FFCP PHASE1:Mm9::chr12:72149325..72149343,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=238247|HGNC=|MCL_coexpression_id=1|UniProt=E9Q9V1|association_with_transcript=0bp_to_ENSMUST00000135709_5end|description=CAGE_peak_2_at_Arid4a_5end|id=chr12:72149325..72149343,+|ontology_enrichment_celltype=CL:0000117!2.59e-12!23;CL:0000337!2.59e-12!23;CL:0000540!1.48e-11!33;CL:0000047!1.48e-11!33;CL:0000031!1.48e-11!33;CL:0000404!1.48e-11!33;CL:0002319!3.43e-11!43;CL:0000221!4.80e-11!44;CL:0000133!4.80e-11!44;CL:0000393!1.89e-10!39;CL:0000211!1.89e-10!39;CL:0000055!8.75e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.31e-17,23;CL:0000337,4.31e-17,23;CL:0000540,2.97e-13,33;CL:0000047,2.97e-13,33;CL:0000031,2.97e-13,33;CL:0000404,2.97e-13,33;CL:0000393,2.94e-11,39;CL:0000211,2.94e-11,39;CL:0002319,3.95e-10,43;CL:0000221,1.10e-09,44;CL:0000133,1.10e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.33e-31!73;UBERON:0005743!7.33e-31!73;UBERON:0000073!1.94e-30!75;UBERON:0001016!1.94e-30!75;UBERON:0002346!4.81e-27!71;UBERON:0003075!4.81e-27!71;UBERON:0007284!4.81e-27!71;UBERON:0001049!1.30e-26!52;UBERON:0005068!1.30e-26!52;UBERON:0006241!1.30e-26!52;UBERON:0007135!1.30e-26!52;UBERON:0000955!3.57e-26!50;UBERON:0006238!3.57e-26!50;UBERON:0002616!2.21e-25!49;UBERON:0004121!7.23e-25!102;UBERON:0000924!7.23e-25!102;UBERON:0006601!7.23e-25!102;UBERON:0000033!1.77e-24!63;UBERON:0003056!9.91e-22!49;UBERON:0003080!8.66e-21!40;UBERON:0002780!4.06e-20!39;UBERON:0001890!4.06e-20!39;UBERON:0006240!4.06e-20!39;UBERON:0002020!3.53e-18!34;UBERON:0002791!9.08e-16!29;UBERON:0003528!9.08e-16!29;UBERON:0001893!9.08e-16!29;UBERON:0007811!1.56e-15!86;UBERON:0000153!8.26e-15!94;UBERON:0000956!4.28e-11!21;UBERON:0001869!4.28e-11!21;UBERON:0000203!4.28e-11!21;UBERON:0002619!2.62e-09!17;UBERON:0002021!1.10e-07!10;UBERON:0000411!1.10e-07!10;UBERON:0001950!1.10e-07!10;UBERON:0000025!2.51e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.10e-35,54;UBERON:0001017,5.50e-35,73;UBERON:0001016,1.50e-34,75;UBERON:0001049,2.35e-33,52;UBERON:0005068,2.35e-33,52;UBERON:0006241,2.35e-33,52;UBERON:0007135,2.35e-33,52;UBERON:0002346,2.76e-31,64;UBERON:0003075,2.76e-31,64;UBERON:0007284,2.76e-31,64;UBERON:0000955,7.40e-30,47;UBERON:0006238,7.40e-30,47;UBERON:0004121,6.40e-29,95;UBERON:0000924,6.40e-29,95;UBERON:0006601,6.40e-29,95;UBERON:0002616,9.07e-29,46;UBERON:0003056,3.30e-27,49;UBERON:0003080,5.10e-27,40;UBERON:0002780,4.60e-26,39;UBERON:0001890,4.60e-26,39;UBERON:0006240,4.60e-26,39;UBERON:0010371,6.75e-25,73;UBERON:0002020,2.21e-24,34;UBERON:0003528,6.72e-21,29;UBERON:0002791,6.72e-21,29;UBERON:0001893,6.72e-21,29;UBERON:0010314,2.42e-19,92;UBERON:0000956,3.34e-14,21;UBERON:0001869,3.34e-14,21;UBERON:0000203,3.34e-14,21;UBERON:0002619,1.25e-11,17;UBERON:0002021,2.06e-10,10;UBERON:0000411,2.06e-10,10;UBERON:0001950,2.06e-10,10;UBERON:0002420,6.26e-08,8;UBERON:0007245,6.26e-08,8;UBERON:0010009,6.26e-08,8;UBERON:0010011,6.26e-08,8;UBERON:0000454,6.26e-08,8;UBERON:0000025,1.11e-07,114;UBERON:0003076,9.00e-07,12;UBERON:0003057,9.00e-07,12|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.645616617207881,0,0,0,0,0,0.34968160967599,0,0.202475267389826,0,0.473193248037357,1.23402990245165,0.42438965179803,4.08207792725135,2.48227378002213,2.