FFCP PHASE1:Mm9::chr11:72028487..72028522,-: Difference between revisions
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{{FFCP|EntrezGene=67279|HGNC=|UniProt=|association_with_transcript=32bp_to_ENSMUST00000129264_5end|description=CAGE_peak_2_at_Med31_5end|id=chr11:72028487..72028522,-|ontology_enrichment_celltype=CL:0000540!1.10e-12!33;CL:0000047!1.10e-12!33;CL:0000031!1.10e-12!33;CL:0000404!1.10e-12!33;CL:0000393!6.69e-12!39;CL:0000211!6.69e-12!39;CL:0000221!8.20e-12!44;CL:0000133!8.20e-12!44;CL:0000117!8.90e-12!23;CL:0000337!8.90e-12!23;CL:0002319!9.87e-12!43;CL:0000055!2.70e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.10e-12,33;CL:0000047,1.10e-12,33;CL:0000031,1.10e-12,33;CL:0000404,1.10e-12,33;CL:0000393,6.69e-12,39;CL:0000211,6.69e-12,39;CL:0000221,8.20e-12,44;CL:0000133,8.20e-12,44;CL:0000117,8.90e-12,23;CL:0000337,8.90e-12,23;CL:0002319,9.87e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.18e-24!73;UBERON:0005743!8.18e-24!73;UBERON:0000073!3.09e-23!75;UBERON:0001016!3.09e-23!75;UBERON:0002346!3.67e-20!71;UBERON:0003075!3.67e-20!71;UBERON:0007284!3.67e-20!71;UBERON:0001049!5.10e-20!52;UBERON:0005068!5.10e-20!52;UBERON:0006241!5.10e-20!52;UBERON:0007135!5.10e-20!52;UBERON:0000955!5.22e-20!50;UBERON:0006238!5.22e-20!50;UBERON:0002616!1.09e-19!49;UBERON:0000033!2.02e-19!63;UBERON:0004121!1.58e-17!102;UBERON:0000924!1.58e-17!102;UBERON:0006601!1.58e-17!102;UBERON:0003056!2.55e-17!49;UBERON:0003080!5.15e-17!40;UBERON:0002780!1.19e-16!39;UBERON:0001890!1.19e-16!39;UBERON:0006240!1.19e-16!39;UBERON:0002020!1.28e-14!34;UBERON:0002791!1.55e-13!29;UBERON:0003528!1.55e-13!29;UBERON:0001893!1.55e-13!29;UBERON:0000153!2.58e-10!94;UBERON:0007811!1.75e-09!86;UBERON:0000956!2.50e-09!21;UBERON:0001869!2.50e-09!21;UBERON:0000203!2.50e-09!21;UBERON:0002619!3.11e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.18e-24,73;UBERON:0001016,3.09e-23,75;UBERON:0002346,1.44e-21,64;UBERON:0003075,1.44e-21,64;UBERON:0007284,1.44e-21,64;UBERON:0000073,5.52e-21,54;UBERON:0001049,5.10e-20,52;UBERON:0005068,5.10e-20,52;UBERON:0006241,5.10e-20,52;UBERON:0007135,5.10e-20,52;UBERON:0000955,7.54e-19,47;UBERON:0006238,7.54e-19,47;UBERON:0002616,1.55e-18,46;UBERON:0004121,3.71e-18,95;UBERON:0000924,3.71e-18,95;UBERON:0006601,3.71e-18,95;UBERON:0010371,9.41e-18,73;UBERON:0003056,2.55e-17,49;UBERON:0003080,5.15e-17,40;UBERON:0002780,1.19e-16,39;UBERON:0001890,1.19e-16,39;UBERON:0006240,1.19e-16,39;UBERON:0002020,1.28e-14,34;UBERON:0003528,1.55e-13,29;UBERON:0002791,1.55e-13,29;UBERON:0001893,1.55e-13,29;UBERON:0010314,5.48e-13,92;UBERON:0000956,2.50e-09,21;UBERON:0001869,2.50e-09,21;UBERON:0000203,2.50e-09,21;UBERON:0002619,3.11e-07,17|phase1_expression=11.2104192973356,2.09385244583617,3.63999391511629,1.51232105653415,1.00179145989269,1.00727563147134,2.80335168714631,3.09895976259783,1.54867594366833,1.40438715793196,2.39705155515707,2.95156988282745,2.9104124088305,3.14713448708391,2.6648780945253,2.22722794128809,1.39912375625629,4.41647031501533,3.97631857456642,5.09267582157636,7.82398269389842,4.46809280403984,5.22399578277871,2.55987876469451,2.52350209173887,4.01962374880514,3.4460959692726,3.23206849028834,2.28028103347649,3.52842181663903,5.32153225572731,5.71527606113668,4.92051830067656,0,2.88851