FFCP PHASE1:Mm9::chr13:51196179..51196302,+: Difference between revisions
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{{FFCP|EntrezGene=20729|HGNC=|MCL_coexpression_id=22|UniProt=Q61142|association_with_transcript=0bp_to_ENSMUST00000057478,NM_146043,uc007qly.1_5end|description=CAGE_peak_1_at_Spin1_5end|id=chr13:51196179..51196302,+|ontology_enrichment_celltype=CL:0000117!1.23e-14!23;CL:0000337!1.23e-14!23;CL:0000540!5.87e-12!33;CL:0000047!5.87e-12!33;CL:0000031!5.87e-12!33;CL:0000404!5.87e-12!33;CL:0000393!1.91e-09!39;CL:0000211!1.91e-09!39;CL:0002321!2.41e-08!70;CL:0000220!2.41e-08!70;CL:0000221!3.42e-08!44;CL:0000133!3.42e-08!44;CL:0002319!8.49e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,1.23e-14,23;CL:0000337,1.23e-14,23;CL:0000540,5.87e-12,33;CL:0000047,5.87e-12,33;CL:0000031,5.87e-12,33;CL:0000404,5.87e-12,33;CL:0000393,1.91e-09,39;CL:0000211,1.91e-09,39;CL:0002321,2.41e-08,70;CL:0000221,3.42e-08,44;CL:0000133,3.42e-08,44;CL:0002319,8.49e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!7.63e-15!34;UBERON:0001017!7.29e-14!73;UBERON:0005743!7.29e-14!73;UBERON:0000073!1.75e-13!75;UBERON:0001016!1.75e-13!75;UBERON:0001049!1.87e-13!52;UBERON:0005068!1.87e-13!52;UBERON:0006241!1.87e-13!52;UBERON:0007135!1.87e-13!52;UBERON:0002346!5.24e-13!71;UBERON:0003075!5.24e-13!71;UBERON:0007284!5.24e-13!71;UBERON:0003080!4.03e-12!40;UBERON:0003056!4.22e-12!49;UBERON:0002780!7.89e-12!39;UBERON:0001890!7.89e-12!39;UBERON:0006240!7.89e-12!39;UBERON:0002616!8.15e-12!49;UBERON:0002791!8.45e-12!29;UBERON:0003528!8.45e-12!29;UBERON:0001893!8.45e-12!29;UBERON:0000033!1.20e-11!63;UBERON:0004121!1.25e-11!102;UBERON:0000924!1.25e-11!102;UBERON:0006601!1.25e-11!102;UBERON:0000955!1.57e-11!50;UBERON:0006238!1.57e-11!50;UBERON:0000956!8.81e-08!21;UBERON:0001869!8.81e-08!21;UBERON:0000203!8.81e-08!21;UBERON:0000153!1.26e-07!94;UBERON:0007811!4.03e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.63e-15,34;UBERON:0000073,1.18e-14,54;UBERON:0001017,7.29e-14,73;UBERON:0001016,1.75e-13,75;UBERON:0001049,1.87e-13,52;UBERON:0005068,1.87e-13,52;UBERON:0006241,1.87e-13,52;UBERON:0007135,1.87e-13,52;UBERON:0002346,2.29e-13,64;UBERON:0003075,2.29e-13,64;UBERON:0007284,2.29e-13,64;UBERON:0003080,4.03e-12,40;UBERON:0003056,4.22e-12,49;UBERON:0002780,7.89e-12,39;UBERON:0001890,7.89e-12,39;UBERON:0006240,7.89e-12,39;UBERON:0003528,8.45e-12,29;UBERON:0002791,8.45e-12,29;UBERON:0001893,8.45e-12,29;UBERON:0004121,1.25e-11,95;UBERON:0000924,1.25e-11,95;UBERON:0006601,1.25e-11,95;UBERON:0010371,2.14e-11,73;UBERON:0002616,8.63e-11,46;UBERON:0000955,1.63e-10,47;UBERON:0006238,1.63e-10,47;UBERON:0010314,6.06e-09,92;UBERON:0000956,8.81e-08,21;UBERON:0001869,8.81e-08,21;UBERON:0000203,8.81e-08,21|phase1_expression=22.2606897475664,32.4547129104606,31.8499467572675,22.6848158480123,18.5331420080148,18.6345991822198,12.1478573109673,9.68424925811822,16.3314917695933,11.0010327371337,7.70480857014772,9.49288692044503,9.0736386863539,8.13009742496676,4.99664642723494,4.04950534779652,4.19737126876888,12.9339487796877,10.8320402548534,9.76096199135469,12.7564935226605,10.5248408272938,13.0599894569468,12.9593862462659,16.9762867989706,23.5435105287158,19.8150518233174,19.39241094173,14.0617330397717,17.1380488236753,11.5299865540758,3.17515336