FFCP PHASE1:Mm9::chr15:98462776..98462821,+: Difference between revisions
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{{FFCP|EntrezGene=12297|HGNC=|UniProt=D3Z3Z3|association_with_transcript=125bp_to_ENSMUST00000109150,NM_001044741,uc007xnb.1_5end|description=CAGE_peak_2_at_Cacnb3_5end|id=chr15:98462776..98462821,+|ontology_enrichment_celltype=CL:0000393!7.70e-13!39;CL:0000211!7.70e-13!39;CL:0000117!4.29e-11!23;CL:0000337!4.29e-11!23;CL:0000055!6.59e-10!50;CL:0000540!8.53e-10!33;CL:0000047!8.53e-10!33;CL:0000031!8.53e-10!33;CL:0000404!8.53e-10!33;CL:0000221!2.28e-08!44;CL:0000133!2.28e-08!44;CL:0002319!6.00e-08!43;CL:0002321!5.73e-07!70;CL:0000220!5.73e-07!70|ontology_enrichment_celltype_v019_2=CL:0000393,5.64e-13,39;CL:0000211,5.64e-13,39;CL:0000117,3.30e-11,23;CL:0000337,3.30e-11,23;CL:0000540,6.79e-10,33;CL:0000047,6.79e-10,33;CL:0000031,6.79e-10,33;CL:0000404,6.79e-10,33;CL:0000221,2.18e-08,44;CL:0000133,2.18e-08,44;CL:0002319,5.77e-08,43;CL:0002321,2.34e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.05e-15!73;UBERON:0005743!1.05e-15!73;UBERON:0000073!1.16e-14!75;UBERON:0001016!1.16e-14!75;UBERON:0003056!4.93e-14!49;UBERON:0002780!5.67e-14!39;UBERON:0001890!5.67e-14!39;UBERON:0006240!5.67e-14!39;UBERON:0003080!7.49e-14!40;UBERON:0001049!7.81e-14!52;UBERON:0005068!7.81e-14!52;UBERON:0006241!7.81e-14!52;UBERON:0007135!7.81e-14!52;UBERON:0002020!1.86e-13!34;UBERON:0004121!3.50e-13!102;UBERON:0000924!3.50e-13!102;UBERON:0006601!3.50e-13!102;UBERON:0002346!9.38e-13!71;UBERON:0003075!9.38e-13!71;UBERON:0007284!9.38e-13!71;UBERON:0000033!1.17e-12!63;UBERON:0000955!4.18e-12!50;UBERON:0006238!4.18e-12!50;UBERON:0002616!7.89e-12!49;UBERON:0002791!9.39e-11!29;UBERON:0003528!9.39e-11!29;UBERON:0001893!9.39e-11!29;UBERON:0000956!9.01e-08!21;UBERON:0001869!9.01e-08!21;UBERON:0000203!9.01e-08!21;UBERON:0000153!9.05e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.27e-15,73;UBERON:0001016,1.64e-14,75;UBERON:0000073,2.58e-14,54;UBERON:0002780,4.03e-14,39;UBERON:0001890,4.03e-14,39;UBERON:0006240,4.03e-14,39;UBERON:0003056,5.21e-14,49;UBERON:0002346,5.32e-14,64;UBERON:0003075,5.32e-14,64;UBERON:0007284,5.32e-14,64;UBERON:0003080,5.33e-14,40;UBERON:0010371,6.84e-14,73;UBERON:0001049,1.04e-13,52;UBERON:0005068,1.04e-13,52;UBERON:0006241,1.04e-13,52;UBERON:0007135,1.04e-13,52;UBERON:0004121,1.04e-13,95;UBERON:0000924,1.04e-13,95;UBERON:0006601,1.04e-13,95;UBERON:0002020,1.34e-13,34;UBERON:0000955,1.05e-11,47;UBERON:0006238,1.05e-11,47;UBERON:0002616,1.98e-11,46;UBERON:0003528,7.29e-11,29;UBERON:0002791,7.29e-11,29;UBERON:0001893,7.29e-11,29;UBERON:0010314,1.59e-09,92;UBERON:0000956,7.58e-08,21;UBERON:0001869,7.58e-08,21;UBERON:0000203,7.58e-08,21|phase1_expression=7.52699581392532,2.09385244583617,2.27499619694768,0,0,6.5472916045637,8.1764424208434,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0.137114433605739,0,3.91199134694921,0.198581902401771,0.261199789138935,3.35984087866154,1.83527424853736,1.72269589234506,4.73838195774982,6.03319451520489,5.32065574477847,4.78857246543868,6.20845429834853,0,0,0,2.59966457776147,4.65457007003779,2.6542016314108,0,0,0,0,0,0,11.2048167998264,11.5569701590247,20.9243297464317,6.25913075478431,3.92445281484804,4.39372365468944,1.94429899074283,2.2397827460058,2.87505128729943