FFCP PHASE1:Mm9::chr14:70553458..70553485,-: Difference between revisions
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{{FFCP|EntrezGene=219158|HGNC=|MCL_coexpression_id=22|UniProt=Q8VDP4|association_with_transcript=112bp_to_NM_146055,uc007unf.1_5end|description=CAGE_peak_3_at_2610301G19Rik_5end|id=chr14:70553458..70553485,-|ontology_enrichment_celltype=CL:0000540!1.91e-16!33;CL:0000047!1.91e-16!33;CL:0000031!1.91e-16!33;CL:0000404!1.91e-16!33;CL:0000117!8.96e-15!23;CL:0000337!8.96e-15!23;CL:0002319!1.41e-14!43;CL:0000221!2.08e-14!44;CL:0000133!2.08e-14!44;CL:0000393!1.84e-11!39;CL:0000211!1.84e-11!39;CL:0000055!3.10e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.96e-17,33;CL:0000047,2.96e-17,33;CL:0000031,2.96e-17,33;CL:0000404,2.96e-17,33;CL:0000117,1.71e-15,23;CL:0000337,1.71e-15,23;CL:0002319,6.64e-15,43;CL:0000221,9.86e-15,44;CL:0000133,9.86e-15,44;CL:0000393,5.28e-12,39;CL:0000211,5.28e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.90e-25!73;UBERON:0005743!3.90e-25!73;UBERON:0000073!1.05e-23!75;UBERON:0001016!1.05e-23!75;UBERON:0000153!2.38e-19!94;UBERON:0002346!4.83e-19!71;UBERON:0003075!4.83e-19!71;UBERON:0007284!4.83e-19!71;UBERON:0001049!1.43e-18!52;UBERON:0005068!1.43e-18!52;UBERON:0006241!1.43e-18!52;UBERON:0007135!1.43e-18!52;UBERON:0004121!1.70e-17!102;UBERON:0000924!1.70e-17!102;UBERON:0006601!1.70e-17!102;UBERON:0007811!2.51e-17!86;UBERON:0000955!5.26e-17!50;UBERON:0006238!5.26e-17!50;UBERON:0002616!8.50e-17!49;UBERON:0000033!1.04e-16!63;UBERON:0003056!1.50e-16!49;UBERON:0003080!1.08e-14!40;UBERON:0002780!3.38e-14!39;UBERON:0001890!3.38e-14!39;UBERON:0006240!3.38e-14!39;UBERON:0002020!5.80e-13!34;UBERON:0002791!2.52e-10!29;UBERON:0003528!2.52e-10!29;UBERON:0001893!2.52e-10!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.08e-26,73;UBERON:0001016,2.44e-24,75;UBERON:0002346,1.63e-22,64;UBERON:0003075,1.63e-22,64;UBERON:0007284,1.63e-22,64;UBERON:0000073,1.91e-20,54;UBERON:0004121,2.12e-19,95;UBERON:0000924,2.12e-19,95;UBERON:0006601,2.12e-19,95;UBERON:0001049,2.58e-19,52;UBERON:0005068,2.58e-19,52;UBERON:0006241,2.58e-19,52;UBERON:0007135,2.58e-19,52;UBERON:0003056,3.44e-17,49;UBERON:0010371,1.18e-16,73;UBERON:0000955,3.00e-16,47;UBERON:0006238,3.00e-16,47;UBERON:0002616,4.94e-16,46;UBERON:0003080,3.17e-15,40;UBERON:0002780,1.05e-14,39;UBERON:0001890,1.05e-14,39;UBERON:0006240,1.05e-14,39;UBERON:0002020,2.11e-13,34;UBERON:0010314,2.98e-11,92;UBERON:0003528,1.25e-10,29;UBERON:0002791,1.25e-10,29;UBERON:0001893,1.25e-10,29|phase1_expression=1.44133962394315,0.697950815278722,0.454999239389536,0.30246421130683,0,0.671517087647559,0.467225281191051,2.1950964985068,0.703943610758334,0.234064526321993,0,0.717949430958028,2.9104124088305,3.84649770643589,0.999329285446988,0.809901069559304,0,5.20512572841092,3.97631857456642,2.54633791078818,2.55129870453209,4.76596565764249,2.08959831311148,1.11994695955385,0.22940928106717,0,0.430761996159075,0.215471232685889,0.570070258369122,0.504060259519861,0.221730510655305,0.635030673459631,3.07532393792285,0,1.1554064790051,0,0.612508068787107,2.09265815368454,0.7813353445238,0.523523743973798,1.17646297606203,0,0.485510353031154,1.38486499773135,0.709638518536602,0.734187008646726,1.56478268869608,5.01457859675027,1.5378032791413,2.72201858703997,0.699932108126813,4.31257693094915,3.35565212115473,1.45072428402269,2.68875039313971,0,0.573066879877513,0.515672092277442,12.5436205732951,13.2247744818008,9.50747105259269,1.0165335962074,0.889294796111139,0.449949858640699,0,0.7104801149461,2.69640099466564,3.07374644257244,7.8804105354443,7.96535036156975,9.25429829946081,5.42736870367