35079810225042,0.159992422793407,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0.782391344348039,0.65407546914134,0.439372365468944,0.388859798148567,0.55994568650145,1.43752564364972,0.335565212115473,0,0,0.514518872071894,1.14613375975503,1.03134418455488,3.64169629547276,3.70293685490423,3.80298842103708,0,0,0,0,0,0.599200221036809,1.15265491596466,2.17748185847803,2.29510095163874,2.52389953621658,1.71390590642282,3.3130281142742,3.79721477566358,3.45043695665651,3.67687514644008,12.1127469099328,9.70423769447427,10.1380311949121,3.03338461779446,4.20843160571084,7.29278718779464,5.862842979029,14.6318278608237,11.6126668310376,7.95497180778903,11.6744778255264,6.33758115806022,0.075726193333184,1.36028808192214,0.579728977403356,0,0,0,0,0,0.421333260395256,0.511290967734173,0,0.70667914902068,0.422530259330042,0,0,0,0,0,0,0.91347103775248,2.07150306917737,0.890652834388949,1.04091196059682,0.608930956624282,0.691846491768175,2.11011696773672,0.587943535678524,0.753999547978053,0,0.433798070759735,0,0.161766849947409,0,0.484875253135222,0,15.2246014446005,13.1951425292477,0,0,0,0,11.9832511523858,16.4700217014706,19.2251158732683,18.5992022605736,18.6672283851141,11.8439185398949,11.1946471516753,0.101839363850316,0.124406970610093,0,1.89397670297827,0,0.689706313300419,0.720248519221397,1.9591626318643,1.56483948048054,2.8185018462667,2.15513966487376,3.62184719034622,0,0.567318240503458,0.175951124163949,0.43839146485515,0.834141747676794,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0,1.08037236876609,0.710234206755631,0.196764231747404,0.771335564436891,0.465067889500816,0.268273401399619,0,0.493679549740441,0.32833492815819,0.162137619091711,0,0,0.268412837520744,12.4071069652835,8.84979666461846,0,0,0,0.696710015581316,0.128867461322093,0.605050573870028,0.22237804384487,0,0.474529061544512,0,0,0,0.38992817423824,0,0.432276099749388,0,0.189667900953082,0.456994050438915,0,0.610953983535943,0,0.0701358198903186,0.0632365371242573,0,0,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0.549122826376163,0,0.372140947668503,0.624075346229121,0.252578877947112,0.358794827043824,0,0.369506380333209,0.189491411770485,0.488894929326078,1.01847051465113,0.469380496577004,0.335012514883631,0.476087281772027,0,0.157635144106191,0.221464689648775,0.159454768657487,0,0,0.144649058581512,1.50791283939272,1.08781136763742,0,0,10.2752377592187,9.61135830056066,0,0,0,0.390438744296638,0.646270193198397,1.67278158566786,0.891194696329576,1.41538265394416,2.42886421004937,0.876767573733936,1.58115111178609,17.6726724031994,0.283880170416537,0.534196811001766,0.162886959353576,0.329940245945071,1.32745138339963,0,0.302323556964751,0.565815239267694,0.295301892880773,0.307435147943927,0.258428293168221,0.727067458955011,0,0.316036757935816,0,0,16.6815406819356,0.900305470156551,1.03486947026204,3.42939256050548,6.56158864476412,6.59964625127661,5.26556865926787,1.522324745573,0,0,0.220528398054962,0,0,0.120625849856312,0,0,0,6.30446026835733,0,0,0.185194527369712,0,0.136694227721025,0,0,0.419854356970974,0.414599921413271,0,0.790839983952838,0.203319467126849,0.648032044930808,0.418176592028937,0.655087691238533,0.674321731924103,0.330613822901344,0.26175594198403,0,0,0.56369293868419,0,0,0,0,0,0.117357