FFCP PHASE1:Mm9::chr12:5382517..5382541,-: Difference between revisions
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{{FFCP|EntrezGene=208439|HGNC=|MCL_coexpression_id=1|UniProt=G3X8T6,F7AGI9,B7ZNG7|association_with_transcript=-29bp_to_ENSMUST00000020958,ENSMUST00000170609,NM_001164493,uc007myw.2_5end|description=CAGE_peak_2_at_Klhl29_5end|id=chr12:5382517..5382541,-|ontology_enrichment_celltype=CL:0000540!3.05e-15!33;CL:0000047!3.05e-15!33;CL:0000031!3.05e-15!33;CL:0000404!3.05e-15!33;CL:0000393!2.77e-14!39;CL:0000211!2.77e-14!39;CL:0000221!8.31e-13!44;CL:0000133!8.31e-13!44;CL:0002319!1.57e-12!43;CL:0000117!2.31e-12!23;CL:0000337!2.31e-12!23;CL:0000055!8.47e-12!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.16e-16,33;CL:0000047,3.16e-16,33;CL:0000031,3.16e-16,33;CL:0000404,3.16e-16,33;CL:0000393,3.37e-15,39;CL:0000211,3.37e-15,39;CL:0000221,8.20e-14,44;CL:0000133,8.20e-14,44;CL:0002319,1.63e-13,43;CL:0000117,3.87e-13,23;CL:0000337,3.87e-13,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.04e-33!102;UBERON:0000924!3.04e-33!102;UBERON:0006601!3.04e-33!102;UBERON:0001017!2.29e-30!73;UBERON:0005743!2.29e-30!73;UBERON:0000073!1.04e-29!75;UBERON:0001016!1.04e-29!75;UBERON:0002346!3.33e-28!71;UBERON:0003075!3.33e-28!71;UBERON:0007284!3.33e-28!71;UBERON:0000033!5.69e-25!63;UBERON:0001049!1.62e-23!52;UBERON:0005068!1.62e-23!52;UBERON:0006241!1.62e-23!52;UBERON:0007135!1.62e-23!52;UBERON:0000955!4.63e-23!50;UBERON:0006238!4.63e-23!50;UBERON:0002616!2.68e-22!49;UBERON:0003056!3.18e-22!49;UBERON:0003080!5.91e-19!40;UBERON:0002780!2.97e-18!39;UBERON:0001890!2.97e-18!39;UBERON:0006240!2.97e-18!39;UBERON:0002020!2.06e-17!34;UBERON:0002791!6.63e-15!29;UBERON:0003528!6.63e-15!29;UBERON:0001893!6.63e-15!29;UBERON:0000153!1.40e-13!94;UBERON:0007811!3.71e-12!86;UBERON:0000956!2.13e-10!21;UBERON:0001869!2.13e-10!21;UBERON:0000203!2.13e-10!21;UBERON:0000468!2.74e-10!333;UBERON:0002619!4.96e-09!17;UBERON:0000922!1.27e-07!328;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.64e-35,95;UBERON:0000924,2.64e-35,95;UBERON:0006601,2.64e-35,95;UBERON:0001017,1.06e-32,73;UBERON:0001016,5.39e-32,75;UBERON:0010371,5.67e-31,73;UBERON:0002346,1.70e-30,64;UBERON:0003075,1.70e-30,64;UBERON:0007284,1.70e-30,64;UBERON:0000073,9.77e-27,54;UBERON:0001049,4.21e-25,52;UBERON:0005068,4.21e-25,52;UBERON:0006241,4.21e-25,52;UBERON:0007135,4.21e-25,52;UBERON:0003056,1.03e-23,49;UBERON:0000955,1.75e-22,47;UBERON:0006238,1.75e-22,47;UBERON:0002616,1.11e-21,46;UBERON:0003080,3.30e-20,40;UBERON:0010314,1.16e-19,92;UBERON:0002780,1.86e-19,39;UBERON:0001890,1.86e-19,39;UBERON:0006240,1.86e-19,39;UBERON:0002020,1.49e-18,34;UBERON:0003528,7.27e-16,29;UBERON:0002791,7.27e-16,29;UBERON:0001893,7.27e-16,29;UBERON:0000956,4.93e-11,21;UBERON:0001869,4.93e-11,21;UBERON:0000203,4.93e-11,21;UBERON:0002619,1.44e-09,17;UBERON:0002021,8.24e-08,10;UBERON:0000411,8.24e-08,10;UBERON:0001950,8.24e-08,10|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,3.656861476496,