227,5.52171352379034,12.1265891222804,8.33855597858656,6.43453150627015,3.30347642998166,5.36286819957788,6.29786786350598,14.2437190748609,11.4359554503012,13.022834263919,4.74611098302348,10.1297269805702,5.95913166329559,4.41942878210502,5.97961059356232,12.4887628702951,0.681535739998656,0.755715601067855,0.289864488701678,0.860423876981386,0,0,0.649776417447669,0,0.842666520790511,0.681721290312231,1.29893002301434,0.70667914902068,1.83096445709685,0,0,7.11066703153331,0.216491041011214,1.26679932737549,1.51657333504435,0.45673551887624,3.6251303710604,0.593768556259299,2.60227990149204,0.913396434936424,0.922461989024234,1.65794904607885,1.99900802130698,0.753999547978053,0.494389935468748,0.433798070759735,0.884610551949874,1.94120219936891,0.883366073841574,1.45462575940567,0,1.75668478206928,2.09446706813455,0.510914110417183,2.51611761462433,0.599902730993408,2.03312363316904,5.09288173976397,8.6925114535539,7.66491547888473,3.65031072403781,4.60287823194595,4.36354893575076,5.19172041816825,1.83310854930569,0.995255764880744,0.758168275301024,1.05220927943237,3.90361328888111,3.90833577536904,6.30217454318722,3.61691562805716,3.46986145671772,5.25266253167884,4.77878795254617,1.03481348295606,6.25147179505242,5.10586416453112,4.22282697993477,2.41115305670332,3.61461423993277,2.089512999133,1.02891068203972,2.38841120182192,1.40442637462647,2.31613116403244,1.70498099637356,2.48550927042602,2.1107345398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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=219158 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VDP4 | |||
|association_with_transcript=112bp_to_NM_146055,uc007unf.1_5end | |||
|cluster_id=chr14:70553458..70553485,- | |||
|description=CAGE_peak_3_at_2610301G19Rik_5end | |||
|id=chr14:70553458..70553485,- | |||
|ontology_enrichment_celltype=CL:0000540!1.91e-16!33;CL:0000047!1.91e-16!33;CL:0000031!1.91e-16!33;CL:0000404!1.91e-16!33;CL:0000117!8.96e-15!23;CL:0000337!8.96e-15!23;CL:0002319!1.41e-14!43;CL:0000221!2.08e-14!44;CL:0000133!2.08e-14!44;CL:0000393!1.84e-11!39;CL:0000211!1.84e-11!39;CL:0000055!3.10e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.96e-17,33;CL:0000047,2.96e-17,33;CL:0000031,2.96e-17,33;CL:0000404,2.96e-17,33;CL:0000117,1.71e-15,23;CL:0000337,1.71e-15,23;CL:0002319,6.64e-15,43;CL:0000221,9.86e-15,44;CL:0000133,9.86e-15,44;CL:0000393,5.28e-12,39;CL:0000211,5.28e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.90e-25!73;UBERON:0005743!3.90e-25!73;UBERON:0000073!1.05e-23!75;UBERON:0001016!1.05e-23!75;UBERON:0000153!2.38e-19!94;UBERON:0002346!4.83e-19!71;UBERON:0003075!4.83e-19!71;UBERON:0007284!4.83e-19!71;UBERON:0001049!1.43e-18!52;UBERON:0005068!1.43e-18!52;UBERON:0006241!1.43e-18!52;UBERON:0007135!1.43e-18!52;UBERON:0004121!1.70e-17!102;UBERON:0000924!1.70e-17!102;UBERON:0006601!1.70e-17!102;UBERON:0007811!2.51e-17!86;UBERON:0000955!5.26e-17!50;UBERON:0006238!5.26e-17!50;UBERON:0002616!8.50e-17!49;UBERON:0000033!1.04e-16!63;UBERON:0003056!1.50e-16!49;UBERON:0003080!1.08e-14!40;UBERON:0002780!3.38e-14!39;UBERON:0001890!3.38e-14!39;UBERON:0006240!3.38e-14!39;UBERON:0002020!5.80e-13!34;UBERON:0002791!2.52e-10!29;UBERON:0003528!2.52e-10!29;UBERON:0001893!2.52e-10!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.08e-26,73;UBERON:0001016,2.44e-24,75;UBERON:0002346,1.63e-22,64;UBERON:0003075,1.63e-22,64;UBERON:0007284,1.63e-22,64;UBERON:0000073,1.91e-20,54;UBERON:0004121,2.12e-19,95;UBERON:0000924,2.12e-19,95;UBERON:0006601,2.12e-19,95;UBERON:0001049,2.58e-19,52;UBERON:0005068,2.58e-19,52;UBERON:0006241,2.58e-19,52;UBERON:0007135,2.58e-19,52;UBERON:0003056,3.44e-17,49;UBERON:0010371,1.18e-16,73;UBERON:0000955,3.00e-16,47;UBERON:0006238,3.00e-16,47;UBERON:0002616,4.94e-16,46;UBERON:0003080,3.17e-15,40;UBERON:0002780,1.05e-14,39;UBERON:0001890,1.05e-14,39;UBERON:0006240,1.05e-14,39;UBERON:0002020,2.11e-13,34;UBERON:0010314,2.98e-11,92;UBERON:0003528,1.25e-10,29;UBERON:0002791,1.25e-10,29;UBERON:0001893,1.25e-10,29 | |||
