FFCP PHASE1:Hg19::chr4:17579110..17579130,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51056 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18449 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000509583_5end | |||
|cluster_id=chr4:17579110..17579130,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_LAP3_5end | |||
|id=chr4:17579110..17579130,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.79e-32!140;CL:0000037!2.60e-27!172;CL:0000566!2.60e-27!172;CL:0002087!1.08e-26!119;CL:0000766!7.00e-26!76;CL:0002032!1.32e-25!165;CL:0000837!1.32e-25!165;CL:0002009!6.93e-25!65;CL:0002031!1.61e-24!124;CL:0002194!3.08e-24!63;CL:0000576!3.08e-24!63;CL:0000040!3.08e-24!63;CL:0000559!3.08e-24!63;CL:0000988!4.18e-24!182;CL:0002057!4.09e-23!42;CL:0000557!9.60e-23!71;CL:0000839!9.84e-22!70;CL:0000763!2.15e-21!112;CL:0000049!2.15e-21!112;CL:0000860!2.43e-19!45;CL:0000134!2.32e-13!358;CL:0002320!7.51e-12!365;CL:0000048!2.94e-10!430;CL:0000219!7.52e-10!390;CL:0000034!1.40e-09!444;CL:0000723!1.98e-09!436;CL:0000451!2.23e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.35e-17;39!CL:0000234;2.35e-17;39!CL:0000860;4.39e-17;33!CL:0002057;4.39e-17;33!CL:0000576;2.93e-16;48!CL:0000766;2.11e-12;69!CL:0000738;1.59e-08;136!CL:0002087;1.76e-08;104!CL:0000451;2.25e-07;10!CL:0000763;4.31e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.70e-35,136;CL:0000766,4.71e-30,72;CL:0000037,7.26e-30,168;CL:0002087,7.57e-30,115;CL:0002009,2.02e-29,61;CL:0002194,8.60e-29,59;CL:0000576,8.60e-29,59;CL:0000040,8.60e-29,59;CL:0000559,8.60e-29,59;CL:0002032,4.02e-28,161;CL:0000837,4.02e-28,161;CL:0002031,1.97e-27,120;CL:0000988,4.66e-27,177;CL:0000557,9.41e-27,67;CL:0000473,1.18e-26,48;CL:0000234,1.18e-26,48;CL:0000839,1.17e-25,66;CL:0000763,3.08e-24,108;CL:0000049,3.08e-24,108;CL:0000860,4.09e-23,42;CL:0002057,4.09e-23,42;CL:0000134,1.32e-14,354;CL:0002320,5.22e-13,361;CL:0000048,2.07e-11,427;CL:0000219,7.15e-11,386;CL:0000034,1.10e-10,441;CL:0000723,1.58e-10,433;CL:0000451,2.23e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;1.15e-16;42!CL:0000049;7.36e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.57e-24!112;UBERON:0002405!1.55e-22!115;UBERON:0002390!2.91e-22!102;UBERON:0003061!2.91e-22!102;UBERON:0002371!1.58e-20!80;UBERON:0001474!2.24e-18!86;UBERON:0004765!1.63e-17!101;UBERON:0001434!1.63e-17!101;UBERON:0002384!9.29e-11!375;UBERON:0002204!2.69e-09!167;UBERON:0003081!4.29e-09!216;UBERON:0007023!4.49e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,7.98e-28,93;UBERON:0002193,2.09e-27,108;UBERON:0002390,2.32e-25,98;UBERON:0003061,2.32e-25,98;UBERON:0002371,5.61e-24,76;UBERON:0001474,1.98e-21,82;UBERON:0004765,1.01e-19,90;UBERON:0001434,1.38e-18,100;UBERON:0003081,3.62e-13,203;UBERON:0002384,7.59e-12,371;UBERON:0002204,5.55e-10,167;UBERON:0007023,7.28e-09,114;UBERON:0000926,9.17e-07,315;UBERON:0004120,9.17e-07,315;UBERON:0006603,9.17e-07,315 | |||
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| |||
|short_description=p1@LAP3 | |||
}} |
Latest revision as of 21:09, 16 September 2015
Short description: | p1@LAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAP3_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000509583_5end |
EntrezGene: | LAP3 |
HGNC: | 18449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.70e-35 | 136 |
myeloid leukocyte | 4.71e-30 | 72 |
hematopoietic stem cell | 7.26e-30 | 168 |
nongranular leukocyte | 7.57e-30 | 115 |
macrophage dendritic cell progenitor | 2.02e-29 | 61 |
monopoietic cell | 8.60e-29 | 59 |
monocyte | 8.60e-29 | 59 |
monoblast | 8.60e-29 | 59 |
promonocyte | 8.60e-29 | 59 |
hematopoietic oligopotent progenitor cell | 4.02e-28 | 161 |
hematopoietic multipotent progenitor cell | 4.02e-28 | 161 |
hematopoietic lineage restricted progenitor cell | 1.97e-27 | 120 |
hematopoietic cell | 4.66e-27 | 177 |
granulocyte monocyte progenitor cell | 9.41e-27 | 67 |
defensive cell | 1.18e-26 | 48 |
phagocyte | 1.18e-26 | 48 |
myeloid lineage restricted progenitor cell | 1.17e-25 | 66 |
myeloid cell | 3.08e-24 | 108 |
common myeloid progenitor | 3.08e-24 | 108 |
classical monocyte | 4.09e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.09e-23 | 42 |
mesenchymal cell | 1.32e-14 | 354 |
connective tissue cell | 5.22e-13 | 361 |
multi fate stem cell | 2.07e-11 | 427 |
motile cell | 7.15e-11 | 386 |
stem cell | 1.10e-10 | 441 |
somatic stem cell | 1.58e-10 | 433 |
dendritic cell | 2.23e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
immune system | 7.98e-28 | 93 |
hemolymphoid system | 2.09e-27 | 108 |
hematopoietic system | 2.32e-25 | 98 |
blood island | 2.32e-25 | 98 |
bone marrow | 5.61e-24 | 76 |
bone element | 1.98e-21 | 82 |
skeletal element | 1.01e-19 | 90 |
skeletal system | 1.38e-18 | 100 |
lateral plate mesoderm | 3.62e-13 | 203 |
connective tissue | 7.59e-12 | 371 |
musculoskeletal system | 5.55e-10 | 167 |
adult organism | 7.28e-09 | 114 |
mesoderm | 9.17e-07 | 315 |
mesoderm-derived structure | 9.17e-07 | 315 |
presumptive mesoderm | 9.17e-07 | 315 |