FFCP PHASE1:Mm9::chr15:54402734..54402768,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=105853|HGNC=|MCL_coexpression_id=2|UniProt=Q8BI08,Q2KHK7|association_with_transcript=-152bp_to_ENSMUST00000025356,NM_178920,uc007vrm.2_5end|description=CAGE_peak_4_at_Mal2_5end|id=chr15:54402734..54402768,+|ontology_enrichment_celltype=CL:0000117!8.69e-08!23;CL:0000337!8.69e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.44e-08,23;CL:0000337,1.44e-08,23;CL:0000068,1.65e-07,3;CL:0002202,1.65e-07,3;CL:0000069,1.65e-07,3;CL:0002632,1.65e-07,3;CL:0002368,1.65e-07,3;CL:0000307,1.65e-07,3;CL:0000377,1.65e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!3.40e-15!34;UBERON:0001049!9.03e-14!52;UBERON:0005068!9.03e-14!52;UBERON:0006241!9.03e-14!52;UBERON:0007135!9.03e-14!52;UBERON:0001017!2.78e-13!73;UBERON:0005743!2.78e-13!73;UBERON:0000073!1.84e-12!75;UBERON:0001016!1.84e-12!75;UBERON:0000955!1.86e-12!50;UBERON:0006238!1.86e-12!50;UBERON:0002616!6.98e-12!49;UBERON:0002791!7.80e-12!29;UBERON:0003528!7.80e-12!29;UBERON:0001893!7.80e-12!29;UBERON:0000033!2.21e-11!63;UBERON:0004121!3.96e-11!102;UBERON:0000924!3.96e-11!102;UBERON:0006601!3.96e-11!102;UBERON:0003080!2.23e-10!40;UBERON:0002021!2.62e-10!10;UBERON:0000411!2.62e-10!10;UBERON:0001950!2.62e-10!10;UBERON:0002780!9.21e-10!39;UBERON:0001890!9.21e-10!39;UBERON:0006240!9.21e-10!39;UBERON:0002346!2.14e-09!71;UBERON:0003075!2.14e-09!71;UBERON:0007284!2.14e-09!71;UBERON:0003056!2.33e-09!49;UBERON:0002619!1.00e-08!17;UBERON:0000956!2.51e-07!21;UBERON:0001869!2.51e-07!21;UBERON:0000203!2.51e-07!21;UBERON:0000025!8.93e-07!114;UBERON:0004111!9.57e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.99e-25,34;UBERON:0002021,1.31e-23,10;UBERON:0000411,1.31e-23,10;UBERON:0001950,1.31e-23,10;UBERON:0000073,2.06e-22,54;UBERON:0001049,1.41e-21,52;UBERON:0005068,1.41e-21,52;UBERON:0006241,1.41e-21,52;UBERON:0007135,1.41e-21,52;UBERON:0001017,8.14e-21,73;UBERON:0001016,4.53e-20,75;UBERON:0003528,1.18e-19,29;UBERON:0002791,1.18e-19,29;UBERON:0001893,1.18e-19,29;UBERON:0003080,1.48e-18,40;UBERON:0002619,2.00e-18,17;UBERON:0002780,3.79e-17,39;UBERON:0001890,3.79e-17,39;UBERON:0006240,3.79e-17,39;UBERON:0000956,4.22e-17,21;UBERON:0001869,4.22e-17,21;UBERON:0000203,4.22e-17,21;UBERON:0000955,1.18e-16,47;UBERON:0006238,1.18e-16,47;UBERON:0002346,2.29e-16,64;UBERON:0003075,2.29e-16,64;UBERON:0007284,2.29e-16,64;UBERON:0004121,1.18e-15,95;UBERON:0000924,1.18e-15,95;UBERON:0006601,1.18e-15,95;UBERON:0002616,1.79e-15,46;UBERON:0003056,3.22e-14,49;UBERON:0010371,1.36e-13,73;UBERON:0010314,1.34e-10,92;UBERON:0004111,7.46e-09,122;UBERON:0011216,1.11e-08,194;UBERON:0002240,1.64e-08,6;UBERON:0005174,1.64e-08,6;UBERON:0001137,1.64e-08,6;UBERON:0000025,4.42e-08,114;UBERON:0003126,1.65e-07,3;UBERON:0001005,1.65e-07,3;UBERON:0007196,1.65e-07,3;UBERON:0001558,1.65e-07,3;UBERON:0001948,5.14e-07,5;UBERON:0002315,5.14e-07,5|phase1_expression=0.160148847104794,0.348975407639361,0.909998478779072,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0.319984845586813,0,0,0,0.430942465371778,0,0,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