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,1.51076181570693,1.72340783073175,1.10128051297009,1.56478268869608,1.52617609466313,3.07560655828261,1.36100929351998,1.53985063787899,0,0,0,0,3.08711323243136,1.43266719969378,3.09403255366465,7.89034197352431,8.99284664762456,11.4089652631112,0.338844532069132,2.66788438833342,0.449949858640699,0,0,1.79760066311043,1.92109152660777,4.97710139080693,4.05017814995072,3.36519938162211,8.56952953211411,5.30084498283872,6.49201235839256,6.90087391331302,5.51531271966013,11.0115880999389,10.7257363991558,9.36999852863085,9.75958529203434,9.78917786545783,10.939180781692,3.62937898701795,6.75315132038016,9.47349136216223,9.72274332063103,5.12538050876771,6.15118171223492,1.51452386666368,1.058001841495,0.579728977403356,0.860423876981386,0.679971333707751,0,0,0,0.983110940922263,0,0,0,3.80277233397037,0,0,0,0,0.760079596425296,0,0.79928715803342,0,3.56261133755579,2.60227990149204,1.52232739156071,3.45923245884088,1.20578112442098,1.64624189989987,1.75933227861546,1.48316980640624,1.01219549843938,0,2.91180329905337,0.662524555381181,0,1.86391761218122,5.85561594023094,5.02672096352292,1.02182822083437,0,0,0,12.1330417917906,17.3850229071078,13.1937069718508,11.298580812498,13.0414883238469,8.51930982694196,12.0058534670141,2.24046600470696,0.124406970610093,0.758168275301024,2.31486041475121,5.59517904739626,4.13823787980251,3.42118046630164,5.27466862425003,5.17077393550092,4.86832137082429,8.52685693493532,4.65666067330228,5.17363183038821,5.8622884852024,5.63043597324636,2.41115305670332,3.05851974148158,4.179025998266,2.88094990971121,1.79130840136644,0,0,0,0.828503090142008,1.17263029990548,1.08037236876609,0.710234206755631,1.18058539048442,0.925602677324269,0.232533944750408,0,0.467061369468678,0.329119699826961,0.32833492815819,0.324275238183423,0.292399974850665,0.219550115291051,0.134206418760372,10.3042074796422,3.39585220851639,0,0,3.41261200856374,6.0381534683714,3.092819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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=208439 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=G3X8T6,F7AGI9,B7ZNG7 | |||
|association_with_transcript=-29bp_to_ENSMUST00000020958,ENSMUST00000170609,NM_001164493,uc007myw.2_5end | |||
|cluster_id=chr12:5382517..5382541,- | |||
|description=CAGE_peak_2_at_Klhl29_5end | |||
|id=chr12:5382517..5382541,- | |||
|ontology_enrichment_celltype=CL:0000540!3.05e-15!33;CL:0000047!3.05e-15!33;CL:0000031!3.05e-15!33;CL:0000404!3.05e-15!33;CL:0000393!2.77e-14!39;CL:0000211!2.77e-14!39;CL:0000221!8.31e-13!44;CL:0000133!8.31e-13!44;CL:0002319!1.57e-12!43;CL:0000117!2.31e-12!23;CL:0000337!2.31e-12!23;CL:0000055!8.47e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.16e-16,33;CL:0000047,3.16e-16,33;CL:0000031,3.16e-16,33;CL:0000404,3.16e-16,33;CL:0000393,3.37e-15,39;CL:0000211,3.37e-15,39;CL:0000221,8.20e-14,44;CL:0000133,8.20e-14,44;CL:0002319,1.63e-13,43;CL:0000117,3.87e-13,23;CL:0000337,3.87e-13,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