FFCP PHASE1:Hg19::chr4:106156933..106156947,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54790 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=25941 | |||
|TSSclassifier=strong | |||
|UniProt=Q6N021 | |||
|association_with_transcript=20bp_to_AK027819_5end | |||
|cluster_id=chr4:106156933..106156947,+ | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_3_at_TET2_5end | |||
|id=chr4:106156933..106156947,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.96e-25!42;CL:0000860!1.04e-23!45;CL:0000766!2.49e-23!76;CL:0000557!1.37e-21!71;CL:0002009!1.95e-21!65;CL:0000763!2.44e-21!112;CL:0000049!2.44e-21!112;CL:0002194!1.04e-20!63;CL:0000576!1.04e-20!63;CL:0000040!1.04e-20!63;CL:0000559!1.04e-20!63;CL:0000839!1.78e-20!70;CL:0000738!2.10e-17!140;CL:0000037!2.91e-17!172;CL:0000566!2.91e-17!172;CL:0002032!4.19e-17!165;CL:0000837!4.19e-17!165;CL:0002087!5.69e-15!119;CL:0002031!1.35e-14!124;CL:0000988!3.63e-14!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.84e-36;33!CL:0002057;1.84e-36;33!CL:0000473;2.14e-29;39!CL:0000234;2.14e-29;39!CL:0000576;3.12e-23;48!CL:0000766;6.33e-19;69!CL:0000763;3.60e-10;100!CL:0002087;5.78e-10;104!CL:0000738;4.56e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.55e-42,42;CL:0002057,2.55e-42,42;CL:0000473,2.25e-41,48;CL:0000234,2.25e-41,48;CL:0000766,3.36e-37,72;CL:0002009,2.18e-33,61;CL:0000557,3.43e-33,67;CL:0002194,3.77e-33,59;CL:0000576,3.77e-33,59;CL:0000040,3.77e-33,59;CL:0000559,3.77e-33,59;CL:0000839,3.72e-32,66;CL:0000738,8.54e-29,136;CL:0000763,3.34e-28,108;CL:0000049,3.34e-28,108;CL:0002087,2.68e-26,115;CL:0000037,1.22e-25,168;CL:0002032,5.80e-25,161;CL:0000837,5.80e-25,161;CL:0002031,2.21e-24,120;CL:0000988,4.58e-23,177;CL:0000134,1.62e-07,354;CL:0002320,3.06e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.32e-31;42!CL:0000049;5.05e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.04e-19!102;UBERON:0003061!4.04e-19!102;UBERON:0002193!4.54e-17!112;UBERON:0002371!5.97e-17!80;UBERON:0001474!1.69e-15!86;UBERON:0004765!8.17e-14!101;UBERON:0001434!8.17e-14!101;UBERON:0002405!1.14e-10!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.79e-07;15!UBERON:0000179;1.79e-07;15!UBERON:0000463;1.79e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.37e-31,98;UBERON:0003061,1.37e-31,98;UBERON:0002193,5.10e-28,108;UBERON:0002371,2.96e-27,76;UBERON:0001474,4.78e-24,82;UBERON:0002405,1.51e-21,93;UBERON:0004765,2.34e-21,90;UBERON:0001434,1.31e-18,100;UBERON:0003081,6.60e-10,203;UBERON:0002204,4.09e-08,167;UBERON:0000178,1.02e-07,15;UBERON:0000179,1.02e-07,15;UBERON:0000463,1.02e-07,15;UBERON:0002384,3.99e-07,371 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0,0.872338524100369,0,0,0,0,0,0.218441372130172,0,0.37129905888014,0,0.672325146451775,0.602694528023977,0,0,0,0,0,0.286235987131057,0.547497700291537,0.376627918784408,0.382067028739756,0.57470412614962,0.944529375764151,0,0.383829398097213,0.154816123316076,0,0,0,0,0.284338464974843,0,1.10799081706375,2.60707781711184,2.82114131930607,0.671746422719773,0.32389366601898,0.257575567634187,4.9435401185052,3.02300754951048,3.15359279544161,5.11343881192506,6.16751832032739,8.3620720141678,8.34307937734236,5.63553554364021,5.43909128743746,5.17118521104928,4.51839278508678,5.41705946377367,9.97684399575805,5.18521685109907,3.59557575112135,9.18251677112708,6.73950956859797,14.0654167675789,4.94776950280074,4.78712778291916,3.83602275479425,16.5419266018293,6.80862269629368,5.60540024096017,11.0549412712967,13.037072960505,4.77815458351257,9.6863920421339,3.31449872388808,6.0127853613768,1.47878700418359,1.06302149982522,1.25795187305026,1.12328631146495,0.901061357049038,2.57160938715328,0.570025487482497,2.18808344918999,0.730656615058536,0,0,0,0,0.400395987036012,0,0,0,2.27685187643779,1.17447437874188,3.44045905312706,0,0.560508562981536,0,0.786839080455332,1.96505381374582,1.23360899399706,0.334372990781356,0,0,0,0.445641827540694,0,0.443067789167