238645754,0.5208175393758,0,0.483168241652012,0.576060012515731,0.316011120628178,0,0.205421914329655,0.25984164595559,0.358053391334963,0.198681354781265,0.240390899039938,0.738447635872886,0.302899349844443,0.990688486514998,0.504130925684203,0.682205165178267,0.384847366561318,1.16876902181569,0,0,0,0,0,0.563047426353546,0.183151624267265,0.214368379079066,0,17.5073071211291,11.5081309126794,10.3121192419091,12.0297227640581,8.22099023724771,17.3740596399631,8.77529250301348,16.2115633160719,16.7662691324156,13.9795284172991,0.62272408550506,3.19219898720825,1.02440163452481,1.21553358534147,1.25767897576789,2.02227859295016,1.77797382241292,1.64828045791115,0.962757628775446,1.76888048234658,2.28131369901216,1.69763707247469,1.77918864192777,1.92075457214608,2.06767688240208,2.85776214769844,2.0859178670074,2.12200142510076,2.06042950401653,1.91358596174717,2.05721551431249,2.12970967391205,2.14592570952589,2.18019624948493,2.07040636913727,2.19997980518359,1.46342378298218,1.57841826862706,1.90125759384206,1.68342681497322,0.593175090620871,1.47756723563345,2.45538625901814,2.63392630016142,1.73615949883027,2.24829520144151,1.40358965067245,1.93383948643468,0.382576664137687,0.441182838239031,0.695603506861264|short_description=p2@Arid4a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=238247 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q9V1 | |||
|association_with_transcript=0bp_to_ENSMUST00000135709_5end | |||
|cluster_id=chr12:72149325..72149343,+ | |||
|description=CAGE_peak_2_at_Arid4a_5end | |||
|id=chr12:72149325..72149343,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.59e-12!23;CL:0000337!2.59e-12!23;CL:0000540!1.48e-11!33;CL:0000047!1.48e-11!33;CL:0000031!1.48e-11!33;CL:0000404!1.48e-11!33;CL:0002319!3.43e-11!43;CL:0000221!4.80e-11!44;CL:0000133!4.80e-11!44;CL:0000393!1.89e-10!39;CL:0000211!1.89e-10!39;CL:0000055!8.75e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.31e-17,23;CL:0000337,4.31e-17,23;CL:0000540,2.97e-13,33;CL:0000047,2.97e-13,33;CL:0000031,2.97e-13,33;CL:0000404,2.97e-13,33;CL:0000393,2.94e-11,39;CL:0000211,2.94e-11,39;CL:0002319,3.95e-10,43;CL:0000221,1.10e-09,44;CL:0000133,1.10e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.33e-31!73;UBERON:0005743!7.33e-31!73;UBERON:0000073!1.94e-30!75;UBERON:0001016!1.94e-30!75;UBERON:0002346!4.81e-27!71;UBERON:0003075!4.81e-27!71;UBERON:0007284!4.81e-27!71;UBERON:0001049!1.30e-26!52;UBERON:0005068!1.30e-26!52;UBERON:0006241!1.30e-26!52;UBERON:0007135!1.30e-26!52;UBERON:0000955!3.57e-26!50;UBERON:0006238!3.57e-26!50;UBERON:0002616!2.21e-25!49;UBERON:0004121!7.23e-25!102;UBERON:0000924!7.23e-25!102;UBERON:0006601!7.23e-25!102;UBERON:0000033!1.77e-24!63;UBERON:0003056!9.91e-22!49;UBERON:0003080!8.66e-21!40;UBERON:0002780!4.06e-20!39;UBERON:0001890!4.06e-20!39;UBERON:0006240!4.06e-20!39;UBERON:0002020!3.53e-18!34;UBERON:0002791!9.08e-16!29;UBERON:0003528!9.08e-16!29;UBERON:0001893!9.08e-16!29;UBERON:0007811!1.56e-15!86;UBERON:0000153!8.26e-15!94;UBERON:0000956!4.28e-11!21;UBERON:0001869!4.28e-11!21;UBERON:0000203!4.28e-11!21;UBERON:0002619!2.62e-09!17;UBERON:0002021!1.10e-07!10;UBERON:0000411!1.10e-07!10;UBERON:0001950!1.10e-07!10;UBERON:0000025!2.51e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.10e-35