,0,0,0,13.3774906738692,10.3152038377952,10.8291139378263,26.5034563726073,32.797440714866,33.5930643858275,10.165335962074,7.11435836888911,0.899899717281399,1.97773272513395,2.1314403448383,5.99200221036809,6.53171119046643,13.0648911508682,15.1206650931494,13.6711224878398,11.9973413449598,13.0312439161452,15.923803897944,13.8975932976443,19.3035945188104,7.70811166995721,6.38436690425939,2.91852413186863,34.2904348098504,33.7589404892892,28.129322010065,2.79182999001381,6.19038871034848,6.57032465440283,10.9012576625257,11.5321061447273,20.1311401491325,0.37863096666592,1.81371744256285,1.73918693221007,0,0,0,0,0,1.68533304158102,29.3140154834259,21.3024523774352,20.8470348961101,10.9857867425811,8.98285341900225,10.1922095882658,0,3.46385665617943,5.57391704045217,7.07734223020697,1.48439043634778,5.17875767294343,0.593768556259299,5.20455980298408,4.56698217468212,4.38169444786511,3.46662073271032,3.41007250693544,0.879666139307728,0.988779870937496,1.44599356919912,0,4.36770494858005,3.75430581382669,2.42437626567611,16.775258509631,0.585561594023094,0.628340120440365,4.34276993854605,0,0,0,4.6435098215495,12.3525162761029,36.9423795211821,9.90798625095976,7.92717917724025,5.61027720310812,7.46309810111685,6.11036183101898,2.11491850037158,0,0.841767423545896,4.94457683258274,7.35686734187113,10.2635413989049,7.68594570962147,4.76255494059295,6.40568601424249,7.02762934197966,1.55222022443409,4.31135985865684,6.99692496620931,9.50136070485324,6.57587197282724,8.61946472599353,6.61679116392116,7.20237477427802,10.9468846750171,0,0,0,2.27838349789052,1.40715635988658,2.88099298337624,1.65721314909647,2.16440654922144,1.69693824176116,1.16266972375204,1.07309360559848,1.63471479314037,2.96207729844265,2.79084688934462,2.26992666728396,2.04679982395465,0.658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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12297 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=D3Z3Z3 | |||
|association_with_transcript=125bp_to_ENSMUST00000109150,NM_001044741,uc007xnb.1_5end | |||
|cluster_id=chr15:98462776..98462821,+ | |||
|description=CAGE_peak_2_at_Cacnb3_5end | |||
|id=chr15:98462776..98462821,+ | |||
|ontology_enrichment_celltype=CL:0000393!7.70e-13!39;CL:0000211!7.70e-13!39;CL:0000117!4.29e-11!23;CL:0000337!4.29e-11!23;CL:0000055!6.59e-10!50;CL:0000540!8.53e-10!33;CL:0000047!8.53e-10!33;CL:0000031!8.53e-10!33;CL:0000404!8.53e-10!33;CL:0000221!2.28e-08!44;CL:0000133!2.28e-08!44;CL:0002319!6.00e-08!43;CL:0002321!5.73e-07!70;CL:0000220!5.73e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,5.64e-13,39;CL:0000211,5.64e-13,39;CL:0000117,3.30e-11,23;CL:0000337,3.30e-11,23;CL:0000540,6.79e-10,33;CL:0000047,6.79e-10,33;CL:0000031,6.79e-10,33;CL:0000404,6.79e-10,33;CL:0000221,2.18e-08,44;CL:0000133,2.18e-08,44;CL:0002319,5.77e-08,43;CL:0002321,2.34e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.05e-15!73;UBERON:0005743!1.05e-15!73;UBERON:0000073!1.16e-14!75;UBERON:0001016!1.16e-14!75;UBERON:0003056!4.93e-14!49;UBERON:0002780!5.67e-14!39;UBERON:0001890!5.67e-14!39;UBERON:0006240!5.67e-14!39;UBERON:0003080!7.49e-14!40;UBERON:0001049!7.81e-14!52;UBERON:0005068!7.81e-14!52;UBERON:0006241!7.81e-14!52;UBERON:0007135!7.81e-14!52;UBERON:0002020!1.86e-13!34;UBERON:0004121!3.50