|phase1_expression=1.44133962394315,0.697950815278722,0.454999239389536,0.30246421130683,0,0.671517087647559,0.467225281191051,2.1950964985068,0.703943610758334,0.234064526321993,0,0.717949430958028,2.9104124088305,3.84649770643589,0.999329285446988,0.809901069559304,0,5.20512572841092,3.97631857456642,2.54633791078818,2.55129870453209,4.76596565764249,2.08959831311148,1.11994695955385,0.22940928106717,0,0.430761996159075,0.215471232685889,0.570070258369122,0.504060259519861,0.221730510655305,0.635030673459631,3.07532393792285,0,1.1554064790051,0,0.612508068787107,2.09265815368454,0.7813353445238,0.523523743973798,1.17646297606203,0,0.485510353031154,1.38486499773135,0.709638518536602,0.734187008646726,1.56478268869608,5.01457859675027,1.5378032791413,2.72201858703997,0.699932108126813,4.31257693094915,3.35565212115473,1.45072428402269,2.68875039313971,0,0.573066879877513,0.515672092277442,12.5436205732951,13.2247744818008,9.50747105259269,1.0165335962074,0.889294796111139,0.449949858640699,0,0.7104801149461,2.69640099466564,3.07374644257244,7.8804105354443,7.96535036156975,9.25429829946081,5.42736870367227,5.52171352379034,12.1265891222804,8.33855597858656,6.43453150627015,3.30347642998166,5.36286819957788,6.29786786350598,14.2437190748609,11.4359554503012,13.022834263919,4.74611098302348,10.1297269805702,5.95913166329559,4.41942878210502,5.97961059356232,12.4887628702951,0.681535739998656,0.755715601067855,0.289864488701678,0.860423876981386,0,0,0.649776417447669,0,0.842666520790511,0.681721290312231,1.29893002301434,0.70667914902068,1.83096445709685,0,0,7.11066703153331,0.216491041011214,1.26679932737549,1.51657333504435,0.45673551887624,3.6251303710604,0.593768556259299,2.60227990149204,0.913396434936424,0.922461989024234,1.65794904607885,1.99900802130698,0.753999547978053,0.494389935468748,0.433798070759735,0.884610551949874,1.94120219936891,0.883366073841574,1.45462575940567,0,1.75668478206928,2.09446706813455,0.510914110417183,2.51611761462433,0.599902730993408,2.03312363316904,5.09288173976397,8.6925114535539,7.66491547888473,3.65031072403781,4.60287823194595,4.36354893575076,5.19172041816825,1.83310854930569,0.995255764880744,0.758168275301024,1.05220927943237,3.90361328888111,3.90833577536904,6.30217454318722,3.61691562805716,3.46986145671772,5.25266253167884,4.77878795254617,1.03481348295606,6.25147179505242,5.10586416453112,4.22282697993477,2.41115305670332,3.61461423993277,2.089512999133,1.02891068203972,2.38841120182192,1.40442637462647,2.31613116403244,1.70498099637356,2.48550927042602,2.11073453982987,1.98068267607116,1.65721314909647,0.393528463494808,1.07986979021165,0.465067889500816,1.07309360559848,1.5179494507732,0.822799249567402,0.492502392237286,0.486412857275134,0.584799949701329,0.878200461164203,0.134206418760372,4.20579897128254,6.79170441703277,0.330418782983798,0.793351699990633,4.69234151177515,3.94802342162745,2.19074684247559,1.4117846723634,0.889512175379481,0.951128130562796,0.949058123089023,0.988193728344065,0.251335208800269,0.198956472041151,0.974820435595601,0,0.432276099749388,0.199141273254367,5.50036912763937,3.19895835307241,4.50830942692322,2.64746726198909,1.35766741017338,2.59502533594179,1.7706230394792,1.03327103585722,0.627994911365499,0