729816,2.46025915033828,0,10.9763615505484,13.2987716286794,12.4543307320045,18.4153917524239,15.626706890476,17.7998072951091,15.2940186888064,19.8083190637949,18.934903768215,8.68688044031483,11.3542162965856,15.9685674380663,10.9534788208725,9.59310688073965,10.9843091367236,14.1933826324227,12.4587915246573,21.5628846547457,23.3217822420254,17.4086914082723,12.0993767691287,14.663787854049,11.747871037489,13.9231464914909,44.3073049282519,34.9134046319542,54.5095007015314,13.5537812827653,10.6715375533337,4.04954872776629,0,4.9733608046227,6.89080254192331,10.7581125490035,49.7710139080693,41.041805252834,41.6443423475736,39.4198358477249,32.025938437984,38.8295833511404,46.1016715597717,48.7185956903311,16.5173821499083,31.9218345212969,28.8780282521738,36.2687291258033,54.9840738050482,45.8403766089949,27.080750903134,28.138130501584,24.142123148736,34.1769159149455,40.4335573469452,41.7534758648673,14.5394291199713,13.1494514585807,15.6526823898906,18.0689014166091,16.319312008986,14.5719861742211,14.2950811838487,10.3046184032387,12.3591089715942,10.0553890321054,9.35229616570328,15.546941278455,24.0842247818124,21.815501160434,28.028576367731,63.9960032837998,18.185247444942,15.9616715249312,22.2430755806505,16.2141109201065,10.3575153458869,13.0629082377046,19.6038419245734,10.0473607843007,17.0655467969483,13.4143150091834,17.4031286560843,19.2269884734403,21.2587672251562,6.2177723475562,9.73071607144862,11.9707468961083,9.71702681225732,7.27312879702833,13.0474232852686,11.1256702864388,18.2218634927706,9.45191104271788,11.981512450592,10.1983464268879,13.5965142968179,20.2217363196511,17.3850229071078,52.0209017747259,26.421296669226,24.0372529890511,22.4411088124325,24.1739481970959,27.3947888757351,12.3162900903992,11.1198013710817,8.207232379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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20729 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q61142 | |||
|association_with_transcript=0bp_to_ENSMUST00000057478,NM_146043,uc007qly.1_5end | |||
|cluster_id=chr13:51196179..51196302,+ | |||
|description=CAGE_peak_1_at_Spin1_5end | |||
|id=chr13:51196179..51196302,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.23e-14!23;CL:0000337!1.23e-14!23;CL:0000540!5.87e-12!33;CL:0000047!5.87e-12!33;CL:0000031!5.87e-12!33;CL:0000404!5.87e-12!33;CL:0000393!1.91e-09!39;CL:0000211!1.91e-09!39;CL:0002321!2.41e-08!70;CL:0000220!2.41e-08!70;CL:0000221!3.42e-08!44;CL:0000133!3.42e-08!44;CL:0002319!8.49e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.23e-14,23;CL:0000337,1.23e-14,23;CL:0000540,5.87e-12,33;CL:0000047,5.87e-12,33;CL:0000031,5.87e-12,33;CL:0000404,5.87e-12,33;CL:0000393,1.91e-09,39;CL:0000211,1.91e-09,39;CL:0002321,2.41e-08,70;CL:0000221,3.42e-08,44;CL:0000133,3.42e-08,44;CL:0002319,8.49e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.63e-15!34;UBERON:0001017!7.29e-14!73;UBERON:0005743!7.29e-14!73;UBERON:0000073!1.75e-13!75;UBERON:0001016!1.75e-13!75;UBERON:0001049!1.87e-13!52;UBERON:0005068!1.87e-13!52;UBERON:0006241!1.87e-13!52;UBERON:0007135!1.87e-13!52;UBERON:0002346!5.24e-13!71;UBERON:0003075!5.24e-13!71;UBERON:0007284!5.24e-13!71;UBERON:0003080!4.03e-12!40;UBERON:0003056!4.22e-12!49;UBERON:0002780!7.89e-12!39;UBERON:0001890