FFCP PHASE1:Hg19::chr9:95726486..95726502,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr9:95726486..95726502,+
|short_description=p4@FGD3
|description=CAGE_peak_4_at_FGD3_5end
|association_with_transcript=98bp_to_ENST00000468206_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=89846 | |EntrezGene=89846 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16027 | |HGNC=16027 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=98bp_to_ENST00000468206_5end | |||
|cluster_id=chr9:95726486..95726502,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_FGD3_5end | |||
|id=chr9:95726486..95726502,+ | |||
|ontology_enrichment_celltype=CL:0000084!5.94e-35!25;CL:0000827!5.94e-35!25;CL:0000791!3.30e-32!18;CL:0000789!3.30e-32!18;CL:0002420!3.30e-32!18;CL:0002419!3.30e-32!18;CL:0000790!3.30e-32!18;CL:0000838!1.67e-27!52;CL:0000542!8.67e-27!53;CL:0000051!8.67e-27!53;CL:0000738!1.37e-21!140;CL:0000625!3.84e-21!11;CL:0000988!1.39e-19!182;CL:0000037!5.67e-19!172;CL:0000566!5.67e-19!172;CL:0002087!1.34e-18!119;CL:0002031!7.62e-18!124;CL:0002032!2.08e-16!165;CL:0000837!2.08e-16!165;CL:0000624!1.18e-11!6;CL:0000080!3.97e-10!6;CL:0000623!3.51e-07!3;CL:0000825!3.51e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.99e-56;18!CL:0000789;2.99e-56;18!CL:0002419;2.99e-56;18!CL:0000084;7.05e-44;25!CL:0000625;5.45e-40;11!CL:0000624;2.39e-21;6!CL:0000542;6.55e-14;53!CL:0000623;1.74e-12;3!CL:0000226;2.15e-11;3!CL:0000842;2.15e-11;3!CL:0000898;2.18e-11;3!CL:0000815;5.74e-08;2!CL:0000792;5.74e-08;2!CL:0002677;5.74e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.71e-56,18;CL:0000789,2.71e-56,18;CL:0002420,2.71e-56,18;CL:0002419,2.71e-56,18;CL:0000790,2.71e-56,18;CL:0000084,7.86e-44,25;CL:0000827,7.86e-44,25;CL:0000625,4.90e-40,11;CL:0000838,1.90e-26,52;CL:0000542,7.62e-26,53;CL:0000051,7.62e-26,53;CL:0000624,2.40e-21,6;CL:0002087,2.75e-16,115;CL:0000738,2.84e-15,136;CL:0000623,1.39e-12,3;CL:0000825,1.39e-12,3;CL:0002031,1.65e-11,120;CL:0000226,1.83e-11,3;CL:0000842,1.83e-11,3;CL:0000898,2.11e-11,3;CL:0000037,4.83e-11,168;CL:0000988,3.90e-10,177;CL:0002032,5.08e-08,161;CL:0000837,5.08e-08,161;CL:0000815,5.74e-08,2;CL:0000792,5.74e-08,2;CL:0002677,5.74e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;2.99e-56;18!CL:0000051;6.55e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.12e-24!15;UBERON:0000179!2.12e-24!15;UBERON:0000463!2.12e-24!15;UBERON:0002390!9.49e-11!102;UBERON:0003061!9.49e-11!102;UBERON:0002193!1.39e-10!112;UBERON:0004177!5.87e-09!7;UBERON:0002370!7.28e-08!4;UBERON:0005058!7.28e-08!4;UBERON:0009113!7.28e-08!4;UBERON:0003295!7.28e-08!4;UBERON:0005562!7.28e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.77e-26;15!UBERON:0000179;2.77e-26;15!UBERON:0000463;2.77e-26;15!UBERON:0002390;1.49e-14;32!UBERON:0002193;1.12e-09;42!UBERON:0002370;1.61e-08;2!UBERON:0005058;1.61e-08;2!UBERON:0009113;1.61e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.33e-26,15;UBERON:0000179,2.33e-26,15;UBERON:0000463,2.33e-26,15;UBERON:0002370,4.97e-09,4;UBERON:0005058,4.97e-09,4;UBERON:0009113,4.97e-09,4;UBERON:0003295,4.97e-09,4;UBERON:0005562,4.97e-09,4 | |||
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| ||
|short_description=p4@FGD3 | |||
}} | }} |
Latest revision as of 07:56, 18 September 2015
Short description: | p4@FGD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_FGD3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 98bp_to_ENST00000468206_5end |
EntrezGene: | FGD3 |
HGNC: | 16027 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.71e-56 | 18 |
alpha-beta T cell | 2.71e-56 | 18 |
immature T cell | 2.71e-56 | 18 |
mature T cell | 2.71e-56 | 18 |
immature alpha-beta T cell | 2.71e-56 | 18 |
T cell | 7.86e-44 | 25 |
pro-T cell | 7.86e-44 | 25 |
CD8-positive, alpha-beta T cell | 4.90e-40 | 11 |
lymphoid lineage restricted progenitor cell | 1.90e-26 | 52 |
lymphocyte | 7.62e-26 | 53 |
common lymphoid progenitor | 7.62e-26 | 53 |
CD4-positive, alpha-beta T cell | 2.40e-21 | 6 |
nongranular leukocyte | 2.75e-16 | 115 |
leukocyte | 2.84e-15 | 136 |
natural killer cell | 1.39e-12 | 3 |
pro-NK cell | 1.39e-12 | 3 |
hematopoietic lineage restricted progenitor cell | 1.65e-11 | 120 |
single nucleate cell | 1.83e-11 | 3 |
mononuclear cell | 1.83e-11 | 3 |
naive T cell | 2.11e-11 | 3 |
hematopoietic stem cell | 4.83e-11 | 168 |
hematopoietic cell | 3.90e-10 | 177 |
hematopoietic oligopotent progenitor cell | 5.08e-08 | 161 |
hematopoietic multipotent progenitor cell | 5.08e-08 | 161 |
regulatory T cell | 5.74e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.74e-08 | 2 |
naive regulatory T cell | 5.74e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 2.33e-26 | 15 |
haemolymphatic fluid | 2.33e-26 | 15 |
organism substance | 2.33e-26 | 15 |
thymus | 4.97e-09 | 4 |
hemolymphoid system gland | 4.97e-09 | 4 |
thymic region | 4.97e-09 | 4 |
pharyngeal gland | 4.97e-09 | 4 |
thymus primordium | 4.97e-09 | 4 |