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FFCP PHASE1:Mm9::chr15:58720528..58720565,+: Difference between revisions

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{{FFCP|EntrezGene=75841|HGNC=|MCL_coexpression_id=0|UniProt=Q7TMV1|association_with_transcript=-218bp_to_ENSMUST00000036904,NM_175226,uc007vtq.2_5end|description=CAGE_peak_4_at_Rnf139_5end|id=chr15:58720528..58720565,+|ontology_enrichment_celltype=CL:0000117!7.59e-10!23;CL:0000337!7.59e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,7.47e-10,23;CL:0000337,7.47e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.51e-11!34;UBERON:0000033!2.58e-11!63;UBERON:0007811!2.76e-11!86;UBERON:0001049!3.98e-11!52;UBERON:0005068!3.98e-11!52;UBERON:0006241!3.98e-11!52;UBERON:0007135!3.98e-11!52;UBERON:0000153!1.05e-10!94;UBERON:0003056!2.56e-10!49;UBERON:0001017!2.68e-10!73;UBERON:0005743!2.68e-10!73;UBERON:0000073!3.81e-10!75;UBERON:0001016!3.81e-10!75;UBERON:0002616!9.11e-10!49;UBERON:0000955!1.33e-09!50;UBERON:0006238!1.33e-09!50;UBERON:0002791!2.04e-09!29;UBERON:0003528!2.04e-09!29;UBERON:0001893!2.04e-09!29;UBERON:0002346!3.55e-09!71;UBERON:0003075!3.55e-09!71;UBERON:0007284!3.55e-09!71;UBERON:0003080!6.88e-09!40;UBERON:0002780!1.12e-08!39;UBERON:0001890!1.12e-08!39;UBERON:0006240!1.12e-08!39;UBERON:0004121!3.03e-07!102;UBERON:0000924!3.03e-07!102;UBERON:0006601!3.03e-07!102|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.23e-12,54;UBERON:0002020,1.48e-11,34;UBERON:0002346,2.39e-11,64;UBERON:0003075,2.39e-11,64;UBERON:0007284,2.39e-11,64;UBERON:0001049,3.90e-11,52;UBERON:0005068,3.90e-11,52;UBERON:0006241,3.90e-11,52;UBERON:0007135,3.90e-11,52;UBERON:0003056,2.52e-10,49;UBERON:0001017,2.85e-10,73;UBERON:0001016,4.06e-10,75;UBERON:0003528,2.01e-09,29;UBERON:0002791,2.01e-09,29;UBERON:0001893,2.01e-09,29;UBERON:0010371,5.33e-09,73;UBERON:0003080,6.78e-09,40;UBERON:0002616,9.56e-09,46;UBERON:0002780,1.11e-08,39;UBERON:0001890,1.11e-08,39;UBERON:0006240,1.11e-08,39;UBERON:0004121,1.15e-08,95;UBERON:0000924,1.15e-08,95;UBERON:0006601,1.15e-08,95;UBERON:0000955,1.36e-08,47;UBERON:0006238,1.36e-08,47;UBERON:0010314,2.20e-08,92|phase1_expression=6.72625157840135,0.697950815278722,1.36499771816861,0.60492842261366,2.00358291978539,1.00727563147134,0.934450562382103,3.35720640948098,1.54867594366833,1.17032263160997,1.71217968225505,1.51567102091139,4.10881751834894,3.05971408466491,4.99664642723494,3.23960427823721,11.1929900500503,7.72882305127682,5.62169177783529,4.2438965179803,109.620801004729,3.3758923408301,2.35079810225042,0.319984845586813,1.60586496747019,2.29692785646008,0.86152399231815,1.07735616342945,1.14014051673824,0.756090389279792,1.77384408524244,5.71527606113668,4.30545351309199,0,1.73310971850765,1.82858109894342,1.63335485009895,3.34825304589526,4.6880120671428,8.37637990358077,4.1176204162171,4.09827290975067,3.39857247121808,2.64383317748712,2.33166941804883,2.38610777810186,1.56478268869608,3.92445281484804,1.75748946187577,2.3331587888914,1.95980990275508,2.87505128729943,6.37573903019398,3.62681071005672,4.7053131879945,1.80081605225163,2.57880095944881,2.57836046138721,3.84401275633236,9.52183762689659,6.97214543856797,0.677689064138264,1.77858959222228,4.04954872776629,0,1.4209602298922,1.79760066311043,2.30530983192933,3.83651565541367,4.45519596494579,3.99617426567626,5.42736870367227,4.8591079009355,5.51208596467293,2.68367318851062,4.5960939330501,6.60695285996332,4.97980618532232,3.84016333140609,5.67111037239834,5.39777097254217,5.73004707612436,8.09630697104005,7.31591393041184,4.5839474333043,4.71405736757868,4.9830088279686,6.52398060388552,2.27178579999552,3.09843396437821,3.76823835312181,1.72084775396277,2.719885334831,0.539703191637817,0.649776417447669,0.896053774194671,17.8364413567325,2.38602451609281,4.41636207824877,5.3000936176551,5.21120653173718,2.56652954828636,2.54805239706646,7.11066703153331,1.73192832808971,1.26679932737549,1.01104889002957,17.8126852361734,2.58937883647172,1.92974780784272,2.60227990149204,1.52232739156071,1.61430848079241,1.95939432718409,2.82212897125692,1.25666591329675,1.97755974187499,0.578397427679647,6.19227386364912,3.558870698843,2.20841518460394,3.87900202508178,1.86391761218122,2.04946557908083,2.51336048176146,0.510914110417183,8.2672435909085,4.79922184794726,5.59108999121485,4.04434