FFCP PHASE1:Mm9::chr15:79272502..79272536,-: Difference between revisions
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{{FFCP|EntrezGene=27373|HGNC=|MCL_coexpression_id=22|UniProt=A8Y308,Q9JMK2,A2ABP1|association_with_transcript=-15bp_to_NM_013767,uc007wtl.2,uc011zwb.1_5end|description=CAGE_peak_1_at_Csnk1e_5end|id=chr15:79272502..79272536,-|ontology_enrichment_celltype=CL:0002319!1.52e-20!43;CL:0000221!3.53e-20!44;CL:0000133!3.53e-20!44;CL:0000055!2.94e-17!50;CL:0000540!4.74e-17!33;CL:0000047!4.74e-17!33;CL:0000031!4.74e-17!33;CL:0000404!4.74e-17!33;CL:0000117!1.81e-14!23;CL:0000337!1.81e-14!23;CL:0000393!3.49e-14!39;CL:0000211!3.49e-14!39;CL:0002321!3.03e-11!70;CL:0000220!3.03e-11!70|ontology_enrichment_celltype_v019_2=CL:0002319,1.51e-20,43;CL:0000221,3.52e-20,44;CL:0000133,3.52e-20,44;CL:0000540,4.72e-17,33;CL:0000047,4.72e-17,33;CL:0000031,4.72e-17,33;CL:0000404,4.72e-17,33;CL:0000117,1.81e-14,23;CL:0000337,1.81e-14,23;CL:0000393,3.48e-14,39;CL:0000211,3.48e-14,39;CL:0002321,2.93e-11,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.07e-22!75;UBERON:0001016!1.07e-22!75;UBERON:0001017!9.62e-22!73;UBERON:0005743!9.62e-22!73;UBERON:0004121!2.32e-21!102;UBERON:0000924!2.32e-21!102;UBERON:0006601!2.32e-21!102;UBERON:0002346!2.10e-15!71;UBERON:0003075!2.10e-15!71;UBERON:0007284!2.10e-15!71;UBERON:0001049!5.13e-13!52;UBERON:0005068!5.13e-13!52;UBERON:0006241!5.13e-13!52;UBERON:0007135!5.13e-13!52;UBERON:0000033!2.46e-12!63;UBERON:0000955!1.02e-11!50;UBERON:0006238!1.02e-11!50;UBERON:0002020!2.04e-11!34;UBERON:0002616!2.36e-11!49;UBERON:0003056!2.77e-10!49;UBERON:0000153!2.70e-09!94;UBERON:0002780!2.81e-09!39;UBERON:0001890!2.81e-09!39;UBERON:0006240!2.81e-09!39;UBERON:0007811!2.93e-09!86;UBERON:0003080!2.99e-09!40;UBERON:0002791!1.09e-08!29;UBERON:0003528!1.09e-08!29;UBERON:0001893!1.09e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.07e-22,75;UBERON:0001017,9.58e-22,73;UBERON:0004121,5.25e-21,95;UBERON:0000924,5.25e-21,95;UBERON:0006601,5.25e-21,95;UBERON:0002346,2.69e-15,64;UBERON:0003075,2.69e-15,64;UBERON:0007284,2.69e-15,64;UBERON:0010314,1.88e-14,92;UBERON:0000073,4.51e-14,54;UBERON:0001049,5.12e-13,52;UBERON:0005068,5.12e-13,52;UBERON:0006241,5.12e-13,52;UBERON:0007135,5.12e-13,52;UBERON:0010371,1.14e-12,73;UBERON:0002020,2.03e-11,34;UBERON:0000955,2.53e-10,47;UBERON:0006238,2.53e-10,47;UBERON:0003056,2.76e-10,49;UBERON:0002616,5.71e-10,46;UBERON:0002780,2.81e-09,39;UBERON:0001890,2.81e-09,39;UBERON:0006240,2.81e-09,39;UBERON:0003080,2.98e-09,40;UBERON:0003528,1.09e-08,29;UBERON:0002791,1.09e-08,29;UBERON:0001893,1.09e-08,29|phase1_expression=5.92550734287738,1.74487703819681,3.63999391511629,1.81478526784098,2.50447864973174,4.70061961353291,3.50418960893289,0.774739940649458,3.23814060948833,2.10658073689794,0.68487187290202,0.8774937489487,2.22560948910567,1.48614684112296,1.33243904726265,1.21485160433896,2.09868563438444,1.26184866143295,1.37114433605739,1.69755860719212,6.4632900514813,3.77305614563364,2.87319768052829,0.639969691173627,1.37645568640302,3.44539178469012,2.15380998079537,1.939241094173,0.760093677825496,1.26015064879965,1.10865255327652,1.90509202037889,1.84519436275371,0,2.02196133825892,1.49611180822643,3.06254034393554,10.8818223991596,10.1573594788094,12.0410461113974,15.8822501768374,18.442228093878,9.71020706062307,3.02152363141385,5.47435428585379,8.25960384727567,10.9534788208725,10.6832326626419,7.68901639570651,9.52706505463989,6.7193482380174,12.9377307928474,2.51673909086605,3.62681071005672,1.34437519656986,7.46052364504246,2.57880095944881,3.6097046459421,33.3822160418336,24.3335850465135,25.3532561402472,7.45457970552091,3.55717918