0.439372365468944,0,0,0,0,0,0,0,0,0,0.606949382578793,2.11596391708813,1.90149421051854,0,0,0,0,0,0.299600110518405,0,0,0,0,1.71390590642282,1.98781686856452,0.122490799214954,0,0,1.10115880999389,1.78762273319263,0.921639199537461,0.527545150920775,0.823388792421687,1.04182674111352,0.558365998002762,1.12552522006336,1.98637722109853,2.94628585473668,2.56269025438385,0.745597783301202,0,0,0.289864488701678,0,1.3599426674155,0,0,0,0.421333260395256,0,0,0,0,0,0,0,7.57718643539249,7.09407623330276,4.04419556011827,0.22836775943812,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,0,0,0,2.09706895166752,10.5225138648284,0.879580464790051,22.7709859451882,21.4800984157478,1.66230435647648,3.24482526135515,0,0,0,0.210441855886474,0,0,0.180062129805349,0,0.0680364991513279,0.2562274405697,0.0937017245597288,0,0,0,0,0,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0.16455984991348,0,0,0,0,0,10.7247873767705,1.64647379806855,0,0.264450566663544,0,0,0,0.201683524623343,0,0.190225626112559,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0,0,0,0,0.0701358198903186,0.316182685621286,0.147610147979602,0,0.493588655687202,0.296452627087149,0,0,0,0,0,0,0.287696137450811,0,0.274561413188081,0,0,0,0,0.179397413521912,0,0.554259570499814,0.189491411770485,0.162964976442026,0,0.234690248288502,0.167506257441816,0.238043640886014,0.585400943573396,0.157635144106191,0.8858587585951,0.159454768657487,1.3109065177259,0.172684981865896,0.433947175744535,0,0,0,0,0.481651769963376,0.586058432961016,0,0,0,0,0.215423397732799,0,0,0,0,0,0,1.28528526568723,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0.178368817602071,0,0,0,0,0,0.65954501176592,0.484393280087717,0.301564624640779,0.835606408021955,0.328281799490123,0,1.11255181206306,0,0,0,0,0,0,0,0,0,3.81868247206045,0,0.203319467126849,0.324016022465404,0.836353184057875,0.436725127492355,0.539457385539283,0.661227645802687,0.523511883968059,0.129614973291793,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.85441652145859,0,0,0,0,0,1.46521299413812,8.1459984050045,0,13.5540442228096,16.5717085142584,17.1868654031819,12.5452823110892,19.182310553578,18.8848474347425,17.550585006027,23.4167025676595,27.6416869480365,24.3347346523355,0,0,0.170733605754134,0,0.209613162627982,0.183843508450014,0,0.618105171716683,0,0.252697211763798,0,0.754505365544305,0,0.320125762024346,0.34461281373368,0.476293691283074,0.115884325944855,0.38581844092741,0,0.147198920134397,0,0,0.238436189947321,0.581385666529314,0.282328141245992,0.0846146078916765,0,0,0.271608227691724,0,0.118635018124174,0.29551344712669,0,0.154936841185966,0,0.749431733813838,0,1.07435527024149,0,0,0|short_description=p4@Mal2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=105853 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BI08,Q2KHK7 | |||
|association_with_transcript=-152bp_to_ENSMUST00000025356,NM_178920,uc007vrm.2_5end | |||
|cluster_id=chr15:54402734..54402768,+ | |||
|description=CAGE_peak_4_at_Mal2_5end | |||