726393021,3.66000482254901,4.27224797183739,4.34560800480691,5.11430914660661,4.36354893575076,3.73154905055843,4.68461073711455,3.35898820647251,7.07623723614289,1.68353484709179,4.16385417480652,5.51765050640335,5.22180176435513,2.26057226753573,6.25935792192216,3.97152532883034,4.02917415606834,4.13925393182425,2.80238390812695,3.78212160335639,2.99116911078713,3.5071317188412,2.50242524303038,1.39300866608867,1.85203922767149,1.99034266818493,4.21327912387941,4.37491442095016,5.11494298912067,2.69263504296152,2.57978665979206,1.2604344302271,3.07768156260773,3.14822770795846,2.1597395804233,1.16266972375204,2.68273401399619,4.2035523252181,3.29119699826961,1.80584210487005,1.70244500046297,3.65499968563331,2.63460138349261,3.08674763148855,5.25724871410318,4.6307075570678,0,1.05780226665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{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=75841
|HGNC=
|MCL_coexpression_id=0
|TSSclassifier=NA
|UniProt=Q7TMV1
|association_with_transcript=-218bp_to_ENSMUST00000036904,NM_175226,uc007vtq.2_5end
|cluster_id=chr15:58720528..58720565,+
|description=CAGE_peak_4_at_Rnf139_5end
|id=chr15:58720528..58720565,+
|ontology_enrichment_celltype=CL:0000117!7.59e-10!23;CL:0000337!7.59e-10!23
|ontology_enrichment_celltype_v019_2=CL:0000117,7.47e-10,23;CL:0000337,7.47e-10,23
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002020!1.51e-11!34;UBERON:0000033!2.58e-11!63;UBERON:0007811!2.76e-11!86;UBERON:0001049!3.98e-11!52;UBERON:0005068!3.98e-11!52;UBERON:0006241!3.98e-11!52;UBERON:0007135!3.98e-11!52;UBERON:0000153!1.05e-10!94;UBERON:0003056!2.56e-10!49;UBERON:0001017!2.68e-10!73;UBERON:0005743!2.68e-10!73;UBERON:0000073!3.81e-10!75;UBERON:0001016!3.81e-10!75;UBERON:0002616!9.11e-10!49;UBERON:0000955!1.33e-09!50;UBERON:0006238!1.33e-09!50;UBERON:0002791!2.04e-09!29;UBERON:0003528!2.04e-09!29;UBERON:0001893!2.04e-09!29;UBERON:0002346!3.55e-09!71;UBERON:0003075!3.55e-09!71;UBERON:0007284!3.55e-09!71;UBERON:0003080!6.88e-09!40;UBERON:0002780!1.12e-08!39;UBERON:0001890!1.12e-08!39;UBERON:0006240!1.12e-08!39;UBERON:0004121!3.03e-07!102;UBERON:0000924!3.03e-07!102;UBERON:0006601!3.03e-07!102
|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.23e-12,54;UBERON:0002020,1.48e-11,34;UBERON:0002346,2.39e-11,64;UBERON:0003075,2.39e-11,64;UBERON:0007284,2.39e-11,64;UBERON:0001049,3.90e-11,52;UBERON:0005068,3.90e-11,52;UBERON:0006241,3.90e-11,52;UBERON:0007135,3.90e-11,52;UBERON:0003056,2.52e-10,49;UBERON:0001017,2.85e-10,73;UBERON:0001016,4.06e-10,75;UBERON:0003528,2.01e-09,29;UBERON:0002791,2.01e-09,29;UBERON:0001893,2.01e-09,29;UBERON:0010371,5.33e-09,73;UBERON:0003080,6.78e-09,40;UBERON:0002616,9.56e-09,46;UBERON:0002780,1.11e-08,39;UBERON:0001890,1.11e-08,39;UBERON:0006240,1.11e-08,39;UBERON:0004121,1.15e-08,95;UBERON:0000924,1.15e-08,95;UBERON:0006601,1.15e-08,95;UBERON:0000955,1.36e-08,47;UBERON:0006238,1.36e-08,47;UBERON:0010314,2.20e-08,92
|phase1_expression=6.72625157840135,0.697950815278722,1.36499771816861,0.60492842261366,2.00358291978539,1.00727563147134,0.934450562382103,3.35720640948098,1.54867594366833,1.17032263160997,1.71217968225505,1.51567102091139,4.10881751834894,3.05971408466491,4.99664642723494,3.23960427823721,11.1929900500503,7.72882305127682,5.62169177783529,4.2438965179803,109.620801004729,3.3758923408301,2.35079810225042,0.319984845586813,1.60586496747019,2.29692785646008,0.86152399231815,1.07735616342945,1.14014051673824,0.756090389279792,1.77384408524244,5.71527606113668,4.30545351309199,0,1.73310971850765,1.82858109894342,1.63335485009895,3.34825304589526,4.6880120671428,8.37637990358077,4.1176204162171,4.09827290975067,3.39857247121808,2.64383317748712,2.33166941804883,2.38610777810186,1.56478268869608,3.92445281484804,1.75748946187577,2.3331587888914,1.95980990275508,2.87505128729943,6.37573903019398,3.62681071005672,4.7053131879945,1.80081605225163,2.57880095944881,2.57836046138721,3.84401275633236,9.52183762689659,6.97214543856797,0.677689064138264,1.77858959222228,4.04954872776629,0,1.4209602298922,1.79760066311043,2.30530983192933,3.83651565541367,4.45519596494579,3.99617426567626,5.42736870367227,4.8591079009355,5.51208596467293,2.68367318851062,4.5960939330501,6.60695285996332,4.97980618532232,3.84016333140609,5.67111037239834,5.39777097254217,5.73004707612436,8.09630