FFCP PHASE1:Mm9::chr14:121434685..121434701,+: Difference between revisions
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{{FFCP|EntrezGene=223254|HGNC=|UniProt=F8VPU2|association_with_transcript=-84bp_to_ENSMUST00000026635_5end|description=CAGE_peak_4_at_Farp1_5end|id=chr14:121434685..121434701,+|ontology_enrichment_celltype=CL:0000117!1.14e-09!23;CL:0000337!1.14e-09!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.96e-10,23;CL:0000337,3.96e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!8.87e-17!52;UBERON:0005068!8.87e-17!52;UBERON:0006241!8.87e-17!52;UBERON:0007135!8.87e-17!52;UBERON:0000955!1.21e-15!50;UBERON:0006238!1.21e-15!50;UBERON:0003080!3.26e-15!40;UBERON:0002616!3.85e-15!49;UBERON:0002780!4.96e-15!39;UBERON:0001890!4.96e-15!39;UBERON:0006240!4.96e-15!39;UBERON:0000033!5.88e-14!63;UBERON:0003056!2.00e-13!49;UBERON:0002020!2.35e-13!34;UBERON:0001017!4.66e-13!73;UBERON:0005743!4.66e-13!73;UBERON:0002346!3.25e-12!71;UBERON:0003075!3.25e-12!71;UBERON:0007284!3.25e-12!71;UBERON:0000073!6.01e-12!75;UBERON:0001016!6.01e-12!75;UBERON:0004121!2.02e-11!102;UBERON:0000924!2.02e-11!102;UBERON:0006601!2.02e-11!102;UBERON:0002791!1.01e-10!29;UBERON:0003528!1.01e-10!29;UBERON:0001893!1.01e-10!29;UBERON:0000956!5.97e-10!21;UBERON:0001869!5.97e-10!21;UBERON:0000203!5.97e-10!21;UBERON:0002619!7.37e-08!17;UBERON:0002021!2.23e-07!10;UBERON:0000411!2.23e-07!10;UBERON:0001950!2.23e-07!10;UBERON:0000468!5.09e-07!333;UBERON:0004111!8.13e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.93e-18,54;UBERON:0001049,5.24e-17,52;UBERON:0005068,5.24e-17,52;UBERON:0006241,5.24e-17,52;UBERON:0007135,5.24e-17,52;UBERON:0000955,1.59e-15,47;UBERON:0006238,1.59e-15,47;UBERON:0003080,2.06e-15,40;UBERON:0002780,3.23e-15,39;UBERON:0001890,3.23e-15,39;UBERON:0006240,3.23e-15,39;UBERON:0002616,5.31e-15,46;UBERON:0010371,1.81e-14,73;UBERON:0002346,6.67e-14,64;UBERON:0003075,6.67e-14,64;UBERON:0007284,6.67e-14,64;UBERON:0002020,1.90e-13,34;UBERON:0003056,1.99e-13,49;UBERON:0001017,2.57e-12,73;UBERON:0004121,5.16e-12,95;UBERON:0000924,5.16e-12,95;UBERON:0006601,5.16e-12,95;UBERON:0001016,2.89e-11,75;UBERON:0003528,1.07e-10,29;UBERON:0002791,1.07e-10,29;UBERON:0001893,1.07e-10,29;UBERON:0000956,3.75e-10,21;UBERON:0001869,3.75e-10,21;UBERON:0000203,3.75e-10,21;UBERON:0002619,5.93e-08,17;UBERON:0002021,1.04e-07,10;UBERON:0000411,1.04e-07,10;UBERON:0001950,1.04e-07,10|phase1_expression=0.960893082628764,1.74487703819681,3.18499467572675,4.83942738090928,5.50985302940982,2.68606835059024,2.56973904655078,0,0.140788722151667,0,0.513653904676515,0,0,0,0,0,0,0.157731082679119,0,0,2.38121212422995,0.0992909512008853,0.783599367416806,1.59992422793407,0.45881856213434,1.14846392823004,1.7230479846363,1.50829862880122,2.47030445293286,1.00812051903972,0.665191531965914,0,0,0,0.866554859253824,0.664938581433969,2.04169356262369,0,0,0,0,0,0,1.88845226963366,2.63580021170738,1.46837401729345,2.34717403304412,1.52617609466313,1.31811709640683,1.55543919259427,0.979904951377538,0,0,0,0,0.257259436035947,1.14613375975503,2.06268836910977,10