e-13!102;UBERON:0000924!3.50e-13!102;UBERON:0006601!3.50e-13!102;UBERON:0002346!9.38e-13!71;UBERON:0003075!9.38e-13!71;UBERON:0007284!9.38e-13!71;UBERON:0000033!1.17e-12!63;UBERON:0000955!4.18e-12!50;UBERON:0006238!4.18e-12!50;UBERON:0002616!7.89e-12!49;UBERON:0002791!9.39e-11!29;UBERON:0003528!9.39e-11!29;UBERON:0001893!9.39e-11!29;UBERON:0000956!9.01e-08!21;UBERON:0001869!9.01e-08!21;UBERON:0000203!9.01e-08!21;UBERON:0000153!9.05e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.27e-15,73;UBERON:0001016,1.64e-14,75;UBERON:0000073,2.58e-14,54;UBERON:0002780,4.03e-14,39;UBERON:0001890,4.03e-14,39;UBERON:0006240,4.03e-14,39;UBERON:0003056,5.21e-14,49;UBERON:0002346,5.32e-14,64;UBERON:0003075,5.32e-14,64;UBERON:0007284,5.32e-14,64;UBERON:0003080,5.33e-14,40;UBERON:0010371,6.84e-14,73;UBERON:0001049,1.04e-13,52;UBERON:0005068,1.04e-13,52;UBERON:0006241,1.04e-13,52;UBERON:0007135,1.04e-13,52;UBERON:0004121,1.04e-13,95;UBERON:0000924,1.04e-13,95;UBERON:0006601,1.04e-13,95;UBERON:0002020,1.34e-13,34;UBERON:0000955,1.05e-11,47;UBERON:0006238,1.05e-11,47;UBERON:0002616,1.98e-11,46;UBERON:0003528,7.29e-11,29;UBERON:0002791,7.29e-11,29;UBERON:0001893,7.29e-11,29;UBERON:0010314,1.59e-09,92;UBERON:0000956,7.58e-08,21;UBERON:0001869,7.58e-08,21;UBERON:0000203,7.58e-08,21 | |||
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| |||
|short_description=p2@Cacnb3 | |||
}} |
Latest revision as of 13:09, 1 October 2015
Short description: | p2@Cacnb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cacnb3_5end |
Coexpression cluster: | NA |
Association with transcript: | 125bp_to_ENSMUST00000109150, NM_001044741, uc007xnb.1_5end |
EntrezGene: | Cacnb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 5.64e-13 | 39 |
electrically active cell | 5.64e-13 | 39 |
CNS neuron (sensu Vertebrata) | 3.30e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.30e-11 | 23 |
neuron | 6.79e-10 | 33 |
neuronal stem cell | 6.79e-10 | 33 |
neuroblast | 6.79e-10 | 33 |
electrically signaling cell | 6.79e-10 | 33 |
ectodermal cell | 2.18e-08 | 44 |
neurectodermal cell | 2.18e-08 | 44 |
neural cell | 5.77e-08 | 43 |
embryonic cell | 2.34e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.27e-15 | 73 |
nervous system | 1.64e-14 | 75 |
regional part of nervous system | 2.58e-14 | 54 |
regional part of forebrain | 4.03e-14 | 39 |
forebrain | 4.03e-14 | 39 |
future forebrain | 4.03e-14 | 39 |
pre-chordal neural plate | 5.21e-14 | 49 |
neurectoderm | 5.32e-14 | 64 |
neural plate | 5.32e-14 | 64 |
presumptive neural plate | 5.32e-14 | 64 |
anterior neural tube | 5.33e-14 | 40 |
ecto-epithelium | 6.84e-14 | 73 |
neural tube | 1.04e-13 | 52 |
neural rod | 1.04e-13 | 52 |
future spinal cord | 1.04e-13 | 52 |
neural keel | 1.04e-13 | 52 |
ectoderm-derived structure | 1.04e-13 | 95 |
ectoderm | 1.04e-13 | 95 |
presumptive ectoderm | 1.04e-13 | 95 |
gray matter | 1.34e-13 | 34 |
brain | 1.05e-11 | 47 |
future brain | 1.05e-11 | 47 |
regional part of brain | 1.98e-11 | 46 |
brain grey matter | 7.29e-11 | 29 |
regional part of telencephalon | 7.29e-11 | 29 |
telencephalon | 7.29e-11 | 29 |
structure with developmental contribution from neural crest | 1.59e-09 | 92 |
cerebral cortex | 7.58e-08 | 21 |
cerebral hemisphere | 7.58e-08 | 21 |
pallium | 7.58e-08 | 21 |