697104005,7.31591393041184,4.5839474333043,4.71405736757868,4.9830088279686,6.52398060388552,2.27178579999552,3.09843396437821,3.76823835312181,1.72084775396277,2.719885334831,0.539703191637817,0.649776417447669,0.896053774194671,17.8364413567325,2.38602451609281,4.41636207824877,5.3000936176551,5.21120653173718,2.56652954828636,2.54805239706646,7.11066703153331,1.73192832808971,1.26679932737549,1.01104889002957,17.8126852361734,2.58937883647172,1.92974780784272,2.60227990149204,1.52232739156071,1.61430848079241,1.95939432718409,2.82212897125692,1.25666591329675,1.97755974187499,0.578397427679647,6.19227386364912,3.558870698843,2.20841518460394,3.87900202508178,1.86391761218122,2.04946557908083,2.51336048176146,0.510914110417183,8.2672435909085,4.79922184794726,5.59108999121485,4.04434726393021,3.66000482254901,4.27224797183739,4.34560800480691,5.11430914660661,4.36354893575076,3.73154905055843,4.68461073711455,3.35898820647251,7.07623723614289,1.68353484709179,4.16385417480652,5.51765050640335,5.22180176435513,2.26057226753573,6.25935792192216,3.97152532883034,4.02917415606834,4.13925393182425,2.80238390812695,3.78212160335639,2.99116911078713,3.5071317188412,2.50242524303038,1.39300866608867,1.85203922767149,1.99034266818493,4.21327912387941,4.37491442095016,5.11494298912067,2.69263504296152,2.57978665979206,1.2604344302271,3.07768156260773,3.14822770795846,2.1597395804233,1.16266972375204,2.68273401399619,4.2035523252181,3.29119699826961,1.80584210487005,1.70244500046297,3.65499968563331,2.63460138349261,3.08674763148855,5.25724871410318,4.6307075570678,0,1.05780226665418,1.91959425481711,1.62565670302307,1.03093969057675,2.01683524623343,1.11189021922435,2.28270751335071,0.474529061544512,1.15289268306808,2.01068167040216,2.38747766449381,1.55971269695296,0.898819408654221,1.08069024937347,0.796565093017469,2.46568271239006,2.51346727741403,1.1270773567308,2.44381593414377,2.52138233317913,3.08597607517402,2.84564417059158,1.47610147979602,0.941992367048249,1.1105744752962,1.48226313543574,3.50374722003798,3.34150291692445,2.47348323623339,2.63718157805054,2.17059443777175,4.07401362850272,1.43848068725405,3.72911021582581,0.549122826376163,4.31304619582064,1.86070473834252,0.936113019343682,1.76805214562978,0.179397413521912,1.92977408545347,2.03228509183265,2.4633883530163,3.7481944581666,1.52770577197669,1.64283173801951,2.68010011906905,2.61848004974615,2.73187107000918,1.89162172927429,2.21464689648775,1.91345722388985,2.62181303545181,1.38147985492716,2.89298117163023,4.52373851817817,0.54390568381871,2.45882136509518,1.10374698521893,5.77982123956051,4.21962071731931,3.11476396215683,5.04941854408746,2.52406575533005,1.95219372148319,0.861693590931196,2.86762557543062,2.22798674082394,3.39691836946599,1.61924280669958,1.75353514746787,2.37172666767914,2.57057053137446,1.56134093729095,3.38324646967785,3.4206261464251,1.64970122972535,0,1.45668381692989,0.906970670894253,0.943025398779491,1.47650946440386,1.53717573971964,1.29214146584111,2.18120237686503,1.78248689192361,0.632073515871632,0,0,1.36175842301515,3.78128297465751,2.71653235943784,2.7863814554107,4.07882537377229,1.96205699362278,2.63278432963394,3.34911444026059,0.704015124191131,1.69465656691056,0.441056796109924,0.65954501176592,2.42196640043858,1.56813604813205,1.43246812803764,0.656563598980245,1.1659233465194,5.19190845629427,3.2465467351592,1.65109494370578,2.59272338317596,4.70921142511728,3.2806614653046,5.26189798375002,8.49892149969276,6.29781535456461,9.25939824489639,1.90934123603023,4.11236791655476,2.64315307264903,1.83609079397062,1.04544148007234,2.18362563746178,1.48350781023303,1.57041565878138,0.523511883968059,1.03691978633434,0,900.217623078652,2.69129782879162,2.48187735685646,3.50012139019286,2.45403664607689,2.19642963138012,2.93393096614385,2.8644964665669,5.7672639434141,67.1603855896297,307.039986670885,3.79213344753814,1.21635129174099,1.1298205288131,2.33857481360031,4.11761400035207,4.17230845040656,5.52899067791857,2.95379054349154,3.53382574818517,4.80102881926499,3.62974266492626,4.97035191772737,3.65604998233252,4.79195298944433,3.40095575422817,1.55390167361845,1.07656627931371,0.503653849092235,1.54551675225752,2.62755465631655,2.01466786693992,1.92931541171159,1.50471631210609,5.0827665835536,5.06357760157895,4.01026859407578,3.95