|id=chr15:54402734..54402768,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.69e-08!23;CL:0000337!8.69e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.44e-08,23;CL:0000337,1.44e-08,23;CL:0000068,1.65e-07,3;CL:0002202,1.65e-07,3;CL:0000069,1.65e-07,3;CL:0002632,1.65e-07,3;CL:0002368,1.65e-07,3;CL:0000307,1.65e-07,3;CL:0000377,1.65e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.40e-15!34;UBERON:0001049!9.03e-14!52;UBERON:0005068!9.03e-14!52;UBERON:0006241!9.03e-14!52;UBERON:0007135!9.03e-14!52;UBERON:0001017!2.78e-13!73;UBERON:0005743!2.78e-13!73;UBERON:0000073!1.84e-12!75;UBERON:0001016!1.84e-12!75;UBERON:0000955!1.86e-12!50;UBERON:0006238!1.86e-12!50;UBERON:0002616!6.98e-12!49;UBERON:0002791!7.80e-12!29;UBERON:0003528!7.80e-12!29;UBERON:0001893!7.80e-12!29;UBERON:0000033!2.21e-11!63;UBERON:0004121!3.96e-11!102;UBERON:0000924!3.96e-11!102;UBERON:0006601!3.96e-11!102;UBERON:0003080!2.23e-10!40;UBERON:0002021!2.62e-10!10;UBERON:0000411!2.62e-10!10;UBERON:0001950!2.62e-10!10;UBERON:0002780!9.21e-10!39;UBERON:0001890!9.21e-10!39;UBERON:0006240!9.21e-10!39;UBERON:0002346!2.14e-09!71;UBERON:0003075!2.14e-09!71;UBERON:0007284!2.14e-09!71;UBERON:0003056!2.33e-09!49;UBERON:0002619!1.00e-08!17;UBERON:0000956!2.51e-07!21;UBERON:0001869!2.51e-07!21;UBERON:0000203!2.51e-07!21;UBERON:0000025!8.93e-07!114;UBERON:0004111!9.57e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.99e-25,34;UBERON:0002021,1.31e-23,10;UBERON:0000411,1.31e-23,10;UBERON:0001950,1.31e-23,10;UBERON:0000073,2.06e-22,54;UBERON:0001049,1.41e-21,52;UBERON:0005068,1.41e-21,52;UBERON:0006241,1.41e-21,52;UBERON:0007135,1.41e-21,52;UBERON:0001017,8.14e-21,73;UBERON:0001016,4.53e-20,75;UBERON:0003528,1.18e-19,29;UBERON:0002791,1.18e-19,29;UBERON:0001893,1.18e-19,29;UBERON:0003080,1.48e-18,40;UBERON:0002619,2.00e-18,17;UBERON:0002780,3.79e-17,39;UBERON:0001890,3.79e-17,39;UBERON:0006240,3.79e-17,39;UBERON:0000956,4.22e-17,21;UBERON:0001869,4.22e-17,21;UBERON:0000203,4.22e-17,21;UBERON:0000955,1.18e-16,47;UBERON:0006238,1.18e-16,47;UBERON:0002346,2.29e-16,64;UBERON:0003075,2.29e-16,64;UBERON:0007284,2.29e-16,64;UBERON:0004121,1.18e-15,95;UBERON:0000924,1.18e-15,95;UBERON:0006601,1.18e-15,95;UBERON:0002616,1.79e-15,46;UBERON:0003056,3.22e-14,49;UBERON:0010371,1.36e-13,73;UBERON:0010314,1.34e-10,92;UBERON:0004111,7.46e-09,122;UBERON:0011216,1.11e-08,194;UBERON:0002240,1.64e-08,6;UBERON:0005174,1.64e-08,6;UBERON:0001137,1.64e-08,6;UBERON:0000025,4.42e-08,114;UBERON:0003126,1.65e-07,3;UBERON:0001005,1.65e-07,3;UBERON:0007196,1.65e-07,3;UBERON:0001558,1.65e-07,3;UBERON:0001948,5.14e-07,5;UBERON:0002315,5.14e-07,5 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0.909998478779072,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0.319984845586813,0,0,0,0.430942465371778,0,0,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0.439372365468944,0,0,0,0,0,0,0,0,0,0.606949382578793,2.11596391708813,1.90149421051854,0,0,0,0,0,0.299600110518405,0,0,0,0,1.71390590642282,1.98781686856452,0.122490799214954,0,0,1.10115880999389,1.78762273319263,0.921639199537461,0.527545150920775,0.823388792421687,1.04182674111352,0.558365998002762,1.12552522006