FFCP PHASE1:Mm9::chr12:4038905..4038957,-: Difference between revisions
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{{FFCP|EntrezGene=668212|HGNC=|MCL_coexpression_id=13|UniProt=Q6ZQ18|association_with_transcript=0bp_to_ENSMUST00000077156,ENSMUST00000111178,NM_001082483,uc007mxh.1_5end|description=CAGE_peak_2_at_Efr3b_5end|id=chr12:4038905..4038957,-|ontology_enrichment_celltype=CL:0000117!9.78e-15!23;CL:0000337!9.78e-15!23;CL:0000540!1.13e-12!33;CL:0000047!1.13e-12!33;CL:0000031!1.13e-12!33;CL:0000404!1.13e-12!33;CL:0000221!2.58e-09!44;CL:0000133!2.58e-09!44;CL:0002319!3.61e-09!43;CL:0000393!1.66e-08!39;CL:0000211!1.66e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.39e-15,23;CL:0000337,2.39e-15,23;CL:0000540,7.97e-13,33;CL:0000047,7.97e-13,33;CL:0000031,7.97e-13,33;CL:0000404,7.97e-13,33;CL:0000221,8.52e-09,44;CL:0000133,8.52e-09,44;CL:0002319,1.21e-08,43;CL:0000393,2.94e-08,39;CL:0000211,2.94e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.40e-23!73;UBERON:0005743!6.40e-23!73;UBERON:0000033!2.23e-22!63;UBERON:0000073!6.14e-22!75;UBERON:0001016!6.14e-22!75;UBERON:0002346!8.43e-22!71;UBERON:0003075!8.43e-22!71;UBERON:0007284!8.43e-22!71;UBERON:0001049!1.79e-20!52;UBERON:0005068!1.79e-20!52;UBERON:0006241!1.79e-20!52;UBERON:0007135!1.79e-20!52;UBERON:0004121!5.79e-20!102;UBERON:0000924!5.79e-20!102;UBERON:0006601!5.79e-20!102;UBERON:0000955!1.26e-19!50;UBERON:0006238!1.26e-19!50;UBERON:0003056!2.01e-19!49;UBERON:0002616!5.23e-19!49;UBERON:0002020!1.11e-17!34;UBERON:0003080!1.15e-15!40;UBERON:0002791!4.83e-15!29;UBERON:0003528!4.83e-15!29;UBERON:0001893!4.83e-15!29;UBERON:0002780!5.26e-15!39;UBERON:0001890!5.26e-15!39;UBERON:0006240!5.26e-15!39;UBERON:0000956!5.48e-10!21;UBERON:0001869!5.48e-10!21;UBERON:0000203!5.48e-10!21;UBERON:0007811!1.71e-08!86;UBERON:0000153!2.27e-08!94;UBERON:0002619!4.84e-08!17;UBERON:0000468!6.78e-08!333|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.28e-25,64;UBERON:0003075,3.28e-25,64;UBERON:0007284,3.28e-25,64;UBERON:0001017,6.21e-23,73;UBERON:0010314,7.35e-23,92;UBERON:0000073,4.87e-22,54;UBERON:0001016,9.82e-22,75;UBERON:0004121,7.96e-21,95;UBERON:0000924,7.96e-21,95;UBERON:0006601,7.96e-21,95;UBERON:0001049,1.12e-20,52;UBERON:0005068,1.12e-20,52;UBERON:0006241,1.12e-20,52;UBERON:0007135,1.12e-20,52;UBERON:0010371,2.36e-20,73;UBERON:0003056,2.97e-20,49;UBERON:0002020,1.99e-18,34;UBERON:0000955,8.52e-18,47;UBERON:0006238,8.52e-18,47;UBERON:0002616,3.59e-17,46;UBERON:0003080,2.56e-16,40;UBERON:0003528,1.14e-15,29;UBERON:0002791,1.14e-15,29;UBERON:0001893,1.14e-15,29;UBERON:0002780,1.25e-15,39;UBERON:0001890,1.25e-15,39;UBERON:0006240,1.25e-15,39;UBERON:0000956,2.23e-10,21;UBERON:0001869,2.23e-10,21;UBERON:0000203,2.23e-10,21;UBERON:0002619,2.42e-08,17|phase1_expression=4.64431656603902,10.8182376368202,12.2849794635175,9.37639055051173,10.0179145989269,3.3575854382378,1.16806320297763,0,0,0.468129052643987,0,0,0,0,0,0,0,0,0,0.42438965179803,5.52781385981954