242,1.08321545506006,0.640456598628376,0.650296737799391,0.657751618414705,0.552700035571697,1.15921234294021,0.444859689486181,0,0,0.226618685395132,0,0,0.506039384039006,0.318565414324097,0,0,0.150575119077773,0.383959833463255,0,0,0,0.201606743224732,1.33720097891754,1.01377082717959,0,1.34140171940727,0.255725123687061,1.0843174571537,0.50133791063589,1.01392563272577,0,0,0.378139268656271,0.665188192387692,0.175669571386252,0.0654895377488563,0,0.741568885568859,0,0.696518949197069,1.59549552622638,0.715471872916026,0,0.371457501329565,0.198762407366705,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0.44905874525234,0,0,0,0.183201743930407,6.58902087180316,3.87780264148325,0.436094052142534,0,0.25326102332916,0.132409180813219,0.573673241497627,0.709336764396714,0.560677600142307,0,0,0,0.269421344139376,0.490385709340376,0,0,0,0,0,0.149448680551801,0.23486899728753,0.161872944368132,0.140450806702248,0,0.61417158655884,0,1.18800285728205,0.247266929278557,0,0,0.841680569770331,0.125118519871964,0,0.438977620880838,0.919463387397059,0.300476117813194,0.340296549480063,1.61450672119976,0.85422955527427,0,0.300091096084402,0.206105058476878,0.257640540045629,0.37223371266318,0.168776332241266,0.487185025805993,0.252433774244115,0.184099797284599,0.323292113637624,0.710019185033229,0.10075209822764,0.339121184620975,0.193260853163297,0.545492241181669,0,0.121973706129595,0,0.116193942869518,0.414644220061482,0,0.36497735907583,0,1.28648187638577,0,0,0,0.591534000199219,0.337169380156203,1.44606617930089,0.441175890929576,0,0.237270619111097,0.404493924480493,0.392442930250692,0.38474715694639,0,0,0.4115740113314,0,2.53510069643662,2.94848165003288,0.590789906681404,0.441463099414651,0.122988438543114,0,0.439001141634502,0,0.301586917234893,0.740707561268237,0,0,0,0.463721619900307,0.234817388471643,0.144366447761074,0.462985512576611,0.951270761172991,0,0,0.984868024349589,0,0.743155811443641,0,0.335964256397719,0.283550194484773,0.447792613514241,0.581267877027924,0,1.47798971368783,1.32072651019839,0.829312462163088,0.288239906833923,1.00993946741104,0.126995788584338,0.381988425558278,0,0,0.308482478109971,0.300343057843917,0.285826432630578,0,0,0.1466765716419,0.129271715757778,0,0,0.797814349754612,0,0,0,0,1.00084595560703,0,0.823240336780769,0,0,0,0.301439377059586,0,0.799783929456456,2.43247561282381,1.00451418286425,8.43335757932127,0.479249710983165,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0.112085143993527,1.37921532141349,1.2937654491571,1.79680250791648,0.254094624222463,1.30139853857622,2.31986643833309,0,3.82763250991898,25.4662388142042,44.8742188806037,5.8018171881045,0.24538298343828,1.00034104211935,0.271265023699736,0.831883446123229,0.356857977594324,0.788512075169673,0.35142424497814,0,0,0,1.32845119707087,0.184369168541703,0.173767228936166,0,0,1.03384013061444,1.72571360654893,2.56146138728266,0,0,0.30239029332968,0,0.153461973288062,0.561320188866147,0.256278298511402,0,0.482561763430822,0,0.308419387605311,0.177561725313127,0.0821271560138091,1.03850885836724,0.232420756919918,0.241718899183244,1.00253235151642,0.460404944679482,0.229628896329213,0.546273504020151,0.524497659837696,0,0.539107359730903,0,0,0.105551628892876,0,0,0.647747748306418,0,0,0,0,0,0,0.219259876645935,0,0.256450125116389,0,0,0.412164046590889,0.824125183365091,0.660075999364704,0,0.650060246036521,0,0.386682873168488,0.462145851343933,0.15350367472613,0.275673144969061,0.214840489736547,0.435050081742686,0.255679882248303,0.534192213880424,0.495854746082934,0.384380134730212,1.14851441245126,1.6185244936888,0.464845549297286,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0.42793898803392,0,0,0,0.823611089208164,0,0,0,0,0,0.731140468893853,0,0.136499911407986,0.565621727814851,0,0.551365343546124,0,0,0,0,0.202910376962704,0,0,0.143411352204052,0.196498082026242,0.35667105148125,0,0.211107635297664,1.64647446479951,0,0,0,0,0,0.564862804