,54;UBERON:0001017,5.50e-35,73;UBERON:0001016,1.50e-34,75;UBERON:0001049,2.35e-33,52;UBERON:0005068,2.35e-33,52;UBERON:0006241,2.35e-33,52;UBERON:0007135,2.35e-33,52;UBERON:0002346,2.76e-31,64;UBERON:0003075,2.76e-31,64;UBERON:0007284,2.76e-31,64;UBERON:0000955,7.40e-30,47;UBERON:0006238,7.40e-30,47;UBERON:0004121,6.40e-29,95;UBERON:0000924,6.40e-29,95;UBERON:0006601,6.40e-29,95;UBERON:0002616,9.07e-29,46;UBERON:0003056,3.30e-27,49;UBERON:0003080,5.10e-27,40;UBERON:0002780,4.60e-26,39;UBERON:0001890,4.60e-26,39;UBERON:0006240,4.60e-26,39;UBERON:0010371,6.75e-25,73;UBERON:0002020,2.21e-24,34;UBERON:0003528,6.72e-21,29;UBERON:0002791,6.72e-21,29;UBERON:0001893,6.72e-21,29;UBERON:0010314,2.42e-19,92;UBERON:0000956,3.34e-14,21;UBERON:0001869,3.34e-14,21;UBERON:0000203,3.34e-14,21;UBERON:0002619,1.25e-11,17;UBERON:0002021,2.06e-10,10;UBERON:0000411,2.06e-10,10;UBERON:0001950,2.06e-10,10;UBERON:0002420,6.26e-08,8;UBERON:0007245,6.26e-08,8;UBERON:0010009,6.26e-08,8;UBERON:0010011,6.26e-08,8;UBERON:0000454,6.26e-08,8;UBERON:0000025,1.11e-07,114;UBERON:0003076,9.00e-07,12;UBERON:0003057,9.00e-07,12 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.645616617207881,0,0,0,0,0,0.34968160967599,0,0.202475267389826,0,0.473193248037357,1.23402990245165,0.42438965179803,4.08207792725135,2.48227378002213,2.35079810225042,0.159992422793407,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0.782391344348039,0.65407546914134,0.439372365468944,0.388859798148567,0.55994568650145,1.43752564364972,0.335565212115473,0,0,0.514518872071894,1.14613375975503,1.03134418455488,3.64169629547276,3.70293685490423,3.80298842103708,0,0,0,0,0,0.599200221036809,1.15265491596466,2.17748185847803,2.29510095163874,2.52389953621658,1.71390590642282,3.3130281142742,3.79721477566358,3.45043695665651,3.67687514644008,12.1127469099328,9.70423769447427,10.1380311949121,3.03338461779446,4.20843160571084,7.29278718779464,5.862842979029,14.6318278608237,11.6126668310376,7.95497180778903,11.6744778255264,6.33758115806022,0.075726193333184,1.36028808192214,0.579728977403356,0,0,0,0,0,0.421333260395256,0.511290967734173,0,0.70667914902068,0.422530259330042,0,0,0,0,0,0,0.91347103775248,2.07150306917737,0.890652834388949,1.04091196059682,0.608930956624282,0.691846491768175,2.11011696773672,0.587943535678524,0.753999547978053,0,0.433798070759735,0,0.161766849947409,0,0.484875253135222,0,15.2246014446005,13.1951425292477,0,0,0,0,11.9832511523858,16.4700217014706,19.2251158732683,18.5992022605736,18.6672283851141,11.8439185398949,11.1946471516753,0.101839363850316,0.124406970610093,0,1.89397670297827,0,0.689706313300419,0.720248519221397,1.9591626318643,1.56483948048054,2.8185018462667,2.15513966487376,3.62184719034622,0,0.567318240503458,0.175951124163949,0.43839146485515,0.834141747676794,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0,1.08037236876609,0.710234206755631,0.196764231747404,0.771335564436891,0.465067889500816,0.268273401399619,0,0.493679549740441,0.32833492815819,0.162137619091711,0,0,0.268412837520744,12.4071069652835,8.84979666461846,0,0,0,0.696710015581316,0.128867461322093,0.605050573870028,0.22237804384487,0,0.474529061544512,0,0,0,0.38992817423824,0,0.432276099749388,0,0.189667900953082,0.456994050438915,0,0.610953983535943,0,0.