262319390481,6.85082519770642,6.0431511791176,5.40018000185445,4.5032120322422,7.25027854374727,4.14208249401456,1.24544817101012,3.59122386060928,3.75613932659095,2.18796045361465,2.51535795153579,1.83843508450014,1.55572709461131,1.44224540067226,1.28367683836726,3.03236654116557,2.28131369901216,3.01802146217722,2.80924522409647,2.68905640100451,2.92920891673628,2.85776214769844,2.20180219295225,3.6652751888104,1.23625770240992,2.64958056241915,2.74295401908332,2.48466128623072,2.38436189947321,2.47088908274958,2.25862512996793,2.96151127620868,2.74391959309159,2.63069711437843,3.12349461845482,2.80571135828869,2.84724043498018,3.05363895364247,1.63692417267876,2.01417893541756,2.3148793317737,3.49734809113124,3.27504251823572,3.22306581072447,6.31251495827183,3.08827986767322,2.78241402744506
|short_description=p4@Rnf139
}}

Latest revision as of 20:41, 26 September 2015

Short description:p4@Rnf139
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_4_at_Rnf139_5end
Coexpression cluster:MCL_coexpression_mm9:0
Association with transcript: -218bp_to_ENSMUST00000036904, NM_175226, uc007vtq.2_5end
EntrezGene:Rnf139
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p4@Rnf139

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G76.73
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.70
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I61.36
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.60
CD326+ enterocyte, pool2.CNhs13197.11849-124I42.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I71.01
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.93
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E93.36
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E71.55
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F21.17
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E61.71
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F11.52
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E44.11
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E83.06
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A15.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A33.24
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A511.19
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A27.73
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A45.62
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A64.24
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A3109.62
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H23.38
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I92.35
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.32
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D21.61
GP2+ M cell, pool1.CNhs13228.11845-124H92.30
GP2+ M cell, pool2.CNhs13231.11846-124I10.86
GP2+ M cell, pool3.CNhs13240.11847-124I21.08
Ileum epithelium, pool1.CNhs13199.10252-104B91.14
Ileum epithelium, pool2.CNhs13232.10253-104C10.76
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C81.77
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I35.72
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G64.31
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F51.73
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F61.83
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F71.63
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G83.35
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H14.69
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H38.38
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G94.12
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H24.10
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H43.40
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D82.64
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D92.33
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B32.39
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B71.56
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C23.92
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B81.76
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C32.33
Mouse Astrocytes, donor2.CNhs12078.11552-120C41.96
Mouse Astrocytes, donor3.CNhs12107.11633-122C42.88
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A26.38
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I93.63
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A14.71