,0,0,1.59992422793407,1.37645568640302,6.31655160526522,4.30761996159075,3.878482188346,0,1.00812051903972,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0.782391344348039,0.65407546914134,1.75748946187577,2.3331587888914,1.25987779462826,1.43752564364972,0,0,0,0.771778308107841,0.286533439938757,0.515672092277442,50.9837481366186,43.9062512795787,43.7343668419264,0.338844532069132,0,0.449949858640699,0,0,1.19840044207362,2.30530983192933,23.019093932482,21.7359560714022,21.453146057841,21.1381728458815,18.7738259808871,25.6005770359254,27.6993411242703,31.2534387447407,37.4393995397922,34.6032686210859,34.8686830491673,59.6126020540476,50.3182039813253,42.1939830150976,38.806436861192,32.6402313818374,40.4915356608547,19.7401152267357,24.4879290974457,38.0254869483613,0.530083353332288,1.28471652181535,0.579728977403356,0,0,0,0,0,2.24711072210803,0,0,0,4.92951969218382,0,0,0,0,0,0,1.94112595522402,0,1.48442139064825,1.04091196059682,0.913396434936424,1.84492397804847,1.50722640552623,1.99900802130698,0.376999773989026,2.47194967734374,1.73519228303894,0,3.88240439873782,1.10420759230197,0.969750506270444,0,48.8943931009284,45.6593820853332,2.04365644166873,0.239630249011841,0,0,42.6903322303745,28.8225379775735,29.5287727465231,24.1615805067264,23.7815375317207,29.5059023274575,28.2299797737898,1.2220723662038,0.995255764880744,4.54900965180614,19.1502088856691,7.41686524887411,11.4951052216736,14.7650946440386,11.6042709733501,10.3415478710018,9.22418786050918,9.0890672822937,11.1242449417777,8.191583731448,5.48407632486676,5.63043597324636,1.09597866213787,2.22437799380478,1.74126083261083,1.85203922767149,1.99034266818493,0,0,0,13.2560494422721,8.67746421930056,7.38254451990161,8.99629995223799,6.29645541591692,5.55361606394562,3.72054311600653,6.9751084363901,3.85325629811659,2.63295759861569,3.77585167381919,3.32382119138008,5.11699955988663,4.17145219052996,2.95254121272818,18.2952255250791,24.8000115834075,1.98251269790279,3.96675849995316,3.62590025909898,1.85789337488351,3.09281907173024,1.81515172161008,2.6685365261384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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=668212 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q6ZQ18 | |||
|association_with_transcript=0bp_to_ENSMUST00000077156,ENSMUST00000111178,NM_001082483,uc007mxh.1_5end | |||
|cluster_id=chr12:4038905..4038957,- | |||
|description=CAGE_peak_2_at_Efr3b_5end | |||
|id=chr12:4038905..4038957,- | |||
|ontology_enrichment_celltype=CL:0000117!9.78e-15!23;CL:0000337!9.78e-15!23;CL:0000540!1.13e-12!33;CL:0000047!1.13e-12!33;CL:0000031!1.13e-12!33;CL:0000404!1.13e-12!33;CL:0000221!2.58e-09!44;CL:0000133!2.58e-09!44;CL:0002319!3.61e-09!43;CL:0000393!1.66e-08!39;CL:0000211!1.66e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.39e-15,23;CL:0000337,2.39e-15,23;CL:0000540,7.97e-13,33;CL:0000047,7.97e-13,33;CL:0000031,7.97e-13,33;CL:0000404,7.97e-13,33;CL:0000221,8.52e-09,44;CL:0000133,8.52e-09,44;CL:0002319,1.21e-08,43;CL:0000393,2.94e-08,39;CL:0000211,2.94e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.40e-23!73;UBERON:0005743!6.40e-23!73;UBERON:0000033!2.23e-22!63;UBERON:0000073!6.14e-22!75;UBERON:0001016!6.14e-22!75;UBERON:0002346!8.43e-22!71;UBERON:0003075!8.43e-22!71;UBERON:0007284!8.43e-22!71;UBERON:0001049!1.79e-20!52;UBERON:0005068!1.79e-20!52;UBERON:0006241!1.79e-20!52;UBERON:0007135!1.79e-20!52;UBERON:0004121!5.79e-20!102;UBERON:0000924!5.79e-20!102;UBERON:0006601!5.79e-20!102;UBERON:0000955!1.26e-19!50;UBERON:0006238!1.26e-19!50;UBERON:0003056!2.01e-19!49;UBERON:0002616!5.23e-19!49;UBERON:0002020!1.11e-17!34;UBERON:0003080!1.15e-15!40;UBERON:0002791!4.83e-15!29;UBERON:0003528!4.83e-15!29;UBERON:0001893!4.83e-15!29;UBERON:0002780!5.26e-15!39;UBERON:0001890!5.26e-15!39;UBERON:0006240!5.26e-15!39;UBERON:0000956!5.48e-10!21;UBERON:0001869!5.48e-10!21;UBERON:0000203!5.48e-10!21;UBERON:0007811!1.71e-08!86;UBERON:0000153!2.27e-08!94;UBERON:0002619!4.84e-08!17;UBERON:0000468!6.78e-08!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.28e-25,64;UBERON:0003075,3.28e-25,64;UBERON:0007284,3.28e-25,64;UBERON:0001017,6.21e-23,73;UBERON:0010314,7.35e-23,92;UBERON:0000073,4.87e-22,54;UBERON:0001016,9.82e-22,75;UBERON:0004121,7.96e-21,95;UBERON:0000924,7.96e-21,95;UBERON:0006601,7.96e-21,95;UBERON:0001049,1.12e-20,52;UBERON:0005068,1.12e-20,52;UBERON:0006241,1.12e-20,52;UBERON:0007135,1.12e-20,52;UBERON:0010371,2.36e-20,73;UBERON:0003056,2.97e-20,49;UBERON:0002020,1.99e-18,34;UBERON:0000955,8.52e-18,47;UBERON:0006238,8.52e-18,47;UBERON:0002616,3.59e-17,46;UBERON:0003080,2.56e-16,40;UBERON:0003528,1.14e-15,29;UBERON:0002791,1.14e-15,29;UBERON:0001893,1.14e-15,29;UBERON:0002780,1.25e-15,39;UBERON:0001890,1.25e-15,39;UBERON:0006240,1.25e-15,39;UBERON:0000956,2.23e-10,21;UBERON:0001869,2.23e-10,21;UBERON:0000203,2.23e-10,21;UBERON:0002619,2.42e-08,17 | |||
|phase1_expression=4.64431656603902,10.8182376368202,12.2849794635175,9.37639055051173,10.0179145989269,3.3575854382378,1.16806320297763,0,0,0.468129052643987,0,0,0,0,0,0,0,0,0,0.42438965179803,5.52781385981954,0,0,1.59992422793407,1.37645568640302,6.31655160526522,4.30761996159075,3.878482188346,0,1.00812051903972,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0.782391344348039,0.65407546914134,1.75748946187577,2.3331587888914,1.25987779462826,1.43752564364972,0,0,0,0.771778308107841,0.286533439938757,0.515672092277442,50.9837481366186,43.9062512795787,43.7343668419264,0.338844532069132,0,0.449949858640699,0,0,1.19840044207362,2.30530983192933,23.019093932482,21.7359560714022,21.453146057841,21.1381728458815,18.7738259808871,25.6005770359254,27.6993411242703,31.2534387447407,37.4393995397922,34.6032686210859,34.8686830491673,59.6126020540476,50.3182039813253,42.1939830150976,38.806436861192,32.6402313818374,40.4915356608547,19.7401152267357,24.4879290974457,38.0254869483613,0.530083353332288,1.28471652181535,0.579728977403356,