336,1.98637722109853,2.94628585473668,2.56269025438385,0.745597783301202,0,0,0.289864488701678,0,1.3599426674155,0,0,0,0.421333260395256,0,0,0,0,0,0,0,7.57718643539249,7.09407623330276,4.04419556011827,0.22836775943812,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,0,0,0,2.09706895166752,10.5225138648284,0.879580464790051,22.7709859451882,21.4800984157478,1.66230435647648,3.24482526135515,0,0,0,0.210441855886474,0,0,0.180062129805349,0,0.0680364991513279,0.2562274405697,0.0937017245597288,0,0,0,0,0,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0.16455984991348,0,0,0,0,0,10.7247873767705,1.64647379806855,0,0.264450566663544,0,0,0,0.201683524623343,0,0.190225626112559,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0,0,0,0,0.0701358198903186,0.316182685621286,0.147610147979602,0,0.493588655687202,0.296452627087149,0,0,0,0,0,0,0.287696137450811,0,0.274561413188081,0,0,0,0,0.179397413521912,0,0.554259570499814,0.189491411770485,0.162964976442026,0,0.234690248288502,0.167506257441816,0.238043640886014,0.585400943573396,0.157635144106191,0.8858587585951,0.159454768657487,1.3109065177259,0.172684981865896,0.433947175744535,0,0,0,0,0.481651769963376,0.586058432961016,0,0,0,0,0.215423397732799,0,0,0,0,0,0,1.28528526568723,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0.178368817602071,0,0,0,0,0,0.65954501176592,0.484393280087717,0.301564624640779,0.835606408021955,0.328281799490123,0,1.11255181206306,0,0,0,0,0,0,0,0,0,3.81868247206045,0,0.203319467126849,0.324016022465404,0.836353184057875,0.436725127492355,0.539457385539283,0.661227645802687,0.523511883968059,0.129614973291793,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.85441652145859,0,0,0,0,0,1.46521299413812,8.1459984050045,0,13.5540442228096,16.5717085142584,17.1868654031819,12.5452823110892,19.182310553578,18.8848474347425,17.550585006027,23.4167025676595,27.6416869480365,24.3347346523355,0,0,0.170733605754134,0,0.209613162627982,0.183843508450014,0,0.618105171716683,0,0.252697211763798,0,0.754505365544305,0,0.320125762024346,0.34461281373368,0.476293691283074,0.115884325944855,0.38581844092741,0,0.147198920134397,0,0,0.238436189947321,0.581385666529314,0.282328141245992,0.0846146078916765,0,0,0.271608227691724,0,0.118635018124174,0.29551344712669,0,0.154936841185966,0,0.749431733813838,0,1.07435527024149,0,0,0 | |||
|short_description=p4@Mal2 | |||
}} |
Latest revision as of 20:00, 26 September 2015
Short description: | p4@Mal2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Mal2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -152bp_to_ENSMUST00000025356, NM_178920, uc007vrm.2_5end |
EntrezGene: | Mal2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.44e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.44e-08 | 23 |
duct epithelial cell | 1.65e-07 | 3 |
epithelial cell of tracheobronchial tree | 1.65e-07 | 3 |
branched duct epithelial cell | 1.65e-07 | 3 |
epithelial cell of lower respiratory tract | 1.65e-07 | 3 |
respiratory epithelial cell | 1.65e-07 | 3 |
tracheal epithelial cell | 1.65e-07 | 3 |
tracheoblast | 1.65e-07 | 3 |