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C11.80
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E12.58
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C52.58
Mouse Granule cells, donor1.CNhs12131.11713-123C33.84
Mouse Granule cells, donor2.CNhs12357.11731-123E39.52
Mouse Granule cells, donor3.CNhs12108.11636-122C76.97
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.68
Mouse Meningeal cells, donor3.CNhs12109.11639-122D11.78
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C74.05
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D21.42
Mouse Microglia, donor1.CNhs12629.11718-123C81.80
Mouse Microglia, donor2.CNhs12634.11736-123E82.31
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D53.84
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F54.46
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D94.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F15.43
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D54.86
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D25.51
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F22.68
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D64.60
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D36.61
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F34.98
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D73.84
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D45.67
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F45.40
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D85.73
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E48.10
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E57.32
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I64.58
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D64.71
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F64.98
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E16.52
Mouse Schwann, donor1.CNhs12507.11728-123D92.27
Mouse Schwann, donor2.CNhs12573.11746-123F93.10
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G33.77
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F71.72
Mouse hepatocyte, donor1.CNhs13078.11714-123C42.72
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.54
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.65
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.90
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A717.84
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I72.39
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E34.42
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I85.30
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G65.21
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H12.57
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I82.55
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B67.11
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G11.73
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G21.27
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G31.01
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B617.81
accessory axillary lymph node, adult.CNhs10475.1063-29H92.59
adrenal gland, adult.CNhs10508.49-24D71.93
adrenal gland, embryo E14.CNhs11038.406-44C52.60
adrenal gland, embryo E16.CNhs11004.1254-43D61.52
adrenal gland, embryo E17.CNhs11043.1263-45I11.61
adrenal gland, embryo E18.CNhs11026.1262-18F51.96
adrenal gland, neonate N00.CNhs11191.1311-23C12.82
adrenal gland, neonate N25.CNhs11223.1377-27I31.26
amnion, adult pregnant day17.5.CNhs10488.583-22A81.98
aorta, adult.CNhs10498.46-23H10.58
bone (os femoris), adult.CNhs10483.56-12G26.19
bone (os femoris), neonate N02.CNhs11227.1985-43F53.56
bone (os femoris), neonate N16.CNhs11225.1525-43A62.21
bone (os femoris), neonate N20.CNhs11195.1350-25C33.88
cecum, adult.CNhs10467.37-13H41.86
cerebellum, adult.CNhs10494.15-8B22.05
cerebellum, neonate N30.CNhs11135.1395-42I22.51
colon, adult.CNhs10468.36-18H70.51
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C78.27
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D14.80
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D45.59
corpora quadrigemina, adult.CNhs10501.16-22A44.04
corpus striatum, adult.CNhs10487.19-21D83.66
corpus striatum, neonate N00.CNhs11226.630-43F14.27
cortex, adult.CNhs10473.12-14D54.35
cortex, neonate N30.CNhs11107.1392-42F25.11