0,0,0,0,0,2.24711072210803,0,0,0,4.92951969218382,0,0,0,0,0,0,1.94112595522402,0,1.48442139064825,1.04091196059682,0.913396434936424,1.84492397804847,1.50722640552623,1.99900802130698,0.376999773989026,2.47194967734374,1.73519228303894,0,3.88240439873782,1.10420759230197,0.969750506270444,0,48.8943931009284,45.6593820853332,2.04365644166873,0.239630249011841,0,0,42.6903322303745,28.8225379775735,29.5287727465231,24.1615805067264,23.7815375317207,29.5059023274575,28.2299797737898,1.2220723662038,0.995255764880744,4.54900965180614,19.1502088856691,7.41686524887411,11.4951052216736,14.7650946440386,11.6042709733501,10.3415478710018,9.22418786050918,9.0890672822937,11.1242449417777,8.191583731448,5.48407632486676,5.63043597324636,1.09597866213787,2.22437799380478,1.74126083261083,1.85203922767149,1.99034266818493,0,0,0,13.2560494422721,8.67746421930056,7.38254451990161,8.99629995223799,6.29645541591692,5.55361606394562,3.72054311600653,6.9751084363901,3.85325629811659,2.63295759861569,3.77585167381919,3.32382119138008,5.11699955988663,4.17145219052996,2.95254121272818,18.2952255250791,24.8000115834075,1.98251269790279,3.96675849995316,3.62590025909898,1.85789337488351,3.09281907173024,1.81515172161008,2.66853652613844,3.42406127002606,2.84717436926707,4.77626968699632,5.27803938480566,4.37704238490532,5.45899443933536,4.49409704327111,2.59365659849633,3.58454291857861,2.27601481143698,1.94222471436539,4.50830942692322,2.03651327845314,1.74557238450863,1.05203729835478,1.13825766823663,0.738050739898011,0.627994911365499,0.740382983530803,0.296452627087149,0.500535317148282,0,0,0,0,0.25462585178142,0.287696137450811,0,0.274561413188081,1.43768206527355,0.372140947668503,0.312037673114561,0.252578877947112,0.538192240565737,0,1.47802552133284,4.54779388249163,3.42226450528254,2.37643120085263,2.58159273117352,4.18765643604539,0.476087281772027,0.585400943573396,4.57141917907954,3.32197034473162,3.18909537314974,1.14704320301017,1.03610989119537,1.3018415272336,1.50791283939272,0.54390568381871,1.47529281905711,0.551873492609465,44.1514122466428,32.7020605592247,0,2.52470927204373,3.47059041357882,5.0757036758563,5.17016154558717,0.955875191810208,1.78238939265915,3.39691836946599,1.61924280669958,2.63030272120181,3.16230222357219,31.8108103257589,3.26462195979018,1.6025904330053,1.95464351224291,0.824850614862677,1.32745138339963,2.18502572539483,1.209294227859,2.07465587731488,2.06711325016541,2.76691633149535,3.6179961043551,3.27180356529755,2.85197902707777,0.632073515871632,0,3.09406629744561,2.04263763452273,6.12207719706455,3.62204314591713,3.42939256050548,1.95074257006501,2.31879462882692,3.1264313914403,2.74018454203139,0.469343416127421,6.56679419677843,0.661585194164886,0.8244312647074,1.13025098687134,0.603129249281559,0.596861720015682,0.492422699235184,3.78925087618806,37.455911006123,0,3.30218988741156,1.11116716421827,0.188368457004691,0.27338845544205,0,0.339956859987711,0.279902904647316,0.276399947608