FFCP PHASE1:Hg19::chr3:11762164..11762201,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9686 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28966 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000426568_5end | |||
|cluster_id=chr3:11762164..11762201,- | |||
|description=CAGE_peak_6_at_VGLL4_5end | |||
|id=chr3:11762164..11762201,- | |||
|ontology_enrichment_celltype=CL:0000066!3.26e-18!254;CL:0002076!7.01e-13!43;CL:0000223!2.21e-10!59;CL:0002251!6.27e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.35e-14;42!CL:0002251;1.80e-10;20!CL:0002159;4.16e-08;14!CL:0000622;3.39e-07;5!CL:0000039;6.68e-07;7!CL:0000586;6.68e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.61e-18,42;CL:0000066,1.94e-18,253;CL:0000223,2.07e-14,58;CL:0002251,1.28e-10,20;CL:0002159,3.32e-08,14;CL:0000622,3.77e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;2.14e-08;58 | |||
|ontology_enrichment_disease=DOID:305!3.01e-14!106;DOID:0050687!6.45e-12!143;DOID:299!2.18e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;9.80e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.00e-10,106;DOID:0050687,1.41e-07,143;DOID:299,9.02e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.00e-16!169;UBERON:0000925!5.00e-16!169;UBERON:0006595!5.00e-16!169;UBERON:0001007!8.09e-12!155;UBERON:0001555!8.09e-12!155;UBERON:0007026!8.09e-12!155;UBERON:0001004!9.15e-11!72;UBERON:0004921!1.61e-10!129;UBERON:0004185!1.61e-10!129;UBERON:0000077!3.59e-10!130;UBERON:0000065!3.15e-07!53;UBERON:0000161!3.66e-07!35;UBERON:0000064!9.17e-07!219;UBERON:0001041!9.70e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;3.08e-11;33!UBERON:0001041;1.17e-09;14!UBERON:0000310;3.18e-08;10!UBERON:0001443;3.06e-07;11!UBERON:0001555;3.09e-07;54!UBERON:0005409;3.23e-07;22!UBERON:0001044;6.19e-07;6!UBERON:0003293;6.19e-07;6!UBERON:0003294;6.19e-07;6!UBERON:0010047;6.19e-07;6!UBERON:0003408;6.19e-07;6!UBERON:0000167;6.19e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.43e-15,160;UBERON:0000925,4.43e-15,160;UBERON:0006595,4.43e-15,160;UBERON:0004921,2.35e-10,118;UBERON:0001007,6.53e-10,145;UBERON:0001555,6.53e-10,145;UBERON:0007026,6.53e-10,145;UBERON:0001004,1.15e-09,74;UBERON:0000310,9.91e-09,10;UBERON:0001443,1.09e-07,11;UBERON:0000161,1.10e-07,36;UBERON:0000166,2.29e-07,22;UBERON:0003124,2.38e-07,7;UBERON:0001044,3.79e-07,6;UBERON:0003293,3.79e-07,6;UBERON:0003294,3.79e-07,6;UBERON:0010047,3.79e-07,6;UBERON:0000167,3.79e-07,6;UBERON:0000915,6.35e-07,52 | |||
|phase1_expression=1.81678379270557,1.71280419112787,3.38290569830331,3.00219895059391,0.893922188854576,0.872338524100369,0,1.26343974685366,0.522371256399677,0.491467873003018,2.09340350391728,0.655324116390517,0.527533956456907,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0.313454721478088,1.14494394852423,0.821246550437305,0.502170558379211,0,0,0,0.786728553697808,0.767658796194425,0.464448369948228,3.67768489791571,2.10844143144775,1.47901604066715,2.86628642147116,1.70603078984906,0.293600439334847,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0.560508562981536,0.263384084775077,0.983548850569165,0,0.411202997999018,0,0.651844533267181,0,0,0.222820913770347,0,0,0,0.25618263945135,0.390178042679635,0.164437904603676,0,0,0,0,0,0.113309342697566,0,1.03088233644789,0.253019692019503,0,0,0,0.451725357233318,0.127986611154418,0,0,0.821127996921047,1.20964045934839,1.33720097891754,1.59306844271079,0,0,0.255725123687061,0.361439152384566,0.50133791063589,2.31754430337318,0,0,0,0,0,0.392937226493138,4.73583874780305,5.19098219898201,0,0,0,0,0,0,0.198762407366705,0,0,1.13061588384802,0,0.275118041940067,0.208994966536811,0.258416759169329,1.06729878806013,0.33472061276467,1.20848795132744,0,2.68468263302986,0,0,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,0,5.23312862571041,0,0.12663051166458,0.264818361626438,0.573673241497627,0,0,0,0,0.622422070799533,0.808264032418128,0,1.81628913173918,0.576175924479999,0,0,0,0.149448680551801,0.117434498643765,0,0,0,0.122834317311768,0.619954687054593,0,0.494533858557114,0,0,0.336672227908132,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0.358779271377724,0.85422955527427,1.69545520927649,0.300091096084402,0.103052529238439,0,0.930584281657949,0.168776332241266,0.584622030967192,0,0.920498986422993,0.484938170456436,0,0