.9250888864183,7.93486468908049,5.07065122804943,1.69422266034566,0.889294796111139,0,0.988866362566974,0,0.898800331555214,1.15265491596466,4.14758449233911,5.26523159493594,3.99617426567626,4.57041575046086,3.97563373712904,5.38959516545798,4.79227355091182,4.5960939330501,3.30347642998166,1.91531007127782,1.68967186581868,9.75958529203434,7.593474419,10.4182674111352,1.11673199600552,1.12552522006336,1.68078072554491,4.12480019663135,5.55249555116501,7.08317894136142,0,0.68014404096107,2.02905142091174,1.72084775396277,1.3599426674155,0.539703191637817,1.94932925234301,1.34408066129201,0.983110940922263,1.1930122580464,0.779358013808606,1.41335829804136,2.11265129665021,0,0,0,1.5154372870785,2.53359865475099,3.0331466700887,1.94112595522402,0,0.593768556259299,0.867426633830679,2.43572382649713,1.61430848079241,0.60289056221049,1.41106448562846,0.251333182659351,1.73036477414062,0.433798070759735,0,0.970601099684455,0.220841518460394,0.484875253135222,3.72783522436244,2.92780797011547,1.46612694769419,1.53274233125155,0,0,0,2.39665023047716,0.915001205637253,6.15706325353036,7.12679712788333,4.09144731728529,2.0778804455956,2.75810147215188,1.62942982160506,0.497627882440372,1.51633655060205,2.10441855886474,1.69156575851515,1.14951052216736,1.26043490863744,0.753524089178575,2.72145996605311,1.15302348256365,1.40552586839593,1.55222022443409,3.01795190105979,3.21480336285293,3.34307135911503,2.41115305670332,1.66828349535359,1.39300866608867,1.02891068203972,1.79130840136644,0,0,0,0.828503090142008,0.938104239924385,1.08037236876609,2.3674473558521,0.590292695242212,0.617068451549513,0.930135779001631,0.804820204198858,0.583826711835847,0.493679549740441,0.164167464079095,0.648550476366846,0.584799949701329,0.219550115291051,0.402619256281115,0.841159794256509,5.65975368086064,1.65209391491899,1.32225283331772,2.55945900642281,0.464473343720877,1.9330119198314,2.01683524623343,2.00140239460383,0.570676878337677,2.84717436926707,0.658795818896044,1.50801125280162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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=223254 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=F8VPU2 | |||
|association_with_transcript=-84bp_to_ENSMUST00000026635_5end | |||
|cluster_id=chr14:121434685..121434701,+ | |||
|description=CAGE_peak_4_at_Farp1_5end | |||
|id=chr14:121434685..121434701,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.14e-09!23;CL:0000337!1.14e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.96e-10,23;CL:0000337,3.96e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.87e-17!52;UBERON:0005068!8.87e-17!52;UBERON:0006241!8.87e-17!52;UBERON:0007135!8.87e-17!52;UBERON:0000955!1.21e-15!50;UBERON:0006238!1.21e-15!50;UBERON:0003080!3.26e-15!40;UBERON:0002616!3.85e-15!49;UBERON:0002780!4.96e-15!39;UBERON:0001890!4.96e-15!39;UBERON:0006240!4.96e-15!39;UBERON:0000033!5.88e-14!63;UBERON:0003056!2.00e-13!49;UBERON:0002020!2.35e-13!34;UBERON:0001017!4.66e-13!73;UBERON:0005743!4.66e-13!73;UBERON:0002346!3.25e-12!71;UBERON:0003075!3.25e-12!71;UBERON:0007