444456,6.74924787961049,7.9109309005358,7.104801149461,11.085204089181,17.28982373947,45.7271190280386,37.53165085621,38.0688180046001,16.8534080798244,15.2399293256613,30.2552274060936,53.8651547122488,29.4150011715207,12.1127469099328,14.0456071893706,10.9060638611933,35.4774113994221,46.3842353064217,30.2129754922921,12.5632349550621,7.31591393041184,10.5430790965999,14.142172102736,15.5185132071022,28.519115211271,10.7531194533121,10.6555899750568,7.24661221754194,4.30211938490693,10.879541339324,1.07940638327563,0.649776417447669,0.448026887097336,1.68533304158102,5.11290967734173,2.85764605063156,3.5333957451034,6.05626705039726,8.98285341900225,7.64415719119937,21.3320010945999,8.44315059943735,7.60079596425296,10.1104889002957,2.16949371466214,1.8125651855302,9.50029690014878,7.45986905094384,3.34912026143355,5.99600292865752,6.93324146542064,7.64326596382081,9.29932775839599,7.41584903203122,2.16899035379867,3.5384422077995,7.117741397686,6.8460870722722,1.45462575940567,0,4.9772735491963,7.95897485891129,1.02182822083437,6.82946209683746,9.59844369589452,6.22644112658017,7.04016005202667,5.03250663100489,30.5340075634261,7.30062144807561,5.8814555185976,8.51930982694196,6.81413304884582,7.43427356107309,3.6078021476927,2.27450482590307,1.68353484709179,8.06746746368763,12.8745178482745,11.7040384373477,8.13806016312861,10.0013653752452,9.86475646193343,10.6819965998091,3.3631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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=27373 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=A8Y308,Q9JMK2,A2ABP1 | |||
|association_with_transcript=-15bp_to_NM_013767,uc007wtl.2,uc011zwb.1_5end | |||
|cluster_id=chr15:79272502..79272536,- | |||
|description=CAGE_peak_1_at_Csnk1e_5end | |||
|id=chr15:79272502..79272536,- | |||
|ontology_enrichment_celltype=CL:0002319!1.52e-20!43;CL:0000221!3.53e-20!44;CL:0000133!3.53e-20!44;CL:0000055!2.94e-17!50;CL:0000540!4.74e-17!33;CL:0000047!4.74e-17!33;CL:0000031!4.74e-17!33;CL:0000404!4.74e-17!33;CL:0000117!1.81e-14!23;CL:0000337!1.81e-14!23;CL:0000393!3.49e-14!39;CL:0000211!3.49e-14!39;CL:0002321!3.03e-11!70;CL:0000220!3.03e-11!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.51e-20,43;CL:0000221,3.52e-20,44;CL:0000133,3.52e-20,44;CL:0000540,4.72e-17,33;CL:0000047,4.72e-17,33;CL:0000031,4.72e-17,33;CL:0000404,4.72e-17,33;CL:0000117,1.81e-14,23;CL:0000337,1.81e-14,23;CL:0000393,3.48e-14,39;CL:0000211,3.48e-14,39;CL:0002321,2.93e-11,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.07e-22!75;UBERON:0001016!1.07e-22!75;UBERON:0001017!9.62e-22!73;UBERON:0005743!9.62e-22!73;UBERON:0004121!2.32e-21!102;UBERON:0000924!2.32e-21!102;UBERON:0006601!2.32e-21!102;UBERON:0002346!2.10e-15!71;UBERON:0003075!2.10e-15!71;UBERON:0007284!2.10e-15!71;UBERON:0001049!5.13e-13!52;UBERON:0005068!5.13e-13!52;UBERON:0006241!5.13e-13!52;UBERON:0007135!5.13e-13!52;UBERON:0000033!2.46e-12!63;UBERON:0000955!1.02e-11!50;UBERON:0006238!1.02e-11!50;UBERON:0002020!2.04e-11!34;UBERON:0002616!2.36e-11!49;UBERON:0003056!2.77e-10!49;UBERON:0000153!2.70e-09!94;UBERON:0002780!2.81e-09!39;UBERON:0001890!2.81e-09!39;UBERON:0006240!2.81e-09!39;UBERON:0007811!2.93e-09!86;UBERON:0003080!2.99e-09!40;UBERON:0002791!1.09e-08!29;UBERON:0003528!1.09e-08!29;UBERON:0001893!1.09e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.07e-22,75;UBERON:0001017,9.58e-22,73;UBERON:0004121,5.25e-21,95;UBERON:0000924,5.25e-21,95;UBERON:0006601,5.25e-21,95;UBERON:0002346,2.69e-15,64;UBERON:0003075,2.69e-15,64;UBERON:0007284,2.69e-15,64;UBERON:0010314,1.88e-14,92;UBERON:0000073,4.51e-14,54;UBERON:0001049,5.12e-13,52;UBERON:0005068,5.12e-13,52;UBERON:0006241,5.12e-13,52;UBERON:0007135,5.12e-13,52;UBERON:0010371,1.14e-12,73;UBERON:0002020,2.03e-11,34;UBERON:0000955,2.53e-10,47;UBERON:0006238,2.53e-10,47;UBERON:0003056,2.76e-10,49;UBERON:0002616,5.71e-10,46;UBERON:0002780,2.81e-09,39;UBERON:0001890,2.81e-09,39;UBERON:0006240,2.81e-09,39;UBERON:0003080,2.98e-09,40;UBERON:0003528,1.09e-08,29;UBERON:0002791,1.09e-08,29;UBERON:0001893,1.09e-08,29 | |||