.04e-33!102;UBERON:0000924!3.04e-33!102;UBERON:0006601!3.04e-33!102;UBERON:0001017!2.29e-30!73;UBERON:0005743!2.29e-30!73;UBERON:0000073!1.04e-29!75;UBERON:0001016!1.04e-29!75;UBERON:0002346!3.33e-28!71;UBERON:0003075!3.33e-28!71;UBERON:0007284!3.33e-28!71;UBERON:0000033!5.69e-25!63;UBERON:0001049!1.62e-23!52;UBERON:0005068!1.62e-23!52;UBERON:0006241!1.62e-23!52;UBERON:0007135!1.62e-23!52;UBERON:0000955!4.63e-23!50;UBERON:0006238!4.63e-23!50;UBERON:0002616!2.68e-22!49;UBERON:0003056!3.18e-22!49;UBERON:0003080!5.91e-19!40;UBERON:0002780!2.97e-18!39;UBERON:0001890!2.97e-18!39;UBERON:0006240!2.97e-18!39;UBERON:0002020!2.06e-17!34;UBERON:0002791!6.63e-15!29;UBERON:0003528!6.63e-15!29;UBERON:0001893!6.63e-15!29;UBERON:0000153!1.40e-13!94;UBERON:0007811!3.71e-12!86;UBERON:0000956!2.13e-10!21;UBERON:0001869!2.13e-10!21;UBERON:0000203!2.13e-10!21;UBERON:0000468!2.74e-10!333;UBERON:0002619!4.96e-09!17;UBERON:0000922!1.27e-07!328;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.64e-35,95;UBERON:0000924,2.64e-35,95;UBERON:0006601,2.64e-35,95;UBERON:0001017,1.06e-32,73;UBERON:0001016,5.39e-32,75;UBERON:0010371,5.67e-31,73;UBERON:0002346,1.70e-30,64;UBERON:0003075,1.70e-30,64;UBERON:0007284,1.70e-30,64;UBERON:0000073,9.77e-27,54;UBERON:0001049,4.21e-25,52;UBERON:0005068,4.21e-25,52;UBERON:0006241,4.21e-25,52;UBERON:0007135,4.21e-25,52;UBERON:0003056,1.03e-23,49;UBERON:0000955,1.75e-22,47;UBERON:0006238,1.75e-22,47;UBERON:0002616,1.11e-21,46;UBERON:0003080,3.30e-20,40;UBERON:0010314,1.16e-19,92;UBERON:0002780,1.86e-19,39;UBERON:0001890,1.86e-19,39;UBERON:0006240,1.86e-19,39;UBERON:0002020,1.49e-18,34;UBERON:0003528,7.27e-16,29;UBERON:0002791,7.27e-16,29;UBERON:0001893,7.27e-16,29;UBERON:0000956,4.93e-11,21;UBERON:0001869,4.93e-11,21;UBERON:0000203,4.93e-11,21;UBERON:0002619,1.44e-09,17;UBERON:0002021,8.24e-08,10;UBERON:0000411,8.24e-08,10;UBERON:0001950,8.24e-08,10 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,3.656861476496,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,1.51076181570693,1.72340783073175,1.10128051297009,1.56478268869608,1.52617609466313,3.07560655828261,1.36100929351998,1.53985063787899,0,0,0,0,3.08711323243136,1.43266719969378,3.09403255366465,7.89034197352431,8.99284664762456,11.4089652631112,0.338844532069132,2.66788438833342,0.449949858640699,0,0,1.79760066311043,1.92109152660777,4.97710139080693,4.05017814995072,3.36519938162211,8.56952953211411,5.30084498283872,6.49201235839256,6.90087391331302,5.51531271966013,11.0115880999389,10.7257363991558,9.36999852863085,9.75958529203434,9.78917786545783,10.939180781692,3.62937898701795,6.75315132038016,9.47349136216223,9.72274332063103,5.12538050876771,6.15118171223492,1.51452386666368,1.058001841495,0.579728977403356,0.860423876981386,0.679971333707751,0,0,0,0.983110940922263,0,0,0,3.80277233397037,0,0,0,0,0.760079596425296,0,0.79928715803342,0,3.56261133755579,2.60227990149204,1.52232739156071,3.45923245884088,1.20578112442098,1.64624189989987,1.75933227861