619751275,4.48833542467929,2.6542016314108,17.1597968602132,20.3147189576188,16.2292360631877,15.8822501768374,8.87959130445979,18.4493934151838,7.67970589651021,7.70464677268311,8.81024410376071,5.47673941043627,6.97680500417429,7.0299578475031,5.63846707315422,4.61955191363696,1.43752564364972,4.19456515144341,1.45072428402269,0.672187598284928,3.08711323243136,2.29226751951005,3.09403255366465,13.9598357993122,12.1667925232568,15.2119536841483,1.35537812827653,1.77858959222228,2.6996991518442,1.97773272513395,4.2628806896766,4.49400165777607,3.84218305321555,9.53944433237994,9.04539786822327,13.2504725651371,5.71301968807607,6.40518768759679,13.1065155160001,13.4183659425531,18.3843757322004,7.70811166995721,7.53355294702608,6.60508093001847,13.7161739239402,12.7167824607349,9.89735404057844,10.3297709630511,13.5063026407603,7.18151764551008,5.89257170947335,4.8406371471695,9.50637173709033,3.48340489332647,3.85414956544606,5.79728977403356,4.30211938490693,3.39985666853875,1.61910957491345,3.24888208723835,3.13618820968135,3.23022166303029,4.60161870960756,4.1565760736459,2.47337702157238,4.92951969218382,2.56652954828636,0,0,8.44315059943735,9.62767488805375,5.05524445014783,2.8545969929765,2.33044095282455,3.41416919849097,3.46970653532272,5.1759131313064,4.61230994512117,4.82312449768392,3.41007250693544,3.14166478324189,1.97755974187499,3.61498392299779,2.65383165584962,1.13236794963186,1.98757366614354,1.45462575940567,1.86391761218122,8.19786231632332,5.02672096352292,3.83185582812887,4.91242010474273,4.79922184794726,5.71816021828791,7.18995069143149,7.77751024791665,10.0523481690292,10.9509321721134,9.46147192122223,7.48036960414416,6.65189178577806,2.54598409625791,2.86136032403214,7.32895999457657,2.31486041475121,6.76626303406059,11.9549094305406,7.562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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67279 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=32bp_to_ENSMUST00000129264_5end | |||
|cluster_id=chr11:72028487..72028522,- | |||
|description=CAGE_peak_2_at_Med31_5end | |||
|id=chr11:72028487..72028522,- | |||
|ontology_enrichment_celltype=CL:0000540!1.10e-12!33;CL:0000047!1.10e-12!33;CL:0000031!1.10e-12!33;CL:0000404!1.10e-12!33;CL:0000393!6.69e-12!39;CL:0000211!6.69e-12!39;CL:0000221!8.20e-12!44;CL:0000133!8.20e-12!44;CL:0000117!8.90e-12!23;CL:0000337!8.90e-12!23;CL:0002319!9.87e-12!43;CL:0000055!2.70e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.10e-12,33;CL:0000047,1.10e-12,33;CL:0000031,1.10e-12,33;CL:0000404,1.10e-12,33;CL:0000393,6.69e-12,39;CL:0000211,6.69e-12,39;CL:0000221,8.20e-12,44;CL:0000133,8.20e-12,44;CL:0000117,8.90e-12,23;CL:0000337,8.90e-12,23;CL:0002319,9.87e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.18e-24!73;UBERON:0005743!8.18e-24!73;UBERON:0000073!3.09e-23!75;UBERON:0001016!3.09e-23!75;UBERON:0002346!3.67e-20!71;UBERON:0003075!3.67e-20!71;UBERON:0007284!3.67e-20!71;UBERON:0001049!5.10e-20!52;UBERON:0005068!5.10e-20!52;UBERON:0006241!5.10e-20!52;UBERON:0007135!5.10e-20!52;UBERON:0000955!5.22e-20!50;UBERON:0006238!5.22e-20!50;UBERON:0002616!1.09e-19!49;UBERON:0000033!2.02e-19!63;UBERON:0004121!1.58e-17!102;UBERON:0000924!1.58e-17!102;UBERON:0006601!1.58e-17!102;UBERON:0003056!2.55