FFCP PHASE1:Hg19::chr4:108745881..108745897,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=166929 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28395 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-140bp_to_ENST00000515332_5end | |||
|cluster_id=chr4:108745881..108745897,+ | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_4_at_SGMS2_5end | |||
|id=chr4:108745881..108745897,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.26e-10!45;CL:0002057!1.74e-10!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.08e-12;33!CL:0002057;2.08e-12;33!CL:0000473;1.14e-07;39!CL:0000234;1.14e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.25e-11,42;CL:0002057,1.25e-11,42;CL:0000473,1.09e-08,48;CL:0000234,1.09e-08,48 | |||
|ontology_enrichment_development_v019=CL:0002057;4.36e-09;42!UBERON:0006595;7.08e-07;86!UBERON:0005795;7.82e-07;10 | |||
|ontology_enrichment_disease=DOID:305!1.88e-11!106;DOID:1749!6.14e-08!14;DOID:299!7.28e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.78e-10;14!DOID:299;1.51e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.72e-13,106;DOID:1749,1.23e-09,14;DOID:299,1.37e-07,25;DOID:0050687,6.34e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000062!4.04e-20!511;UBERON:0000480!8.17e-15!626;UBERON:0000467!1.39e-14!625;UBERON:0000922!5.52e-14!612;UBERON:0002050!1.11e-13!605;UBERON:0005423!1.11e-13!605;UBERON:0000468!1.56e-13!659;UBERON:0000923!2.57e-13!604;UBERON:0005291!2.57e-13!604;UBERON:0006598!2.57e-13!604;UBERON:0002532!2.57e-13!604;UBERON:0000926!2.23e-12!448;UBERON:0004120!2.23e-12!448;UBERON:0006603!2.23e-12!448;UBERON:0004119!4.29e-11!169;UBERON:0000925!4.29e-11!169;UBERON:0006595!4.29e-11!169;UBERON:0001007!3.79e-10!155;UBERON:0001555!3.79e-10!155;UBERON:0007026!3.79e-10!155;UBERON:0004175!1.66e-08!25;UBERON:0004921!2.31e-08!129;UBERON:0004185!2.31e-08!129;UBERON:0003100!4.75e-08!41;UBERON:0005156!5.27e-08!59;UBERON:0000990!5.27e-08!59;UBERON:0005631!1.02e-07!14;UBERON:0000158!1.02e-07!14;UBERON:0003134!1.64e-07!37;UBERON:0000474!1.64e-07!37;UBERON:0000077!1.66e-07!130;UBERON:0005795!2.10e-07!22;UBERON:0003975!2.37e-07!22;UBERON:0004923!3.53e-07!57;UBERON:0000995!6.19e-07!21;UBERON:0003133!8.45e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0004175;9.49e-08;21!UBERON:0005631;2.95e-07;10!UBERON:0000158;2.95e-07;10!UBERON:0000474;3.15e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.97e-10,160;UBERON:0000925,1.97e-10,160;UBERON:0006595,1.97e-10,160;UBERON:0004175,1.17e-09,25;UBERON:0005631,2.34e-09,14;UBERON:0000158,2.34e-09,14;UBERON:0001007,3.46e-09,145;UBERON:0001555,3.46e-09,145;UBERON:0007026,3.46e-09,145;UBERON:0005795,2.76e-08,22;UBERON:0003975,3.20e-08,22;UBERON:0003100,4.75e-08,41;UBERON:0004921,1.03e-07,118;UBERON:0000995,1.05e-07,21;UBERON:0003134,1.36e-07,37;UBERON:0000474,1.36e-07,37;UBERON:0003133,2.72e-07,48;UBERON:0005156,4.66e-07,59;UBERON:0000990,4.66e-07,59 | |||
|phase1_expression=1.2717486548939,0,1.83240725324762,2.00146596706261,0.893922188854576,3.48935409640147,0,0.631719873426831,0,0.737201809504527,0.697801167972428,2.83973783769224,1.05506791291381,0.37129905888014,0.662794751455832,0.672325146451775,0,0.730310090387373,0,0.123121058076788,0,0,1.14494394852423,0.410623275218653,0.125542639594803,0,0,0,0.393364276848904,1.53531759238885,1.23852898652861,0,0.30120591877825,1.10926203050036,0,0,1.46800219667424,3.32397245119126,2.4065333696417,3.47217393145363,0.223915474239924,0,0,0.726991193897824,3.77875943688809,2.18325655069035,1.16214518452842,1.23350366406548,4.64559556342655,1.7261543539329,4.61089271752381,6.14853797710322,10.6871161028352,12.9096936716765,8.12558919566051,2.63539275359647,2.18324920046277,1.57306439111559,6.73384563215986,9.30694178520671,10.2293940127847,1.64925650093358,2.39356389145958,1.27867425159808