diencephalon, adult.CNhs10482.20-12F24.36
diencephalon, neonate N30.CNhs11201.1388-42B23.73
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B14.68
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A23.36
epididymis, adult.CNhs10490.58-23B27.08
eyeball, adult.CNhs10484.31-12G41.68
eyeball, embryo E12.CNhs11016.345-16C64.16
eyeball, embryo E14.CNhs10521.399-16E25.52
eyeball, embryo E15.CNhs10593.426-16C95.22
eyeball, embryo E17.CNhs11023.1261-18D42.26
eyeball, neonate N00.CNhs11207.633-15C66.26
eyeball, neonate N01.CNhs11140.1532-43E73.97
eyeball, neonate N02.CNhs11205.1551-44G84.03
eyeball, neonate N16.CNhs11188.777-19A24.14
forelimb, embryo E11.CNhs10596.335-25E22.80
forelimb, embryo E12.CNhs10600.359-14H23.78
forelimb, embryo E13.CNhs10589.384-1E22.99
forelimb, embryo E14.CNhs10577.413-26A83.51
forelimb, embryo E15.CNhs11007.437-20E72.50
forelimb, embryo E17.CNhs10598.1517-43C41.39
forelimb, embryo E18.CNhs11008.1520-43B51.85
gonad, embryo E13.CNhs11044.1564-45I61.99
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C84.21
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D24.37
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D55.11
heart, embryo E11.CNhs10586.331-24E92.69
heart, embryo E12.CNhs11015.353-12F52.58
heart, embryo E13.CNhs11013.376-3I91.26
heart, embryo E14.CNhs10597.403-26D43.08
heart, embryo E15.CNhs11017.431-16C83.15
heart, embryo E16.CNhs11021.457-17C62.16
heart, embryo E17.CNhs11025.479-18E51.16
heart, embryo E18.CNhs11030.1283-20G32.68
heart, neonate N00.CNhs11213.639-21E34.20
heart, neonate N03.CNhs11221.1349-25I23.29
heart, neonate N10.CNhs11118.749-24G11.81
heart, neonate N16.CNhs11209.782-15G11.70
heart, neonate N20.CNhs11127.821-26I63.65
heart, neonate N25.CNhs11196.1351-25D32.63
heart, neonate N30.CNhs11202.1390-42D23.09
hippocampus, adult.CNhs10478.13-16E85.26
hippocampus, neonate N00.CNhs11228.627-43G14.63
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A31.06
intestine, embryo E12.CNhs11019.1251-16I51.92
intestine, embryo E13.CNhs11010.381-16D51.63
intestine, embryo E15.CNhs10602.976-16D81.03
intestine, embryo E16.CNhs10585.463-22H42.02
intestine, embryo E17.CNhs10582.482-18D31.11
intestine, embryo E18.CNhs10526.1289-20F72.28
intestine, neonate N00.CNhs11126.644-26D10.47
intestine, neonate N01.CNhs11192.1322-23E91.15
intestine, neonate N06.CNhs11102.688-20B82.01
intestine, neonate N07.CNhs11095.720-20F22.39
intestine, neonate N10.CNhs11098.755-23A51.56
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E31.08
intestine, neonate N30.CNhs11131.1384-42G10.80
kidney, embryo E14.CNhs10606.411-4I92.47
kidney, embryo E15.CNhs10997.434-16F82.51
kidney, embryo E16.CNhs10584.464-22A51.13
kidney, embryo E17.CNhs11028.483-18I22.44
kidney, embryo E18.CNhs11001.1288-20C72.52
kidney, neonate N00.CNhs11214.646-21G73.09
kidney, neonate N10.CNhs11206.758-6D52.85
kidney, neonate N20.CNhs11113.832-19I11.48
kidney, neonate N25.CNhs11122.1353-25F30.94
kidney, neonate N30.CNhs11203.1385-42H11.11
liver, adult pregnant day01.CNhs10466.508-5B21.48
liver, embryo E12.CNhs10601.355-15F83.50
liver, embryo E13.CNhs10524.378-3H63.34
liver, embryo E14.CNhs10594.409-16E12.47
liver, embryo E15.CNhs10520.433-16D72.64
liver, embryo E16.CNhs10523.462-17F52.17
liver, embryo E17.CNhs10510.481-18A34.07
liver, embryo E18.CNhs10579.499-43G41.44
liver, neonate N00.CNhs11117.641-24F43.73
liver, neonate N03.CNhs11123.1345-25G20.55
liver, neonate N06.CNhs11101.684-20A84.31
liver, neonate N07.CNhs11103.716-20H21.86
liver, neonate N10.CNhs11115.751-24B90.94
liver, neonate N20.CNhs11220.823-25A31.77
liver, neonate N25.CNhs11198.1368-26H10.18
liver, neonate N30.CNhs11106.1382-42D11.93
lung, adult.CNhs10474.28-22B12.03
lung, embryo E12.CNhs10522.354-16G22.46
lung, embryo E14.CNhs10604.404-26F83.75
lung, embryo E15.CNhs11020.432-17C51.53
lung, embryo E16.CNhs10998.458-17B61.64
lung, embryo E17.CNhs10605.480-44A62.68
lung, embryo E18.CNhs10583.1287-20I62.62
lung, neonate N00.CNhs11224.640-42C62.73
lung, neonate N06.CNhs11212.683-20E51.89
lung, neonate N07.CNhs11111.715-19A32.21
lung, neonate N10.CNhs11219.750-23E61.91
lung, neonate N20.CNhs11109.822-18A42.62
lung, neonate N25.CNhs11119.1359-25C71.38
lung, neonate N30.CNhs11133.1394-42H22.89
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A14.52
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.54