660675,0,0,0,0.459446800413919,0.507447609232169,1.52927441428475,2.84823593587081,1.42939065274673,2.87953591160336,1.29694662238543,1.62009431171434,3.17250070517708,1.1750647824022,0,0.980160863924127,1.11481905075431,0.144269212976445,0.711418433484141,1.11598390910176,0.997896857164083,0.191505370132367,0.846694330895531,0.649243880549111,1.40398589056729,1.14117339516596,0.783399478865116,0,1.18504244461122,1.92705690124439,3.8341944366299,0.425846237690326,0,1.53620382154229,0.671028323677248,0,0.390776190804081,0,1.23087398947712,0.270455678475983,0.99921590399346,0,0.37428108081644,0.879049075631364,0,0.111443384277478,0,0,0,0.307160702099232,0.994147647766298,1.40669416410513,0.111308705022906,0.824019371133798,1.90012867315194,0,0,0.251932747854276,0,1.72318727645497,0,0.179736702294654,0.537063524026827,0,0.295930216910801,2.3948309234694,0,0,0.463840490809256,0,1.30213880542617,0.787139999965761,0.724999575434793,0.682760689712998,1.27126825146383,1.65471377237555,0,1.16641845353302,1.90987494426621,0,0.964771509003264,1.52581736317083,0.221158519862449,0,0.219385397153973,0.10893846351899,0.83654246567162,0.692552326534174,0,1.1528195219403,0.807818799687949,0.977826347298073,0.31900115973192,0.183195186803725,2.66517388009317,0,0.470940769185074,1.16348177330109,0.451191321234361,1.17637520590644,0.335643173951685,0.75901493089674,0.635746315921515,1.47698645169619,0.163232808159148,0.282706142867882,0.649165919226273,0,0.353830258013357,1.83309043480088,0,0.370691816839509,0.104421949505455,0.134802265961354,0.802577647298789,0,0.364909578431332,0.391329237864179,0,1.57833761139756,2.41981432097328,0.61214552326098,0.442306057399416,0.150323419414493,0.103688191397247,0,0.330991955875499,0.313932918407225,0,0,1.66409607615766,1.56203764501618,0.195984794828755,0.0870592065804026,1.04836000945218,0.859930162358083,0.387025325156341,0.511625219603299,0.246346371159628,0.290967049465258,0.706049013532002,0.451961481561065,0.274083849293502,0.596143835108969,0.379864775735272,0.782205530939212,0.400794101257669,0.640358984218058,1.59847687665704,0.72045208577053,0.229073192331831,2.05913997434357,0,0.248505071130865,0.942776138467182,0.67952103036807,0.941425616810999,0.509991088181609,0.288950589901519,0,1.50595916781192,0,0.429765441419957,1.31443677139657,1.11712960508902,2.52076466412852,0,1.39775300349294,0,0,0.268733889946905,0,0,0,0.164831716762333,0.202210631562555,0.688992370603241,0.0846733320657845,0,1.0896272488926,0.160753148465019,0.275078873194468,0,2.92466059016951,0.77380195455795,0,1.34173875039706,0.788057072991982,0.104909176269996,0.211200673038813,0,0.383830394638891,0,0,0.5085370753095,0,0,0.653174720218818,0,0.410462603746695,1.02232813071253,0.226624183040251,0.146552233678082,0,0.517131825446202,1.45455861916959,0,0,0.961086713109252,0.314408610199332,1.65695622138878,1.9846640872478,0.395223263795889,0.852548188666271,0,0,0,0,0,0.471162288750703,0,2.19647276823534,0.751145584238999,0,1.10929051536852,0,1.10678907948985,0.249960815924213,0.151649117541648,0.570930667089935,0.235265819698172,0.936669811613763,0.434763085832475,0,0.233713309847224,0.554805861502613,0.378806010550178,0.50313580350515,0,0.228840068396924,0.302461847526478,0.777186002913902,0.591420599958536,0.63718706865481,0.449803112163605,0.155262956876259,0.829412415681711,0.53168342911599,1.04349012362347,0.601030435988874,0.380805212168795,0,0.181848659202559,0.322231671127465,0.464033759878494,1.59238355479446,0,1.03018711554838,0.336749488765919,0,0,0.214441591374926,0.782982875895635,0,0,0.489473409012935,0.358177682162975,0,0.438568099157414,0.176689145945881,0.192914038270915,0.168942440653073,0,0.345430341731199,0,1.10606748921385,0.194860308839388,0.132864840313363,0.654261577023377,1.63804924423206,0.491545817507439,0.422624246717254,0.19998739585493,0,0.688859918643263,0,0.368211900503681,0.139879507719444,0,0.511577485214607,0.754773679776773