | 64 |
neural plate | 1.07e-19 | 64 |
presumptive neural plate | 1.07e-19 | 64 |
brain | 2.33e-19 | 47 |
future brain | 2.33e-19 | 47 |
regional part of nervous system | 7.49e-19 | 54 |
regional part of brain | 1.16e-18 | 46 |
neural tube | 1.70e-18 | 52 |
neural rod | 1.70e-18 | 52 |
future spinal cord | 1.70e-18 | 52 |
neural keel | 1.70e-18 | 52 |
pre-chordal neural plate | 2.25e-18 | 49 |
anterior neural tube | 5.10e-18 | 40 |
regional part of forebrain | 1.01e-17 | 39 |
forebrain | 1.01e-17 | 39 |
future forebrain | 1.01e-17 | 39 |
structure with developmental contribution from neural crest | 6.52e-14 | 92 |
gray matter | 1.91e-13 | 34 |
brain grey matter | 3.68e-13 | 29 |
regional part of telencephalon | 3.68e-13 | 29 |
telencephalon | 3.68e-13 | 29 |
cerebral cortex | 6.87e-12 | 21 |
cerebral hemisphere | 6.87e-12 | 21 |
pallium | 6.87e-12 | 21 |
regional part of cerebral cortex | 3.64e-09 | 17 |