546,1.48316980640624,1.01219549843938,0,2.91180329905337,0.662524555381181,0,1.86391761218122,5.85561594023094,5.02672096352292,1.02182822083437,0,0,0,12.1330417917906,17.3850229071078,13.1937069718508,11.298580812498,13.0414883238469,8.51930982694196,12.0058534670141,2.24046600470696,0.124406970610093,0.758168275301024,2.31486041475121,5.59517904739626,4.13823787980251,3.42118046630164,5.27466862425003,5.17077393550092,4.86832137082429,8.52685693493532,4.65666067330228,5.17363183038821,5.8622884852024,5.63043597324636,2.41115305670332,3.05851974148158,4.179025998266,2.88094990971121,1.79130840136644,0,0,0,0.828503090142008,1.17263029990548,1.08037236876609,0.710234206755631,1.18058539048442,0.925602677324269,0.232533944750408,0,0.467061369468678,0.329119699826961,0.32833492815819,0.324275238183423,0.292399974850665,0.219550115291051,0.134206418760372,10.3042074796422,3.39585220851639,0,0,3.41261200856374,6.0381534683714,3.09281907173024,1.81515172161008,0.667134131534611,0.951128130562796,0.474529061544512,0.988193728344065,1.50801125280162,1.1937388322469,0.38992817423824,0,0,0.199141273254367,1.51734320762465,2.39921876480431,2.25415471346161,1.4255592949172,1.35766741017338,2.24434623649019,0.758838445491087,0.738050739898011,0.941992367048249,0.123397163921801,0,0.667380422864376,0.786235980452812,0.224862112384854,0.202860121388503,0.241177159752417,0.763877555344259,0.287696137450811,0.162135226775035,0.549122826376163,0,1.11642284300551,0.624075346229121,0.252578877947112,0,0,0.923765950833023,1.51593129416388,1.79261474086228,1.35796068620151,1.40814148973101,0.502518772325447,1.42826184531608,1.95133647857799,0.945810864637146,0.664394068946325,2.07291199254733,0.491589944147214,1.20879487306127,1.01254341007058,0,0,3.93411418415229,2.48343071674259,5.45872005958493,6.56385444916338,1.63934945376675,1.00988370881749,4.10160685241134,5.46614242015294,7.10897212518236,3.82350076724083,4.23317480756549,7.35998980050964,3.23848561339915,4.38383786866968,4.34816555741176,17.3513510867776,0.99358059645788,1.24645922567079,3.58351310577867,3.29940245945071,0,0.728341908464944,1.209294227859,0.943025398779491,0.590603785761546,1.53717573971964,1.55056975900933,1.81766864738753,0.712994756769443,0.632073515871632,1.05418608574999,0,2.7235168460303,4.14140516272013,4.01011919726539,6.00143698088458,3.19212420556092,3.38900753443934,4.44282355625727,4.56697423671899,2.81606049676452,3.81297727554876,0.441056796109924,2.4732937941222,1.45317984026315,2.95533332147964,2.38744688006273,2.1338316966858,0.291480836629851,5.56275906031529,0.683483523191411,3.30218988741156,2.22233432843654,0.753473828018764,0.410082683163076,0.457556346413045,0,0,0.138199973804424,0,4.58687190692646,4.47302827679067,2.16010681643603,2.09088296014469,2.62035076495413,1.75323650300267,2.72756403893609,0.26175594198403,0.518459893167171,0,0,0.747582730219894,0.827292452285488,1.16670713006429,1.42075805825504,1.18269287843545,1.40828686374905,1.69265700297135,1.8874681996628