e-17!49;UBERON:0003080!5.15e-17!40;UBERON:0002780!1.19e-16!39;UBERON:0001890!1.19e-16!39;UBERON:0006240!1.19e-16!39;UBERON:0002020!1.28e-14!34;UBERON:0002791!1.55e-13!29;UBERON:0003528!1.55e-13!29;UBERON:0001893!1.55e-13!29;UBERON:0000153!2.58e-10!94;UBERON:0007811!1.75e-09!86;UBERON:0000956!2.50e-09!21;UBERON:0001869!2.50e-09!21;UBERON:0000203!2.50e-09!21;UBERON:0002619!3.11e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.18e-24,73;UBERON:0001016,3.09e-23,75;UBERON:0002346,1.44e-21,64;UBERON:0003075,1.44e-21,64;UBERON:0007284,1.44e-21,64;UBERON:0000073,5.52e-21,54;UBERON:0001049,5.10e-20,52;UBERON:0005068,5.10e-20,52;UBERON:0006241,5.10e-20,52;UBERON:0007135,5.10e-20,52;UBERON:0000955,7.54e-19,47;UBERON:0006238,7.54e-19,47;UBERON:0002616,1.55e-18,46;UBERON:0004121,3.71e-18,95;UBERON:0000924,3.71e-18,95;UBERON:0006601,3.71e-18,95;UBERON:0010371,9.41e-18,73;UBERON:0003056,2.55e-17,49;UBERON:0003080,5.15e-17,40;UBERON:0002780,1.19e-16,39;UBERON:0001890,1.19e-16,39;UBERON:0006240,1.19e-16,39;UBERON:0002020,1.28e-14,34;UBERON:0003528,1.55e-13,29;UBERON:0002791,1.55e-13,29;UBERON:0001893,1.55e-13,29;UBERON:0010314,5.48e-13,92;UBERON:0000956,2.50e-09,21;UBERON:0001869,2.50e-09,21;UBERON:0000203,2.50e-09,21;UBERON:0002619,3.11e-07,17 | |||
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| |||
|short_description=p2@Med31 | |||
}} |
Latest revision as of 15:27, 25 September 2015
Short description: | p2@Med31 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Med31_5end |
Coexpression cluster: | NA |
Association with transcript: | 32bp_to_ENSMUST00000129264_5end |
EntrezGene: | Med31 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.10e-12 | 33 |
neuronal stem cell | 1.10e-12 | 33 |
neuroblast | 1.10e-12 | 33 |
electrically signaling cell | 1.10e-12 | 33 |
electrically responsive cell | 6.69e-12 | 39 |
electrically active cell | 6.69e-12 | 39 |
ectodermal cell | 8.20e-12 | 44 |
neurectodermal cell | 8.20e-12 | 44 |
CNS neuron (sensu Vertebrata) | 8.90e-12 | 23 |
neuroblast (sensu Vertebrata) | 8.90e-12 | 23 |
neural cell | 9.87e-12 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.18e-24 | 73 |
nervous system | 3.09e-23 | 75 |
neurectoderm | 1.44e-21 | 64 |
neural plate | 1.44e-21 | 64 |
presumptive neural plate | 1.44e-21 | 64 |
regional part of nervous system | 5.52e-21 | 54 |
neural tube | 5.10e-20 | 52 |
neural rod | 5.10e-20 | 52 |
future spinal cord | 5.10e-20 | 52 |
neural keel | 5.10e-20 | 52 |
brain | 7.54e-19 | 47 |
future brain | 7.54e-19 | 47 |
regional part of brain | 1.55e-18 | 46 |
ectoderm-derived structure | 3.71e-18 | 95 |
ectoderm | 3.71e-18 | 95 |
presumptive ectoderm | 3.71e-18 | 95 |
ecto-epithelium | 9.41e-18 | 73 |
pre-chordal neural plate | 2.55e-17 | 49 |
anterior neural tube | 5.15e-17 | 40 |
regional part of forebrain | 1.19e-16 | 39 |
forebrain | 1.19e-16 | 39 |
future forebrain | 1.19e-16 | 39 |
gray matter | 1.28e-14 | 34 |
brain grey matter | 1.55e-13 | 29 |
regional part of telencephalon | 1.55e-13 | 29 |
telencephalon | 1.55e-13 | 29 |
structure with developmental contribution from neural crest | 5.48e-13 | 92 |
cerebral cortex | 2.50e-09 | 21 |
cerebral hemisphere | 2.50e-09 | 21 |
pallium | 2.50e-09 | 21 |
regional part of cerebral cortex | 3.11e-07 | 17 |