FFCP PHASE1:Mm9::chr13:107812463..107812474,-: Difference between revisions
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{{FFCP|EntrezGene=16563|HGNC=|MCL_coexpression_id=60|UniProt=E0CZ72|association_with_transcript=-257bp_to_ENSMUST00000159772_5end|description=CAGE_peak_3_at_Kif2a_5end|id=chr13:107812463..107812474,-|ontology_enrichment_celltype=CL:0000117!9.18e-13!23;CL:0000337!9.18e-13!23;CL:0000540!1.49e-08!33;CL:0000047!1.49e-08!33;CL:0000031!1.49e-08!33;CL:0000404!1.49e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.94e-13,23;CL:0000337,3.94e-13,23;CL:0000540,3.56e-08,33;CL:0000047,3.56e-08,33;CL:0000031,3.56e-08,33;CL:0000404,3.56e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!4.60e-13!71;UBERON:0003075!4.60e-13!71;UBERON:0007284!4.60e-13!71;UBERON:0002020!5.25e-13!34;UBERON:0001049!8.34e-13!52;UBERON:0005068!8.34e-13!52;UBERON:0006241!8.34e-13!52;UBERON:0007135!8.34e-13!52;UBERON:0001017!2.53e-11!73;UBERON:0005743!2.53e-11!73;UBERON:0000073!3.47e-11!75;UBERON:0001016!3.47e-11!75;UBERON:0000955!1.37e-10!50;UBERON:0006238!1.37e-10!50;UBERON:0002616!4.86e-10!49;UBERON:0004121!6.19e-10!102;UBERON:0000924!6.19e-10!102;UBERON:0006601!6.19e-10!102;UBERON:0002791!6.20e-10!29;UBERON:0003528!6.20e-10!29;UBERON:0001893!6.20e-10!29;UBERON:0003056!7.69e-10!49;UBERON:0000033!1.41e-09!63;UBERON:0003080!3.79e-09!40;UBERON:0002780!4.43e-09!39;UBERON:0001890!4.43e-09!39;UBERON:0006240!4.43e-09!39|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.32e-13,64;UBERON:0003075,2.32e-13,64;UBERON:0007284,2.32e-13,64;UBERON:0002020,3.31e-13,34;UBERON:0000073,6.52e-13,54;UBERON:0001049,7.16e-13,52;UBERON:0005068,7.16e-13,52;UBERON:0006241,7.16e-13,52;UBERON:0007135,7.16e-13,52;UBERON:0010371,2.58e-11,73;UBERON:0001017,4.05e-11,73;UBERON:0001016,5.49e-11,75;UBERON:0000955,4.58e-10,47;UBERON:0006238,4.58e-10,47;UBERON:0003528,4.76e-10,29;UBERON:0002791,4.76e-10,29;UBERON:0001893,4.76e-10,29;UBERON:0003056,7.37e-10,49;UBERON:0002616,1.66e-09,46;UBERON:0010314,1.67e-09,92;UBERON:0003080,2.89e-09,40;UBERON:0004121,3.15e-09,95;UBERON:0000924,3.15e-09,95;UBERON:0006601,3.15e-09,95;UBERON:0002780,3.41e-09,39;UBERON:0001890,3.41e-09,39;UBERON:0006240,3.41e-09,39|phase1_expression=1.28119077683835,0,0.909998478779072,0.30246421130683,1.00179145989269,0.503637815735669,0.934450562382103,0.129123323441576,0.563154888606667,0.468129052643987,0.856089841127525,0.558405112967355,0.513602189793617,0.34968160967599,3.33109761815663,1.41732687172878,4.19737126876888,0.315462165358238,1.09691546884591,0.42438965179803,2.97651515528744,1.19149141441062,0,0.639969691173627,0.22940928106717,1.14846392823004,0.430761996159075,0.430942465371778,0.570070258369122,1.26015064879965,0.443461021310609,0.635030673459631,0,0,0.577703239502549,1.16364251750945,0.408338712524738,2.51118978442145,0.7813353445238,3.14114246384279,0.588231488031014,3.41522742479223,1.94204141212461,0.629484089877886,0.506884656097573,1.10128051297009,3.9119567217402,0.872100625521