,0.786329709279482,0.655257829152084,0,2.76347396132188,2.85052257795705,0.558644917973244,0.318004350653419,0,0,0,0.3062454773532,0.385375350578757,0,1.27707087245721,0.615349092722265,1.51243017733031,0,0.645902582527404,1.42769420259154,0.588886311006154,0,0.366857197043358,0.231051332300676,0,0,0,0.376051641746286,0,0,0.785720083444267,0.982631505060581,0.147856086217045,0.0675375846183947,0,1.65349437200947,0.0634158101939068,2.18789923607288,0,2.97726707033577,0.527613733078862,1.27762427639595,0.535701835878287,1.00885116665647,0.606965604236632,0.455324382702595,0.709618961301111,1.15233987555779,0.685952037749674,0.40781839786099,0.0657727735628491,0.590969204419841,0.222462803784138,0.549451649953598,0.785577949580009,0,0.913158720509496,0.647782773655864,3.34426181520935,0.142953088353313,0.632054446930906,0.116241425368125,0.521574816907738,0,0.207216164163037,0.51215543128185,1.38251932362818,0,0.236664001461131,0,1.27016115057279,0,0.31020638566432,1.91107787795487,0.335566295393377,0.098150233615243,0.243835849964539,1.94228651156368,0.821302454849976,1.1598144313382,2.91426595835484,0.233939463462106,1.19370465096821,0,0.67767649223376,0.439762066981716,0.754814217833368,0.308696632431779,1.96703604453562,0.940634592723046,1.22574160876953,0,1.37415926980462,1.18818560130834,0.4226557275834,0.679708458751268,0.845855261818682,0,1.89888196257365,0.71421575442263,1.05868461514708,0,0,0.917458566809082,2.15009374727177,0.631086248772738,0.0679914901909147,0.872701380680755,1.0580536810308,1.11598505450025,0,1.29787968637137,0.126166424835079,0,0.506794004045748,0.203977659483963,0.26721740526556,0.0918948995348449,0,0.530450887527676,0,0.829169439458779,1.55149493792843,0.639701945702943,0.952257725854961,0.452122368852043,0.0620747142958579,0.560659312903067,0.445530107947154,1.41482032270754,0.653150243690884,1.71116650542641,0.134704106029175,0.286888821570705,0.99798106963804,0.244209805832924,0.960546112899439,1.9307228228694,0.179650404213174,7.03922827210363,0.244482888365733,0.406896178315738,0.665756774185513,0.201273793591026,2.24397944612263 | |||
|short_description=p3@TET2 | |||
}} |
Latest revision as of 06:14, 20 September 2015
Short description: | p3@TET2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TET2_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 20bp_to_AK027819_5end |
EntrezGene: | TET2 |
HGNC: | 25941 |
UniProt: | Q6N021 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.55e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.55e-42 | 42 |
defensive cell | 2.25e-41 | 48 |
phagocyte | 2.25e-41 | 48 |
myeloid leukocyte | 3.36e-37 | 72 |
macrophage dendritic cell progenitor | 2.18e-33 | 61 |
granulocyte monocyte progenitor cell | 3.43e-33 | 67 |
monopoietic cell | 3.77e-33 | 59 |
monocyte | 3.77e-33 | 59 |
monoblast | 3.77e-33 | 59 |
promonocyte | 3.77e-33 | 59 |
myeloid lineage restricted progenitor cell | 3.72e-32 | 66 |
leukocyte | 8.54e-29 | 136 |
myeloid cell | 3.34e-28 | 108 |
common myeloid progenitor | 3.34e-28 | 108 |
nongranular leukocyte | 2.68e-26 | 115 |
hematopoietic stem cell | 1.22e-25 | 168 |
hematopoietic oligopotent progenitor cell | 5.80e-25 | 161 |
hematopoietic multipotent progenitor cell | 5.80e-25 | 161 |
hematopoietic lineage restricted progenitor cell | 2.21e-24 | 120 |
hematopoietic cell | 4.58e-23 | 177 |
mesenchymal cell | 1.62e-07 | 354 |
connective tissue cell | 3.06e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.37e-31 | 98 |
blood island | 1.37e-31 | 98 |
hemolymphoid system | 5.10e-28 | 108 |
bone marrow | 2.96e-27 | 76 |
bone element | 4.78e-24 | 82 |
immune system | 1.51e-21 | 93 |
skeletal element | 2.34e-21 | 90 |
skeletal system | 1.31e-18 | 100 |
lateral plate mesoderm | 6.60e-10 | 203 |
musculoskeletal system | 4.09e-08 | 167 |
blood | 1.02e-07 | 15 |
haemolymphatic fluid | 1.02e-07 | 15 |
organism substance | 1.02e-07 | 15 |
connective tissue | 3.99e-07 | 371 |