mammary gland, adult lactating day02.CNhs10480.595-22B62.46
mammary gland, adult pregnant day19.CNhs10476.588-5H21.10
medulla oblongata, adult.CNhs10477.17-12C25.78
medulla oblongata, neonate N30.CNhs11200.1396-42A34.22
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C73.11
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C25.05
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E12.52
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E21.95
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.86
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D72.87
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D82.23
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D93.40
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D41.62
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D51.75
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D62.37
olfactory brain, adult.CNhs10489.18-22I92.57
ovary, adult.CNhs10507.91-2I71.56
ovary, embryo E18.CNhs11040.505-44H73.38
ovary, neonate N00.CNhs11217.1299-22I43.42
oviduct, adult pregnant day01.CNhs10500.988-6G61.65
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F41.46
pancreas, embryo E15.CNhs11042.1556-45F20.91
pancreas, embryo E16.CNhs11003.460-26E50.94
pancreas, embryo E17.CNhs10599.1558-45G31.48
pancreas, embryo E18.CNhs10580.1535-43I71.54
pancreas, neonate N00.CNhs11105.645-26G91.29
pancreas, neonate N01.CNhs11138.1531-43D72.18
pancreas, neonate N02.CNhs11139.1539-43D81.78
pancreas, neonate N16.CNhs11136.787-43B60.63
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G81.36
pituitary gland, embryo E12.CNhs11018.346-16E63.78
pituitary gland, embryo E13.CNhs11009.370-44C72.72
pituitary gland, embryo E14.CNhs11037.398-44A52.79
pituitary gland, embryo E15.CNhs10592.427-16B94.08
pituitary gland, embryo E16.CNhs11036.449-43F61.96
pituitary gland, embryo E17.CNhs11039.1265-44F52.63
pituitary gland, neonate N00.CNhs11190.1308-22E93.35
placenta, adult pregnant day10.CNhs10472.539-13I70.70
placenta, adult pregnant day17.CNhs10464.577-18G31.69
prostate, adult.CNhs10470.859-1F80.44
skin, adult.CNhs10492.30-1C30.66
skin, neonate N00.CNhs11124.650-25G42.42
skin, neonate N03.CNhs11215.662-22H31.57
skin, neonate N06.CNhs11097.693-20I51.43
skin, neonate N10.CNhs11108.762-6C40.66
small intestine, neonate N16.CNhs11114.790-21I11.17
spinal cord, adult.CNhs10505.24-13C95.19
spleen, adult.CNhs10465.25-2G23.25
spleen, embryo E16.CNhs11035.461-43C11.65
spleen, embryo E18.CNhs11011.1271-21F22.59
spleen, neonate N10.CNhs11116.752-24D14.71
spleen, neonate N20.CNhs11112.824-19H13.28
spleen, neonate N25.CNhs11099.1354-25G35.26
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C68.50
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C96.30
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D39.26
stomach, adult.CNhs10503.33-1H61.91
stomach, embryo E12.CNhs10588.356-43E34.11
stomach, embryo E15.CNhs10603.1252-16G82.64
stomach, embryo E16.CNhs11022.459-17D41.84
stomach, embryo E17.CNhs11006.1035-18D51.05
stomach, embryo E18.CNhs10999.1286-20C62.18
stomach, neonate N03.CNhs11193.1340-24B81.48
stomach, neonate N07.CNhs11210.718-18A91.57
stomach, neonate N25.CNhs11104.1355-25E40.52
stomach, neonate N30.CNhs11134.1386-42I11.04
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G5900.22
testis, embryo E13.CNhs11031.389-23F52.69
testis, embryo E15.CNhs11034.443-27C52.48
testis, embryo E16.CNhs11033.470-26G53.50
testis, embryo E17.CNhs11029.486-18I52.45
testis, embryo E18.CNhs11027.503-18G52.20
testis, neonate N00.CNhs11189.1300-22B72.93
testis, neonate N07.CNhs11222.726-26I42.86
testis, neonate N10.CNhs11204.763-44D95.77
testis, neonate N20.CNhs11110.839-18H367.16
testis, neonate N30.CNhs11130.1391-42E2307.04
thymus, adult.CNhs10471.38-12B53.79
thymus, embryo E14.CNhs11041.402-44I41.22
thymus, embryo E15.CNhs11005.430-45I21.13
thymus, embryo E16.CNhs11002.456-26C52.34
thymus, embryo E17.CNhs10581.478-18C14.12
thymus, embryo E18.CNhs10595.1273-19G44.17
thymus, neonate N02.CNhs11181.1541-43F85.53
thymus, neonate N03.CNhs11137.2104-43C72.95
thymus, neonate N06.CNhs11197.681-26C43.53
thymus, neonate N07.CNhs11211.713-19D34.80
thymus, neonate N10.CNhs11194.748-24E43.63
thymus, neonate N20.CNhs11186.820-7A24.97
thymus, neonate N25.CNhs11125.1362-25G73.66
thymus, neonate N30.CNhs11132.1393-42G24.79