,5.80418477257168,6.80862269629368,11.2108004819203,2.51248665256743,3.65038042894141,6.73285418585862,4.84319602106695,16.5724936194404,14.2408074348398,0.211255286311942,0.425208599930087,1.04829322754188,0.336985893439485,0.750884464207532,1.6072558669708,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36305137788922,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,7.31420598941885,0.670700859703636,1.91793842765295,0,0.50133791063589,0.869079113764942,0,0.973269740605272,0.945348171640679,0.221729397462564,1.05401742831751,3.27447688744282,0,0.370784442784429,0,0,0,0,0,0.371457501329565,0.198762407366705,0,0.347140501607594,0,0,0.825354125820202,0.208994966536811,0.775250277507987,1.06729878806013,0.66944122552934,0.402829317109147,0,0.24406205754817,0,0.81014194788176,1.69669483739752,0.898117490504679,1.12611480483322,1.53316637465883,0,0.366403487860815,0,0,0,0.993943903390637,1.13967460498122,1.32409180813219,5.16305917347865,1.41867352879343,0,0,0.24666754841716,1.24484414159907,0.67355336034844,0.163461903113459,0.151357427644931,0,0,0.312160076830321,0,0.149448680551801,0,0,0.140450806702248,0.204154171254893,0.245668634623536,0.723280468230358,0,0.741800787835671,0,0,0.168336113954066,0,0.554128230968366,0,0.30648779579902,0,1.47461838108027,0.358779271377724,0,0,0.600182192168805,0,0.257640540045629,0.37223371266318,0,0,0,0.0920498986422993,0.969876340912871,0.710019185033229,0,0.169560592310488,1.54608682530637,1.09098448236334,1.43402297694502,0.121973706129595,0.397589304964456,0.232387885739037,0.10366105501537,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,2.01121560067735,0.674338760312407,1.20505514941741,1.21323370005633,0.653638332277218,1.42362371466658,1.61797569792197,1.17732879075208,1.15424147083917,0,0,0.8231480226628,0,1.26755034821831,1.96565443335525,1.77236972004421,0,0.491953754172454,0.514703430895577,1.20725313949488,0,0.804231779293047,2.12953423864618,0,0,1.44331342025273,0.463721619900307,3.17003474436719,0.144366447761074,0,0.190254152234598,2.37061319387782,0,0,0,0,1.87467667973554,1.84780341018745,0.850650583454319,2.05984602216551,1.74380363108377,0.383382679165211,5.41929561685538,0.088048434013226,1.86595303986695,1.00883967391873,2.14612136824846,0,0,0,0,0,0,0,0,0,0.07333828582095,2.58543431515556,0,0,1.86156681609409,4.16029747645464,0.257207374262142,0,0,1.57275793023962,0,0,0.65147236858747,0.355391948742546,0,2.41151501647669,3.48613383440118,2.59929777073348,0,0.502257091432126,0,0.958499421966331,0,1.42636905040718,1.88215698667853,0.205476322550383,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0,1.27587750330633,1.49801404789436,0,0,0.613457458595699,0,0,1.03985430765404,1.24900292158013,0.473107245101804,1.05427273493442,1.50473049863859,0,0,0,0.553107505625109,0.434418072340414,0,0,0.620304078368662,1.07857100409308,0.213455115606889,6.06255142892519,1.66435439510497,2.72151263996712,1.24053903909388,1.68808170616869,0.561320188866147,2.43464383585832,2.55853624533352,2.41280881715411,0,0.616838775210622,0,0.164254312027618,0.519254429183621,0.232420756919918,1.20859449591622,0.601519410909855,2.20994373446151,1.37777337797528,0.910455840033585,0.917870904715969,0.451199612907412,0.231046011313244,0,0,1.05551628892876,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0.447749509444357,0,0,4.10320200186223,0.656029291399411,7.80908147194327,11.2314702696017,3.93748698718877,4.20798449594999,0,0,0,0.096670718292122,0.616194468458578,0,0.275673144969061,0.644521469209642,0.435050081742686,0.255679882248303,0.801288320820636,3.14041339185858,2.30628080838127,8.0396008871588,2.2254711788221,0,0.62962469366128,0.6970372701606,0,0.532306030317022,0.869932992075073,0.18532421910392,1.14499909393593,0.744316738719335,0.316379424718726,2.47819252100972,0,