!7.89e-12!39;UBERON:0006240!7.89e-12!39;UBERON:0002616!8.15e-12!49;UBERON:0002791!8.45e-12!29;UBERON:0003528!8.45e-12!29;UBERON:0001893!8.45e-12!29;UBERON:0000033!1.20e-11!63;UBERON:0004121!1.25e-11!102;UBERON:0000924!1.25e-11!102;UBERON:0006601!1.25e-11!102;UBERON:0000955!1.57e-11!50;UBERON:0006238!1.57e-11!50;UBERON:0000956!8.81e-08!21;UBERON:0001869!8.81e-08!21;UBERON:0000203!8.81e-08!21;UBERON:0000153!1.26e-07!94;UBERON:0007811!4.03e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.63e-15,34;UBERON:0000073,1.18e-14,54;UBERON:0001017,7.29e-14,73;UBERON:0001016,1.75e-13,75;UBERON:0001049,1.87e-13,52;UBERON:0005068,1.87e-13,52;UBERON:0006241,1.87e-13,52;UBERON:0007135,1.87e-13,52;UBERON:0002346,2.29e-13,64;UBERON:0003075,2.29e-13,64;UBERON:0007284,2.29e-13,64;UBERON:0003080,4.03e-12,40;UBERON:0003056,4.22e-12,49;UBERON:0002780,7.89e-12,39;UBERON:0001890,7.89e-12,39;UBERON:0006240,7.89e-12,39;UBERON:0003528,8.45e-12,29;UBERON:0002791,8.45e-12,29;UBERON:0001893,8.45e-12,29;UBERON:0004121,1.25e-11,95;UBERON:0000924,1.25e-11,95;UBERON:0006601,1.25e-11,95;UBERON:0010371,2.14e-11,73;UBERON:0002616,8.63e-11,46;UBERON:0000955,1.63e-10,47;UBERON:0006238,1.63e-10,47;UBERON:0010314,6.06e-09,92;UBERON:0000956,8.81e-08,21;UBERON:0001869,8.81e-08,21;UBERON:0000203,8.81e-08,21 | |||
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| |||
|short_description=p1@Spin1 | |||
}} |
Latest revision as of 17:15, 1 October 2015
Short description: | p1@Spin1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Spin1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000057478, NM_146043, uc007qly.1_5end |
EntrezGene: | Spin1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.23e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.23e-14 | 23 |
neuron | 5.87e-12 | 33 |
neuronal stem cell | 5.87e-12 | 33 |
neuroblast | 5.87e-12 | 33 |
electrically signaling cell | 5.87e-12 | 33 |
electrically responsive cell | 1.91e-09 | 39 |
electrically active cell | 1.91e-09 | 39 |
embryonic cell | 2.41e-08 | 70 |
ectodermal cell | 3.42e-08 | 44 |
neurectodermal cell | 3.42e-08 | 44 |
neural cell | 8.49e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
gray matter | 7.63e-15 | 34 |
regional part of nervous system | 1.18e-14 | 54 |
central nervous system | 7.29e-14 | 73 |
nervous system | 1.75e-13 | 75 |
neural tube | 1.87e-13 | 52 |
neural rod | 1.87e-13 | 52 |
future spinal cord | 1.87e-13 | 52 |
neural keel | 1.87e-13 | 52 |
neurectoderm | 2.29e-13 | 64 |
neural plate | 2.29e-13 | 64 |
presumptive neural plate | 2.29e-13 | 64 |
anterior neural tube | 4.03e-12 | 40 |
pre-chordal neural plate | 4.22e-12 | 49 |
regional part of forebrain | 7.89e-12 | 39 |
forebrain | 7.89e-12 | 39 |
future forebrain | 7.89e-12 | 39 |
brain grey matter | 8.45e-12 | 29 |
regional part of telencephalon | 8.45e-12 | 29 |
telencephalon | 8.45e-12 | 29 |
ectoderm-derived structure | 1.25e-11 | 95 |
ectoderm | 1.25e-11 | 95 |
presumptive ectoderm | 1.25e-11 | 95 |
ecto-epithelium | 2.14e-11 | 73 |
regional part of brain | 8.63e-11 | 46 |
brain | 1.63e-10 | 47 |
future brain | 1.63e-10 | 47 |
structure with developmental contribution from neural crest | 6.06e-09 | 92 |
cerebral cortex | 8.81e-08 | 21 |
cerebral hemisphere | 8.81e-08 | 21 |
pallium | 8.81e-08 | 21 |