|phase1_expression=5.92550734287738,1.74487703819681,3.63999391511629,1.81478526784098,2.50447864973174,4.70061961353291,3.50418960893289,0.774739940649458,3.23814060948833,2.10658073689794,0.68487187290202,0.8774937489487,2.22560948910567,1.48614684112296,1.33243904726265,1.21485160433896,2.09868563438444,1.26184866143295,1.37114433605739,1.69755860719212,6.4632900514813,3.77305614563364,2.87319768052829,0.639969691173627,1.37645568640302,3.44539178469012,2.15380998079537,1.939241094173,0.760093677825496,1.26015064879965,1.10865255327652,1.90509202037889,1.84519436275371,0,2.02196133825892,1.49611180822643,3.06254034393554,10.8818223991596,10.1573594788094,12.0410461113974,15.8822501768374,18.442228093878,9.71020706062307,3.02152363141385,5.47435428585379,8.25960384727567,10.9534788208725,10.6832326626419,7.68901639570651,9.52706505463989,6.7193482380174,12.9377307928474,2.51673909086605,3.62681071005672,1.34437519656986,7.46052364504246,2.57880095944881,3.6097046459421,33.3822160418336,24.3335850465135,25.3532561402472,7.45457970552091,3.55717918444456,6.74924787961049,7.9109309005358,7.104801149461,11.085204089181,17.28982373947,45.7271190280386,37.53165085621,38.0688180046001,16.8534080798244,15.2399293256613,30.2552274060936,53.8651547122488,29.4150011715207,12.1127469099328,14.0456071893706,10.9060638611933,35.4774113994221,46.3842353064217,30.2129754922921,12.5632349550621,7.31591393041184,10.5430790965999,14.142172102736,15.5185132071022,28.519115211271,10.7531194533121,10.6555899750568,7.24661221754194,4.30211938490693,10.879541339324,1.07940638327563,0.649776417447669,0.448026887097336,1.68533304158102,5.11290967734173,2.85764605063156,3.5333957451034,6.05626705039726,8.98285341900225,7.64415719119937,21.3320010945999,8.44315059943735,7.60079596425296,10.1104889002957,2.16949371466214,1.8125651855302,9.50029690014878,7.45986905094384,3.34912026143355,5.99600292865752,6.93324146542064,7.64326596382081,9.29932775839599,7.41584903203122,2.16899035379867,3.5384422077995,7.117741397686,6.8460870722722,1.45462575940567,0,4.9772735491963,7.95897485891129,1.02182822083437,6.82946209683746,9.59844369589452,6.22644112658017,7.04016005202667,5.03250663100489,30.5340075634261,7.30062144807561,5.8814555185976,8.51930982694196,6.81413304884582,7.43427356107309,3.6078021476927,2.27450482590307,1.68353484709179,8.06746746368763,12.8745178482745,11.7040384373477,8.13806016312861,10.0013653752452,9.86475646193343,10.6819965998091,3.3631438196072,10.993967639575,11.535470890237,8.2697028357056,7.67185063496512,5.00485048606076,5.2237824978325,3.49829631893504,3.78165106955137,4.91549231119264,4.37491442095016,4.54661599032948,8.69928244649108,3.51789089971644,6.30217215113552,8.75955521665278,6.49321964766433,6.47921874126989,7.20855228726264,10.7309360559848,11.4430035519826,8.06343264576054,3.61168420974009,6.89084881139774,5.55559952216263,4.83010253640311,6.1734952629771,5.67782861123144,25.4174392576833,1.32167513193519,2.64450566663544,7.03851226766272,6.73486348395272,5.02583099156164,3.83198696784351,2.00140239460383,2.66315876557583,1.42358718463353,3.12928013975621,2.26201687920243,3.38226002469956,1.75467678407208,0,2.59365659849633,3.38540164532424,7.58671603812327,6.16941968092536,5.63538