284!3.25e-12!71;UBERON:0000073!6.01e-12!75;UBERON:0001016!6.01e-12!75;UBERON:0004121!2.02e-11!102;UBERON:0000924!2.02e-11!102;UBERON:0006601!2.02e-11!102;UBERON:0002791!1.01e-10!29;UBERON:0003528!1.01e-10!29;UBERON:0001893!1.01e-10!29;UBERON:0000956!5.97e-10!21;UBERON:0001869!5.97e-10!21;UBERON:0000203!5.97e-10!21;UBERON:0002619!7.37e-08!17;UBERON:0002021!2.23e-07!10;UBERON:0000411!2.23e-07!10;UBERON:0001950!2.23e-07!10;UBERON:0000468!5.09e-07!333;UBERON:0004111!8.13e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.93e-18,54;UBERON:0001049,5.24e-17,52;UBERON:0005068,5.24e-17,52;UBERON:0006241,5.24e-17,52;UBERON:0007135,5.24e-17,52;UBERON:0000955,1.59e-15,47;UBERON:0006238,1.59e-15,47;UBERON:0003080,2.06e-15,40;UBERON:0002780,3.23e-15,39;UBERON:0001890,3.23e-15,39;UBERON:0006240,3.23e-15,39;UBERON:0002616,5.31e-15,46;UBERON:0010371,1.81e-14,73;UBERON:0002346,6.67e-14,64;UBERON:0003075,6.67e-14,64;UBERON:0007284,6.67e-14,64;UBERON:0002020,1.90e-13,34;UBERON:0003056,1.99e-13,49;UBERON:0001017,2.57e-12,73;UBERON:0004121,5.16e-12,95;UBERON:0000924,5.16e-12,95;UBERON:0006601,5.16e-12,95;UBERON:0001016,2.89e-11,75;UBERON:0003528,1.07e-10,29;UBERON:0002791,1.07e-10,29;UBERON:0001893,1.07e-10,29;UBERON:0000956,3.75e-10,21;UBERON:0001869,3.75e-10,21;UBERON:0000203,3.75e-10,21;UBERON:0002619,5.93e-08,17;UBERON:0002021,1.04e-07,10;UBERON:0000411,1.04e-07,10;UBERON:0001950,1.04e-07,10 | |||
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| |||
|short_description=p4@Farp1 | |||
}} |
Latest revision as of 16:46, 25 September 2015
Short description: | p4@Farp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Farp1_5end |
Coexpression cluster: | NA |
Association with transcript: | -84bp_to_ENSMUST00000026635_5end |
EntrezGene: | Farp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.96e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.96e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.93e-18 | 54 |
neural tube | 5.24e-17 | 52 |
neural rod | 5.24e-17 | 52 |
future spinal cord | 5.24e-17 | 52 |
neural keel | 5.24e-17 | 52 |
brain | 1.59e-15 | 47 |
future brain | 1.59e-15 | 47 |
anterior neural tube | 2.06e-15 | 40 |
regional part of forebrain | 3.23e-15 | 39 |
forebrain | 3.23e-15 | 39 |
future forebrain | 3.23e-15 | 39 |
regional part of brain | 5.31e-15 | 46 |
ecto-epithelium | 1.81e-14 | 73 |
neurectoderm | 6.67e-14 | 64 |
neural plate | 6.67e-14 | 64 |
presumptive neural plate | 6.67e-14 | 64 |
gray matter | 1.90e-13 | 34 |
pre-chordal neural plate | 1.99e-13 | 49 |
central nervous system | 2.57e-12 | 73 |
ectoderm-derived structure | 5.16e-12 | 95 |
ectoderm | 5.16e-12 | 95 |
presumptive ectoderm | 5.16e-12 | 95 |
nervous system | 2.89e-11 | 75 |
brain grey matter | 1.07e-10 | 29 |
regional part of telencephalon | 1.07e-10 | 29 |
telencephalon | 1.07e-10 | 29 |
cerebral cortex | 3.75e-10 | 21 |
cerebral hemisphere | 3.75e-10 | 21 |
pallium | 3.75e-10 | 21 |
regional part of cerebral cortex | 5.93e-08 | 17 |
occipital lobe | 1.04e-07 | 10 |
visual cortex | 1.04e-07 | 10 |
neocortex | 1.04e-07 | 10 |