0.42793898803392,0.636406495851874,0,0.539617372749944,1.09814811894422,0.235624804691373,0,0,0.421258456238981,1.95053495635836,0.243713489631284,1.05650146756755,0.9554993798559,0.848432591722276,0,0,0.66343897524122,0.438450885253763,0,1.31178950409327,0.811641507850816,0,0.845086807596724,1.00387946542836,0.785992328104969,0,0.354761064070598,1.89996871767898,0.658589785919804,0,0.349934720244983,0.384888450902048,0,0,11.2031122924367,0,0,0,1.37834040124176,0,0.764637207142375,0,0.476463550915578,0,0,0,0,0,1.92495971052672,10.7817695031654,0,0,0,0,0,0,0.211673582723883,0,1.12318871245384,0,0,2.50634477090067,0,0,0,2.12923118845163,0,0,0.447352215784832,0,0,0,0,0,0.99921590399346,0,5.61421621224659,0.293016358543788,0.242721043499027,0,1.70481688083848,45.1227076154234,21.0844923391173,27.0301417847324,0,0.140669416410513,1.8922479853894,0.824019371133798,2.11125408127993,3.38721580026819,4.69682656402951,0.503865495708552,1.02268682502155,0.123084805461069,0.311039587661807,8.98683511473268,11.457355179239,0,2.76201535783414,0,2.22273980289274,0.969332746095218,0.371072392647405,0,1.82299432759663,3.23601999985924,2.89999830173917,1.365521379426,18.8147701216647,3.30942754475111,1.03423011972439,1.45802306691627,0.694499979733169,0.885741385813839,0.60298219312704,3.05163472634166,0.774054819518572,0,1.97446857438575,1.30726156222788,7.38945844676597,1.61595542857974,1.48124672601102,0.23056390438806,0,0.108647371922008,29.6671078550685,3.66390373607449,16.5240780565777,0,0,0.166211681900156,0,0,0,0,0.158936578980379,1.05499032264014,10.7733653385037,0.565412285735763,0.649165919226273,3.98104772431402,12.8263468529842,1.22206028986725,0.889563386041866,0.370691816839509,0.417687798021821,1.48282492557489,0.802577647298789,0,0,7.43525551941941,2.18502341580683,4.3404284313433,3.62972148145992,0,2.14834370736859,8.56843490662608,2.07376382794494,1.99396161812156,0.661983911750998,0,0,1.13843818411917,1.24807205711825,4.16543372004314,16.3647303682011,3.83060508953771,5.2418000472609,1.37588825977293,1.25783230675811,1.75414361006845,0.656923656425674,4.84945082442097,1.059073520298,1.80784592624426,0.411125773940253,0.19871461170299,0.253243183823515,1.75996244461323,4.56905275433742,10.0322907527496,3.59657297247834,1.00863292007874,1.37443915399099,0,3.45731515171559,2.48505071130865,4.24249262310232,1.22313785466253,0.941425616810999,0.713987523454252,0.577901179803038,0,0.273810757783986,0,4.72741985561953,0,2.23425921017803,2.7499250881402,7.17873024576814,5.39133301347276,0.858452096273142,2.4548860318606,0.53746777989381,0,0,0.236349546921671,0,0.0674035438541849,4.4292366681637,0,0,0.817220436669454,0,0.412618309791701,0,31.7213187087616,101.368056047091,0.485996453264197,0.670869375198532,7.56534790072303,4.30127622706984,2.53440807646576,0.179287339332845,5.18171032762502,1.42939065274673,0.662091970365432,2.034148301238,2.17199840701485,3.45688596480507,3.26587360109409,2.39460383124975,0.246277562248017,0.170388021785422,1.69968137280189,1.17241786942466,1.32506888912221,0.646414781807753,0.39669780522807,4.10608410922391,2.11444506695002,18.0470727239404,25.1526888159466,12.4271716604159,0,1.58089305518355,0,17.2352139597949,2.1760712134779,2.2562090462043,3.06345576763462,3.27872630709804,0.314108192500469,0,0.488105059607853,0.1251909307065,18.3490942620823,6.10109783452688,1.4903136705932,4.98055085770431,0.74988244777264,0,0,1.6468607378872,0,0,0.895528817321244,0,0.554805861502613,0.189403005275089,0.251567901752575,0,0.915360273587694,1.05861646634267,0.932623203496683,0.73927574994817,0.477890301491107,0,0.310525913752519,3.31764966272684,0.265841714557995,1.04349012362347,0.751288044986092,3.42724690951916,1.22061219961398,0.181848659202559,1.18151612746737,0.464033759878494,1.19428766609585,0,0.343395