,0.483168241652012,0,0.632022241256357,2.22997736819181,2.15693010046137,0.649604114888975,1.25318686967237,1.19208812868759,0.480781798079875,0.590758108698309,0.504832249740738,0.838274873204998,0.201652370273681,0.194915761479505,0.481059208201647,0.116876902181569,0.906921534460845,0.443971906748129,0.269141569828427,1.17519231454855,2.12508553435409,1.50145980360946,1.09890974560359,4.07299920250225,0.501572104035363,6.21227026878773,11.5081309126794,8.02053718815155,5.499301834998,11.6464028361009,15.8632718451837,11.4753825039407,12.158672487054,9.9691329976525,13.4617681055473,2.80225838477277,8.37952234142165,6.31714341290296,2.43106717068294,3.77303692730368,1.65459157605013,2.44471400581777,2.47242068686673,2.24643446714271,3.03236654116557,3.54871019846336,3.01802146217722,3.46473577638565,3.00918216302886,3.10151532360312,4.2866432215476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| |||
|short_description=p2@Klhl29 | |||
}} |
Latest revision as of 16:03, 26 September 2015
Short description: | p2@Klhl29 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Klhl29_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -29bp_to_ENSMUST00000020958, ENSMUST00000170609, NM_001164493, uc007myw.2_5end |
EntrezGene: | Klhl29 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.16e-16 | 33 |
neuronal stem cell | 3.16e-16 | 33 |
neuroblast | 3.16e-16 | 33 |
electrically signaling cell | 3.16e-16 | 33 |
electrically responsive cell | 3.37e-15 | 39 |
electrically active cell | 3.37e-15 | 39 |
ectodermal cell | 8.20e-14 | 44 |
neurectodermal cell | 8.20e-14 | 44 |
neural cell | 1.63e-13 | 43 |
CNS neuron (sensu Vertebrata) | 3.87e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.87e-13 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.64e-35 | 95 |
ectoderm | 2.64e-35 | 95 |
presumptive ectoderm | 2.64e-35 | 95 |
central nervous system | 1.06e-32 | 73 |
nervous system | 5.39e-32 | 75 |
ecto-epithelium | 5.67e-31 | 73 |
neurectoderm | 1.70e-30 | 64 |
neural plate | 1.70e-30 | 64 |
presumptive neural plate | 1.70e-30 | 64 |
regional part of nervous system | 9.77e-27 | 54 |
neural tube | 4.21e-25 | 52 |
neural rod | 4.21e-25 | 52 |
future spinal cord | 4.21e-25 | 52 |
neural keel | 4.21e-25 | 52 |
pre-chordal neural plate | 1.03e-23 | 49 |
brain | 1.75e-22 | 47 |
future brain | 1.75e-22 | 47 |
regional part of brain | 1.11e-21 | 46 |
anterior neural tube | 3.30e-20 | 40 |
structure with developmental contribution from neural crest | 1.16e-19 | 92 |
regional part of forebrain | 1.86e-19 | 39 |
forebrain | 1.86e-19 | 39 |
future forebrain | 1.86e-19 | 39 |
gray matter | 1.49e-18 | 34 |
brain grey matter | 7.27e-16 | 29 |
regional part of telencephalon | 7.27e-16 | 29 |
telencephalon | 7.27e-16 | 29 |
cerebral cortex | 4.93e-11 | 21 |
cerebral hemisphere | 4.93e-11 | 21 |
pallium | 4.93e-11 | 21 |
regional part of cerebral cortex | 1.44e-09 | 17 |
occipital lobe | 8.24e-08 | 10 |
visual cortex | 8.24e-08 | 10 |
neocortex | 8.24e-08 | 10 |