786,0.659058548203415,0.58328969722285,1.1198913730029,1.43752564364972,0.671130424230945,0.725362142011344,1.00828139742739,1.28629718017973,1.14613375975503,0.515672092277442,8.6996078169627,5.28990979272033,8.23980824558033,1.35537812827653,0.889294796111139,0.449949858640699,0.988866362566974,0,0.299600110518405,0.384218305321555,5.91030790158323,2.70011876663381,5.46844899513593,9.71213346972932,5.52171352379034,5.26710436624302,4.60058260887535,4.5960939330501,1.10115880999389,4.08599481872601,3.37934373163736,6.72620067423989,6.03818447775904,6.77187381723788,4.18774498502071,3.93933827022176,2.13917546887534,9.1334861496837,9.11178757114259,4.47358669980721,1.36307147999731,1.73814588245607,0.869593466105033,0,0,1.07940638327563,0,0.448026887097336,1.40444420131752,0.852151612890289,1.55871602761721,1.41335829804136,0.985903938436763,0,2.54805239706646,0,1.08245520505607,2.02687892380079,1.51657333504435,1.02765491747154,1.29468941823586,1.63286352971307,1.21439728736295,1.21786191324856,2.30615497256059,1.3565037649736,2.58695155698551,1.38233250462643,0.988779870937496,0.578397427679647,1.76922110389975,1.61766849947409,1.98757366614354,0.969750506270444,1.86391761218122,1.17112318804619,2.09446706813455,0.510914110417183,1.07833612055328,0.599902730993408,1.77898317902291,1.9472783122627,3.20250421973039,7.03664371832041,2.25971616249959,3.3243009452943,1.66230435647648,2.92034273521964,2.13862664085664,1.36847667671102,0,0.631325567659422,1.69156575851515,1.83921683546778,3.60124259610698,3.91832526372859,4.01415344992834,2.0498195245576,3.93547243150861,0.776110112217047,2.80238390812695,3.21480336285293,2.28736461413134,2.41115305670332,0.834141747676794,1.0447564995665,1.4404749548556,1.79130840136644,2.1066395619397,1.02939162845886,0.568326998791185,3.10688658803253,0.703578179943289,1.44049649168812,2.13070262026689,3.73852040320067,1.3884040159864,0.930135779001631,1.87791380979733,1.75148013550754,1.31647879930784,1.64167464079095,1.78351381000883,0.877199924551994,1.09775057645525,1.20785776884335,2.3131894342054,7.1004182541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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16563 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=E0CZ72 | |||
|association_with_transcript=-257bp_to_ENSMUST00000159772_5end | |||
|cluster_id=chr13:107812463..107812474,- | |||
|description=CAGE_peak_3_at_Kif2a_5end | |||
|id=chr13:107812463..107812474,- | |||
|ontology_enrichment_celltype=CL:0000117!9.18e-13!23;CL:0000337!9.18e-13!23;CL:0000540!1.49e-08!33;CL:0000047!1.49e-08!33;CL:0000031!1.49e-08!33;CL:0000404!1.49e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.94e-13,23;CL:0000337,3.94e-13,23;CL:0000540,3.56e-08,33;CL:0000047,3.56e-08,33;CL:0000031,3.56e-08,33;CL:0000404,3.56e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!4.60e-13!71;UBERON:0003075!4.60e-13!71;UBERON:0007284!4.60e-13!71;UBERON:0002020!5.25e-13!34;UBERON:0001049!8.34e-13!52;UBERON:0005068!