705182793,0.673498977531838,0,1.34833881285112,1.71553273099941,0,0.226705925512272,2.31522474323834,1.71315693154527,0.358177682162975,0.308801447160972,1.75427239662966,1.06013487567529,2.70079653579281,3.37884881306145,0.512483037175893,1.0362910251936,0.911579868532147,0.553033744606923,2.14346339723327,2.92302648689399,2.12635012532597,0.655219697692825,1.96618327002975,6.33936370075881,0,0,0,0,0.184105950251841,2.23807212351111,1.86623178009892,0.76736622782191,0,0.471797825567689,0,0,0,0.247871528518004,0,2.22603045457393,0,0,0.705351887381368,0.6124909547064,0.578063025868136,0,0.159633859057151,0.205116364240755,0,0.138314504928436,0.645902582527404,1.42769420259154,8.63699922809025,3.30315225373673,4.03542916747694,9.58863029047807,0.762764190934334,0,5.76857044137197,2.03067886542995,1.0085253435176,3.12605604493237,0,2.62035068016155,18.9255790357818,0.135075169236789,0,0.826747186004736,0.380494861163441,0,3.28954660114309,1.98484471355718,0,4.34392253974624,1.60710550763486,1.68141861109412,6.67662164660295,5.69155478378244,23.7722352035872,0.230467975111559,1.20041606606193,0.339848664884159,0.197318320688547,1.53651993149159,2.8920164491938,3.53218917827313,0,0.840816489941367,0.913158720509496,2.37520350340484,0.9555033757741,9.36342728714198,0,0,0,0.801711364730253,2.27937780579341,1.53646629384555,5.53007729451273,10.7556839705069,0.118332000730565,0,2.11693525095465,11.2262365586585,7.44495325594368,1.91107787795487,2.9082412267426,3.4352581765335,3.16986604953901,2.58971534875158,2.56657017140618,1.1598144313382,1.45713297917742,2.10545517115895,0,0.237840181555137,0.33883824611688,0.109940516745429,0.150962843566674,18.2902754715829,4.15263164957519,0,3.43207650455468,0,2.74831853960923,0,0.8453114551668,0.849635573439084,0,0.257831551894309,0,5.71372603538104,3.17605384544123,4.65399926797176,4.3820183294791,15.5967956357544,0,0,0.271965960763659,0,6.34832208618481,0,0.924351257262837,0,1.00933139868063,0,0,0.305966489225945,0,0.18378979906969,0,1.43979526614655,1.07185652062471,0,0.20686599172379,5.5440835294255,9.04644839562213,0.129177819672012,0.248298857183432,2.91542842709595,19.3487361165621,13.9460860381171,3.04803447055746,0.342233301085281,1.88585748440845,8.31977582555046,4.32458463509817,3.90735689332678,0.640364075266293,0,5.29968692428863,0,2.5670703278402,5.2896503181046,3.99454064511308,0.603821380773079,0 | |||
|short_description=p4@SGMS2 | |||
}} |
Latest revision as of 07:39, 20 September 2015
Short description: | p4@SGMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SGMS2_5end |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | -140bp_to_ENST00000515332_5end |
EntrezGene: | SGMS2 |
HGNC: | 28395 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.25e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.25e-11 | 42 |
defensive cell | 1.09e-08 | 48 |
phagocyte | 1.09e-08 | 48 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.97e-10 | 160 |
endoderm | 1.97e-10 | 160 |
presumptive endoderm | 1.97e-10 | 160 |
internal genitalia | 1.17e-09 | 25 |
extraembryonic membrane | 2.34e-09 | 14 |
membranous layer | 2.34e-09 | 14 |
digestive system | 3.46e-09 | 145 |
digestive tract | 3.46e-09 | 145 |
primitive gut | 3.46e-09 | 145 |
embryonic uterus | 2.76e-08 | 22 |
internal female genitalia | 3.20e-08 | 22 |
female organism | 4.75e-08 | 41 |
subdivision of digestive tract | 1.03e-07 | 118 |
uterus | 1.05e-07 | 21 |
female reproductive organ | 1.36e-07 | 37 |
female reproductive system | 1.36e-07 | 37 |
reproductive organ | 2.72e-07 | 48 |
reproductive structure | 4.66e-07 | 59 |
reproductive system | 4.66e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.72e-13 | 106 |
squamous cell carcinoma | 1.23e-09 | 14 |
adenocarcinoma | 1.37e-07 | 25 |
cell type cancer | 6.34e-07 | 143 |