.987177311374404,0,1.16791574001266,0.786235980452812,1.12431056192427,0.608580364165509,0.72353147925725,0.763877555344259,0.287696137450811,0.972811360650212,0.274561413188081,1.43768206527355,0.744281895337007,0,0.252578877947112,0.179397413521912,0,0.739012760666419,4.16881105895066,4.88894929326078,3.90413697282933,2.81628297946203,1.50755631697634,1.90434912708811,3.51240566144038,2.36452716159286,1.7717175171902,1.91345722388985,0.655453258862952,2.76295970985433,1.44649058581512,1.50791283939272,0,0.491764273019036,0.275936746304732,4.33486592967038,3.98519734413491,0.491804836130026,0.757412781613119,3.78609863299508,3.90438744296638,3.23135096599198,4.30143836314594,4.01037613348309,3.67999490025482,3.23848561339915,3.21481443702443,3.55759000151871,3.21321316421807,0.99358059645788,1.06839362200353,0.977321756121456,0.989820737835213,0,2.42780636154981,2.41858845571801,0.943025398779491,2.36241514304618,1.84461088766356,0,0.727067458955011,0.712994756769443,0.948110273807448,0,0,1.70219802876894,6.12207719706455,5.43306471887569,4.28674070063185,6.0295679438373,4.10248280484762,3.78462747384878,5.48036908406279,0.469343416127421,1.0591603543191,0.220528398054962,0.98931751764888,0.968786560175433,0.784068024066026,0.596861720015682,0.492422699235184,0.291480836629851,3.70850604021019,1.70870880797853,3.50857675537478,2.40752885580625,0.565105371014073,1.23024804948923,2.0590035588587,1.86976272993241,2.51912614182584,2.07299960706636,0,6.32671987162271,3.25311147402958,1.83609079397062,1.04544148007234,1.52853794622324,1.21377911746339,0.578574190077352,0.26175594198403,1.03691978633434,0,2.25477175473676,2.24274819065968,0.827292452285488,1.36115831840833,1.42075805825504,1.68956125490778,2.22978753426933,1.82286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| |||
|short_description=p3@2610301G19Rik | |||
}} |
Latest revision as of 08:07, 26 September 2015
Short description: | p3@2610301G19Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_2610301G19Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 112bp_to_NM_146055, uc007unf.1_5end |
EntrezGene: | 2610301G19Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.96e-17 | 33 |
neuronal stem cell | 2.96e-17 | 33 |
neuroblast | 2.96e-17 | 33 |
electrically signaling cell | 2.96e-17 | 33 |
CNS neuron (sensu Vertebrata) | 1.71e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.71e-15 | 23 |
neural cell | 6.64e-15 | 43 |
ectodermal cell | 9.86e-15 | 44 |
neurectodermal cell | 9.86e-15 | 44 |
electrically responsive cell | 5.28e-12 | 39 |
electrically active cell | 5.28e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.08e-26 | 73 |
nervous system | 2.44e-24 | 75 |
neurectoderm | 1.63e-22 | 64 |
neural plate | 1.63e-22 | 64 |
presumptive neural plate | 1.63e-22 | 64 |
regional part of nervous system | 1.91e-20 | 54 |
ectoderm-derived structure | 2.12e-19 | 95 |
ectoderm | 2.12e-19 | 95 |
presumptive ectoderm | 2.12e-19 | 95 |
neural tube | 2.58e-19 | 52 |
neural rod | 2.58e-19 | 52 |
future spinal cord | 2.58e-19 | 52 |
neural keel | 2.58e-19 | 52 |
pre-chordal neural plate | 3.44e-17 | 49 |
ecto-epithelium | 1.18e-16 | 73 |
brain | 3.00e-16 | 47 |
future brain | 3.00e-16 | 47 |
regional part of brain | 4.94e-16 | 46 |
anterior neural tube | 3.17e-15 | 40 |
regional part of forebrain | 1.05e-14 | 39 |
forebrain | 1.05e-14 | 39 |
future forebrain | 1.05e-14 | 39 |
gray matter | 2.11e-13 | 34 |
structure with developmental contribution from neural crest | 2.98e-11 | 92 |
brain grey matter | 1.25e-10 | 29 |
regional part of telencephalon | 1.25e-10 | 29 |
telencephalon | 1.25e-10 | 29 |