0701358198903186,0.0632365371242573,0,0,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0.549122826376163,0,0.372140947668503,0.624075346229121,0.252578877947112,0.358794827043824,0,0.369506380333209,0.189491411770485,0.488894929326078,1.01847051465113,0.469380496577004,0.335012514883631,0.476087281772027,0,0.157635144106191,0.221464689648775,0.159454768657487,0,0,0.144649058581512,1.50791283939272,1.08781136763742,0,0,10.2752377592187,9.61135830056066,0,0,0,0.390438744296638,0.646270193198397,1.67278158566786,0.891194696329576,1.41538265394416,2.42886421004937,0.876767573733936,1.58115111178609,17.6726724031994,0.283880170416537,0.534196811001766,0.162886959353576,0.329940245945071,1.32745138339963,0,0.302323556964751,0.565815239267694,0.295301892880773,0.307435147943927,0.258428293168221,0.727067458955011,0,0.316036757935816,0,0,16.6815406819356,0.900305470156551,1.03486947026204,3.42939256050548,6.56158864476412,6.59964625127661,5.26556865926787,1.522324745573,0,0,0.220528398054962,0,0,0.120625849856312,0,0,0,6.30446026835733,0,0,0.185194527369712,0,0.136694227721025,0,0,0.419854356970974,0.414599921413271,0,0.790839983952838,0.203319467126849,0.648032044930808,0.418176592028937,0.655087691238533,0.674321731924103,0.330613822901344,0.26175594198403,0,0,0.56369293868419,0,0,0,0,0,0.117357238645754,0.5208175393758,0,0.483168241652012,0.576060012515731,0.316011120628178,0,0.205421914329655,0.25984164595559,0.358053391334963,0.198681354781265,0.240390899039938,0.738447635872886,0.302899349844443,0.990688486514998,0.504130925684203,0.682205165178267,0.384847366561318,1.16876902181569,0,0,0,0,0,0.563047426353546,0.183151624267265,0.214368379079066,0,17.5073071211291,11.5081309126794,10.3121192419091,12.0297227640581,8.22099023724771,17.3740596399631,8.77529250301348,16.2115633160719,16.7662691324156,13.9795284172991,0.62272408550506,3.19219898720825,1.02440163452481,1.21553358534147,1.25767897576789,2.02227859295016,1.77797382241292,1.64828045791115,0.962757628775446,1.76888048234658,2.28131369901216,1.69763707247469,1.77918864192777,1.92075457214608,2.06767688240208,2.85776214769844,2.0859178670074,2.12200142510076,2.06042950401653,1.91358596174717,2.05721551431249,2.12970967391205,2.14592570952589,2.18019624948493,2.07040636913727,2.19997980518359,1.46342378298218,1.57841826862706,1.90125759384206,1.68342681497322,0.593175090620871,1.47756723563345,2.45538625901814,2.63392630016142,1.73615949883027,2.24829520144151,1.40358965067245,1.93383948643468,0.382576664137687,0.441182838239031,0.695603506861264 | |||
|short_description=p2@Arid4a | |||
}} |
Latest revision as of 18:01, 26 September 2015
Short description: | p2@Arid4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Arid4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000135709_5end |
EntrezGene: | Arid4a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.31e-17 | 23 |
neuroblast (sensu Vertebrata) | 4.31e-17 | 23 |
neuron | 2.97e-13 | 33 |
neuronal stem cell | 2.97e-13 | 33 |
neuroblast | 2.97e-13 | 33 |
electrically signaling cell | 2.97e-13 | 33 |
electrically responsive cell | 2.94e-11 | 39 |
electrically active cell | 2.94e-11 | 39 |
neural cell | 3.95e-10 | 43 |
ectodermal cell | 1.10e-09 | 44 |
neurectodermal cell | 1.10e-09 | 44 |