848,0,5.852215881251,2.03319467126849,2.59212817972323,2.29997125615916,1.52853794622324,1.48350781023303,1.07449492442937,0.523511883968059,0.388844919875379,0,0.56369293868419,2.69129782879162,1.32366792365678,0.388902376688095,1.54991788173277,1.35164900392623,1.17357238645754,1.3020438484395,3.25063967719704,0.483168241652012,0.864090018773596,0,0.608175645870493,0.718976700153791,0.51968329191118,0.895133478337407,0.596044064343795,0.360586348559907,0.147689527174577,0.201932899896295,0.304827226619999,0.100826185136841,0.194915761479505,0.384847366561318,0,1.58711268530648,0.443971906748129,0.0897138566094757,0.335769232728157,0.579568782096571,0.563047426353546,0.549454872801795,0.428736758158132,0,22.5900737046827,21.6352861158373,21.7700295106971,16.497905504994,21.2375581128899,20.3956352295219,13.5004500046361,33.7740902418165,23.5634052671786,34.6899408873719,8.40677515431831,11.5717213286299,11.439151585527,7.29320151204882,8.3845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| |||
|short_description=p2@Efr3b | |||
}} |
Latest revision as of 14:42, 26 September 2015
Short description: | p2@Efr3b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Efr3b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000077156, ENSMUST00000111178, NM_001082483, uc007mxh.1_5end |
EntrezGene: | Efr3b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.39e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.39e-15 | 23 |
neuron | 7.97e-13 | 33 |
neuronal stem cell | 7.97e-13 | 33 |
neuroblast | 7.97e-13 | 33 |
electrically signaling cell | 7.97e-13 | 33 |
ectodermal cell | 8.52e-09 | 44 |
neurectodermal cell | 8.52e-09 | 44 |
neural cell | 1.21e-08 | 43 |
electrically responsive cell | 2.94e-08 | 39 |
electrically active cell | 2.94e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.28e-25 | 64 |
neural plate | 3.28e-25 | 64 |
presumptive neural plate | 3.28e-25 | 64 |
central nervous system | 6.21e-23 | 73 |
structure with developmental contribution from neural crest | 7.35e-23 | 92 |
regional part of nervous system | 4.87e-22 | 54 |
nervous system | 9.82e-22 | 75 |
ectoderm-derived structure | 7.96e-21 | 95 |
ectoderm | 7.96e-21 | 95 |
presumptive ectoderm | 7.96e-21 | 95 |
neural tube | 1.12e-20 | 52 |
neural rod | 1.12e-20 | 52 |
future spinal cord | 1.12e-20 | 52 |
neural keel | 1.12e-20 | 52 |
ecto-epithelium | 2.36e-20 | 73 |
pre-chordal neural plate | 2.97e-20 | 49 |
gray matter | 1.99e-18 | 34 |
brain | 8.52e-18 | 47 |
future brain | 8.52e-18 | 47 |
regional part of brain | 3.59e-17 | 46 |
anterior neural tube | 2.56e-16 | 40 |
brain grey matter | 1.14e-15 | 29 |
regional part of telencephalon | 1.14e-15 | 29 |
telencephalon | 1.14e-15 | 29 |
regional part of forebrain | 1.25e-15 | 39 |
forebrain | 1.25e-15 | 39 |
future forebrain | 1.25e-15 | 39 |
cerebral cortex | 2.23e-10 | 21 |
cerebral hemisphere | 2.23e-10 | 21 |
pallium | 2.23e-10 | 21 |
regional part of cerebral cortex | 2.42e-08 | 17 |