678365402,5.29493452397817,3.29719228184964,6.59276706968994,5.6280518040589,2.50937251565324,2.98297582898612,2.59134044235781,1.48226313543574,2.16898637430922,2.55526693647164,1.57403478669398,1.01430060694251,1.20588579876208,0.763877555344259,1.72617682470486,1.78348749452539,0.823684239564244,1.43768206527355,1.86070473834252,0.624075346229121,2.27320990152401,1.79397413521912,0.482443521363367,8.31389355749721,8.7166049414423,9.4519686336375,3.73439188705414,6.57132695207806,8.71032538697442,6.18913466303636,18.3425628986331,3.94087860265477,11.2946991720875,11.6401981119966,8.68475567993411,10.5337838938196,8.67894351489069,3.01582567878545,2.71952841909355,1.96705709207614,5.24279817978992,7.06422595946285,7.73597131508541,4.42624352517024,10.856249869788,9.4652465824877,10.1514073517126,11.4174400798383,9.79772071605463,7.35235624471901,13.0215204162863,8.90583543684768,11.1057226006299,13.0444966722353,10.2822821254978,3.97432238583152,7.12262414669021,8.1443479676788,7.09371528781903,2.65490276679926,2.91336763385978,5.13950046840077,2.26326095707078,2.95301892880773,5.53383266299069,4.9101375701962,4.72593848320757,2.13898427030833,2.52829406348653,2.10837217149998,2.06271086496374,2.7235168460303,9.00305470156551,8.5376731296618,10.7168517515796,9.75371285032505,7.31312152168489,8.88564711251453,5.48036908406279,3.28540391289194,6.56679419677843,0.220528398054962,4.28704257647848,5.32832608096488,5.66941494324665,5.72987251215055,2.62625439592098,1.7488850197791,10.7546675166096,1.19609616558497,5.15967169908056,3.70389054739423,1.13021074202815,1.36694227721025,1.60144721244566,9.85874893964361,6.43776680688827,8.43019840206985,0.954670618015114,9.64824780422463,9.14937602070819,4.32021363287205,3.3454127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| |||
|short_description=p1@Csnk1e | |||
}} |
Latest revision as of 03:00, 27 September 2015
Short description: | p1@Csnk1e |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Csnk1e_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -15bp_to_NM_013767, uc007wtl.2, uc011zwb.1_5end |
EntrezGene: | Csnk1e |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.51e-20 | 43 |
ectodermal cell | 3.52e-20 | 44 |
neurectodermal cell | 3.52e-20 | 44 |
neuron | 4.72e-17 | 33 |
neuronal stem cell | 4.72e-17 | 33 |
neuroblast | 4.72e-17 | 33 |
electrically signaling cell | 4.72e-17 | 33 |
CNS neuron (sensu Vertebrata) | 1.81e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.81e-14 | 23 |
electrically responsive cell | 3.48e-14 | 39 |
electrically active cell | 3.48e-14 | 39 |
embryonic cell | 2.93e-11 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.07e-22 | 75 |
central nervous system | 9.58e-22 | 73 |
ectoderm-derived structure | 5.25e-21 | 95 |
ectoderm | 5.25e-21 | 95 |
presumptive ectoderm | 5.25e-21 | 95 |
neurectoderm | 2.69e-15 | 64 |
neural plate | 2.69e-15 | 64 |
presumptive neural plate | 2.69e-15 | 64 |
structure with developmental contribution from neural crest | 1.88e-14 | 92 |
regional part of nervous system | 4.51e-14 | 54 |
neural tube | 5.12e-13 | 52 |
neural rod | 5.12e-13 | 52 |
future spinal cord | 5.12e-13 | 52 |
neural keel | 5.12e-13 | 52 |
ecto-epithelium | 1.14e-12 | 73 |
gray matter | 2.03e-11 | 34 |
brain | 2.53e-10 | 47 |
future brain | 2.53e-10 | 47 |
pre-chordal neural plate | 2.76e-10 | 49 |
regional part of brain | 5.71e-10 | 46 |
regional part of forebrain | 2.81e-09 | 39 |
forebrain | 2.81e-09 | 39 |
future forebrain | 2.81e-09 | 39 |
anterior neural tube | 2.98e-09 | 40 |
brain grey matter | 1.09e-08 | 29 |
regional part of telencephalon | 1.09e-08 | 29 |
telencephalon | 1.09e-08 | 29 |