8.34e-13!52;UBERON:0006241!8.34e-13!52;UBERON:0007135!8.34e-13!52;UBERON:0001017!2.53e-11!73;UBERON:0005743!2.53e-11!73;UBERON:0000073!3.47e-11!75;UBERON:0001016!3.47e-11!75;UBERON:0000955!1.37e-10!50;UBERON:0006238!1.37e-10!50;UBERON:0002616!4.86e-10!49;UBERON:0004121!6.19e-10!102;UBERON:0000924!6.19e-10!102;UBERON:0006601!6.19e-10!102;UBERON:0002791!6.20e-10!29;UBERON:0003528!6.20e-10!29;UBERON:0001893!6.20e-10!29;UBERON:0003056!7.69e-10!49;UBERON:0000033!1.41e-09!63;UBERON:0003080!3.79e-09!40;UBERON:0002780!4.43e-09!39;UBERON:0001890!4.43e-09!39;UBERON:0006240!4.43e-09!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.32e-13,64;UBERON:0003075,2.32e-13,64;UBERON:0007284,2.32e-13,64;UBERON:0002020,3.31e-13,34;UBERON:0000073,6.52e-13,54;UBERON:0001049,7.16e-13,52;UBERON:0005068,7.16e-13,52;UBERON:0006241,7.16e-13,52;UBERON:0007135,7.16e-13,52;UBERON:0010371,2.58e-11,73;UBERON:0001017,4.05e-11,73;UBERON:0001016,5.49e-11,75;UBERON:0000955,4.58e-10,47;UBERON:0006238,4.58e-10,47;UBERON:0003528,4.76e-10,29;UBERON:0002791,4.76e-10,29;UBERON:0001893,4.76e-10,29;UBERON:0003056,7.37e-10,49;UBERON:0002616,1.66e-09,46;UBERON:0010314,1.67e-09,92;UBERON:0003080,2.89e-09,40;UBERON:0004121,3.15e-09,95;UBERON:0000924,3.15e-09,95;UBERON:0006601,3.15e-09,95;UBERON:0002780,3.41e-09,39;UBERON:0001890,3.41e-09,39;UBERON:0006240,3.41e-09,39 | |||
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| |||
|short_description=p3@Kif2a | |||
}} |
Latest revision as of 02:08, 27 September 2015
Short description: | p3@Kif2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Kif2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -257bp_to_ENSMUST00000159772_5end |
EntrezGene: | Kif2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.94e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.94e-13 | 23 |
neuron | 3.56e-08 | 33 |
neuronal stem cell | 3.56e-08 | 33 |
neuroblast | 3.56e-08 | 33 |
electrically signaling cell | 3.56e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.32e-13 | 64 |
neural plate | 2.32e-13 | 64 |
presumptive neural plate | 2.32e-13 | 64 |
gray matter | 3.31e-13 | 34 |
regional part of nervous system | 6.52e-13 | 54 |
neural tube | 7.16e-13 | 52 |
neural rod | 7.16e-13 | 52 |
future spinal cord | 7.16e-13 | 52 |
neural keel | 7.16e-13 | 52 |
ecto-epithelium | 2.58e-11 | 73 |
central nervous system | 4.05e-11 | 73 |
nervous system | 5.49e-11 | 75 |
brain | 4.58e-10 | 47 |
future brain | 4.58e-10 | 47 |
brain grey matter | 4.76e-10 | 29 |
regional part of telencephalon | 4.76e-10 | 29 |
telencephalon | 4.76e-10 | 29 |
pre-chordal neural plate | 7.37e-10 | 49 |
regional part of brain | 1.66e-09 | 46 |
structure with developmental contribution from neural crest | 1.67e-09 | 92 |
anterior neural tube | 2.89e-09 | 40 |
ectoderm-derived structure | 3.15e-09 | 95 |
ectoderm | 3.15e-09 | 95 |
presumptive ectoderm | 3.15e-09 | 95 |
regional part of forebrain | 3.41e-09 | 39 |
forebrain | 3.41e-09 | 39 |
future forebrain | 3.41e-09 | 39 |