.201504196455281,0.339121184620975,2.12586938479627,2.18196896472668,2.29443676311203,0.609868530647977,0.397589304964456,0.348581828608555,0.310983165046111,1.00928340350251,0.36497735907583,0,0.643240938192885,0,0,0,0.828147600278907,0.505754070234305,0.723033089650446,0.992645754591546,0.871517776369625,0.949082476444386,1.34831308160164,1.37355025587742,1.15424147083917,0,0,0,0,0,0.982827216677626,0.590789906681404,0,2.58275720940538,0,7.13376855156066,4.49607013030478,1.70899253099772,3.33318402570707,0,0,0,0,0.117408694235822,1.29929802984966,0,2.09279567458058,4.74122638775565,2.57545848628462,0,0,0,2.81201501960331,2.01578553838631,1.55952606966625,1.79117045405697,1.74380363108377,0.766765358330422,0,0.176096868026452,0.207328115540772,0.288239906833923,0,0.063497894292169,0,0,0,0.616964956219941,0.300343057843917,0,0,0.87192013766656,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0.871533458600294,0.199945982364114,0,0,0,0.479249710983165,0,0,0,0.410952645100767,0,0,1.18218456121156,0.431255149719035,1.15508732651774,0.254094624222463,2.60279707715243,1.54657762555539,0.335032530668698,0.637938751653163,0,0,0.414415513436035,0.49076596687656,0,0,1.45579603071565,0.713715955188647,2.99634588564476,0.468565659970853,2.70851489754947,2.27407504055985,0,0,0,0.173767228936166,7.63624514104688,3.43143423810856,0.413536052245775,0,0.213455115606889,3.63753085735511,3.32870879020994,1.81434175997808,1.73675465473144,1.07423381301644,2.80660094433074,3.45975702990393,1.53512174720011,1.12597744800525,0,0,0,0,0,0,3.14234568938218,1.80455823272956,5.80110230296147,0,0.182091168006717,0.393373244878272,1.35359883872224,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,1.66215201785745,0,0,0,3.84675187674584,0.984043937099117,5.53143270929315,2.57602529119306,0.183138929636687,0.41254749960294,9.76251414593493,9.75090369054782,0,0.096670718292122,0,0,0,0,0,0,0.267096106940212,3.96683796866347,2.49847087574638,3.06270509987002,4.55210013849975,0,0,0,0,0,0,0,0.429374660225974,0.372158369359667,0.316379424718726,0.190630193923825,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0.655894752046633,0.202910376962704,0,0,0,0,0,0,1.47775344708365,0.658589785919804,0,0.349934720244983,3.36777394539292,2.68120910214315,0,2.54188262097304,3.01353760869861,6.73885902670502,4.87773168890343,2.75668080248351,0,0,0,0,0,0,0,0,1.92283328029452,2.88743956579008,0.980160863924127,0,0.28853842595289,0,0.318852545457645,0,0,0,0.649243880549111,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,1.8714054040822,0.586032717087576,0.36408156524854,3.23185814404687,0,5.96861211844225,1.48482340416319,4.91457123358771,0,0.422008249231538,0.556543525114529,0,1.26675244876796,1.9924798825107,1.10513566212459,0.503865495708552,0.511343412510774,0,0.311039587661807,0.539210106883961,3.40140231883657,0,0.887790650732402,0,0,0,0.185536196323703,1.99613798001194,8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| |||
|short_description=p6@VGLL4 | |||
}} |
Latest revision as of 19:00, 19 September 2015
Short description: | p6@VGLL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_VGLL4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000426568_5end |
EntrezGene: | VGLL4 |
HGNC: | 28966 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.61e-18 | 42 |
epithelial cell | 1.94e-18 | 253 |
endodermal cell | 2.07e-14 | 58 |
epithelial cell of alimentary canal | 1.28e-10 | 20 |
general ecto-epithelial cell | 3.32e-08 | 14 |
acinar cell | 3.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.43e-15 | 160 |
endoderm | 4.43e-15 | 160 |
presumptive endoderm | 4.43e-15 | 160 |
subdivision of digestive tract | 2.35e-10 | 118 |
digestive system | 6.53e-10 | 145 |
digestive tract | 6.53e-10 | 145 |
primitive gut | 6.53e-10 | 145 |
respiratory system | 1.15e-09 | 74 |
breast | 9.91e-09 | 10 |
chest | 1.09e-07 | 11 |
orifice | 1.10e-07 | 36 |
oral opening | 2.29e-07 | 22 |
chorion | 2.38e-07 | 7 |
saliva-secreting gland | 3.79e-07 | 6 |
gland of oral region | 3.79e-07 | 6 |
gland of foregut | 3.79e-07 | 6 |
oral gland | 3.79e-07 | 6 |
oral cavity | 3.79e-07 | 6 |
thoracic segment of trunk | 6.35e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.00e-10 | 106 |
cell type cancer | 1.41e-07 | 143 |
adenocarcinoma | 9.02e-07 | 25 |