tongue, adult.CNhs10499.32-1B43.40
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H31.55
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F71.08
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.50
urinary bladder, adult.CNhs10481.879-12E41.55
uterus, adult pregnant day19.CNhs10497.590-15F52.63
uterus, adult.CNhs10509.92-27E52.01
vagina, adult.CNhs10502.89-27D51.93
vesicular gland, adult.CNhs10491.51-27F81.50
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A15.08
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A25.06
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A34.01
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D73.95
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A46.85
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A56.04
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A65.40
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A74.50
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A87.25
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A94.14
whole body, embryo E11.CNhs11014.324-5I81.25
whole body, embryo E12.CNhs10587.857-27C93.59
whole body, embryo E13.CNhs10512.372-23H23.76
whole body, embryo E14.5.CNhs10578.420-27D22.19
whole body, embryo E14.CNhs10519.395-14B12.52
whole body, embryo E16.CNhs10514.453-14F21.84
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G51.56
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G51.44
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G51.28
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G53.03
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G52.28
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G53.02
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G52.81
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G52.69
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G52.93
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G52.86
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G52.20
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G53.67
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G51.24
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G52.65
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G52.74
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G52.48
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G52.38
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G52.47
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G52.26
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G52.96
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G52.74
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G52.63
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G53.12
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G52.81
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G52.85
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G53.05
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G51.64
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G52.01
whole body, embryo E17.5.CNhs10513.490-9F92.31
whole body, embryo E17.CNhs10517.475-3I53.50
whole body, embryo E18.CNhs10516.493-3B33.28
whole body, neonate N00.CNhs10525.657-19C23.22
whole body, neonate N01.CNhs10576.659-23C66.31
whole body, neonate N06.CNhs10515.692-21D13.09
whole body, neonate N10.CNhs10518.761-6B42.78





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)7.47e-1023
neuroblast (sensu Vertebrata)7.47e-1023

Uber anatomy
Ontology termp-valuen
regional part of nervous system8.23e-1254
gray matter1.48e-1134
neurectoderm2.39e-1164
neural plate2.39e-1164
presumptive neural plate2.39e-1164
neural tube3.90e-1152
neural rod3.90e-1152
future spinal cord3.90e-1152
neural keel3.90e-1152
pre-chordal neural plate2.52e-1049
central nervous system2.85e-1073
nervous system4.06e-1075
brain grey matter2.01e-0929
regional part of telencephalon2.01e-0929
telencephalon2.01e-0929
ecto-epithelium5.33e-0973
anterior neural tube6.78e-0940
regional part of brain9.56e-0946
regional part of forebrain1.11e-0839
forebrain1.11e-0839
future forebrain1.11e-0839
ectoderm-derived structure1.15e-0895
ectoderm1.15e-0895
presumptive ectoderm1.15e-0895
brain1.36e-0847
future brain1.36e-0847
structure with developmental contribution from neural crest2.20e-0892
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