FFCP PHASE1:Hg19::chr2:60754889..60754902,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=447bp_to_uc002sag.2_5end | |||
|cluster_id=chr2:60754889..60754902,- | |||
|coexpression_cluster_id=C439 | |||
|description=CAGE_peak_2_at_uc002sag.2_5end | |||
|id=chr2:60754889..60754902,- | |||
|ontology_enrichment_celltype=CL:0002194!5.56e-31!63;CL:0000576!5.56e-31!63;CL:0000040!5.56e-31!63;CL:0000559!5.56e-31!63;CL:0002009!8.92e-30!65;CL:0000839!4.61e-27!70;CL:0000557!1.45e-26!71;CL:0000766!2.81e-24!76;CL:0000763!4.26e-19!112;CL:0000049!4.26e-19!112;CL:0002057!7.64e-19!42;CL:0000860!3.09e-17!45;CL:0002087!1.31e-12!119;CL:0002031!8.63e-12!124;CL:0000235!3.07e-10!10;CL:0002032!3.99e-10!165;CL:0000837!3.99e-10!165;CL:0000738!1.39e-09!140;CL:0000037!2.25e-09!172;CL:0000566!2.25e-09!172;CL:0000988!2.08e-08!182 | |||
|ontology_enrichment_celltype_v019=CL:0000235;3.17e-74;6!CL:0000473;3.36e-29;39!CL:0000234;3.36e-29;39!CL:0000346;1.51e-17;3!CL:1000428;1.51e-17;3!CL:0002559;6.46e-11;5!CL:0000766;2.85e-10;69!CL:0000860;5.65e-08;33!CL:0002057;5.65e-08;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,4.08e-74,6;CL:0000473,7.56e-30,48;CL:0000234,7.56e-30,48;CL:0002194,1.24e-23,59;CL:0000576,1.24e-23,59;CL:0000040,1.24e-23,59;CL:0000559,1.24e-23,59;CL:0002009,7.88e-23,61;CL:0000839,4.95e-21,66;CL:0000557,1.05e-20,67;CL:0000766,3.38e-19,72;CL:0000346,1.94e-17,3;CL:1000428,1.94e-17,3;CL:0000763,6.02e-15,108;CL:0000049,6.02e-15,108;CL:0002087,1.39e-11,115;CL:0002031,4.79e-11,120;CL:0002559,7.51e-11,5;CL:0000738,1.37e-09,136;CL:0002032,1.49e-09,161;CL:0000837,1.49e-09,161;CL:0000037,4.32e-09,168;CL:0000988,1.50e-08,177;CL:0000860,2.74e-07,42;CL:0002057,2.74e-07,42;CL:0000134,3.77e-07,354;CL:0002320,5.67e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.18e-22!80;UBERON:0001474!2.83e-22!86;UBERON:0004765!1.69e-20!101;UBERON:0001434!1.69e-20!101;UBERON:0002390!1.54e-18!102;UBERON:0003061!1.54e-18!102;UBERON:0002193!4.02e-16!112;UBERON:0002619!1.67e-15!22;UBERON:0002405!1.76e-15!115;UBERON:0001950!1.53e-14!20;UBERON:0000956!2.32e-13!25;UBERON:0000203!2.32e-13!25;UBERON:0001869!2.78e-13!32;UBERON:0001893!2.55e-12!34;UBERON:0002791!4.45e-11!33;UBERON:0002020!1.14e-10!34;UBERON:0003528!1.14e-10!34;UBERON:0002204!9.17e-10!167;UBERON:0002780!1.10e-09!41;UBERON:0001890!1.10e-09!41;UBERON:0006240!1.10e-09!41;UBERON:0003080!2.22e-09!42;UBERON:0001049!3.35e-08!57;UBERON:0005068!3.35e-08!57;UBERON:0006241!3.35e-08!57;UBERON:0007135!3.35e-08!57;UBERON:0000062!5.62e-07!511;UBERON:0002616!9.93e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;1.51e-17;3!UBERON:0001992;1.51e-17;3!UBERON:0002073;6.46e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,4.61e-20,82;UBERON:0004765,3.58e-18,90;UBERON:0002371,3.92e-18,76;UBERON:0000412,1.94e-17,3;UBERON:0001992,1.94e-17,3;UBERON:0001434,3.15e-16,100;UBERON:0002405,1.30e-14,93;UBERON:0002390,8.30e-14,98;UBERON:0003061,8.30e-14,98;UBERON:0002193,2.05e-12,108;UBERON:0002073,7.51e-11,5;UBERON:0005086,7.51e-11,5;UBERON:0002204,3.83e-09,167;UBERON:0002384,9.92e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.647787332037959,0,0,0,0,0,0.411167888021826,0.929119112685311,0,0.256160706529101,0.709446689665756,0.689491361473237,1.93645405075148,1.35426486594342,0.188242339542605,0,0.449446968890169,0,0.962787081228281,0,0,0,0,0.870627715885752,0.56738522469114,1.86846674698672,0.502497330513487,0,0.217188844705117,0.605399502633369,2.20966581592539,1.58231193720442,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0,0,0,0.989067717114227,0,0,0,0,0,0,0,0.150238058906597,0,0.179389635688862,2.13557388818567,0,0,0.103052529238439,0,0,0,0,0,0.460249493211497,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,3.12899064659632,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47730203652438,3.51006397708857,2.67536092119711,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86495122564762,1.00451418286425,8.43335757932127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0.851692475380653,14.7707298244979,0.307240764308458,0.223676107892416,0,0.586164286206121,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0.853533837553127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,3.58049199809294,0,0.20170506870352,0,0,0,0,0.0675375846183947,0.781078098613847,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p2@uc002sag.2 | |||
}} |
Latest revision as of 11:09, 29 July 2015
Short description: | p2@uc002sag.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc002sag.2_5end |
Coexpression cluster: | C439_acute_CD14_Macrophage_biphenotypic_neuroblastoma_Monocytederived_myelodysplastic |
Association with transcript: | 447bp_to_uc002sag.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 4.08e-74 | 6 |
defensive cell | 7.56e-30 | 48 |
phagocyte | 7.56e-30 | 48 |
monopoietic cell | 1.24e-23 | 59 |
monocyte | 1.24e-23 | 59 |
monoblast | 1.24e-23 | 59 |
promonocyte | 1.24e-23 | 59 |
macrophage dendritic cell progenitor | 7.88e-23 | 61 |
myeloid lineage restricted progenitor cell | 4.95e-21 | 66 |
granulocyte monocyte progenitor cell | 1.05e-20 | 67 |
myeloid leukocyte | 3.38e-19 | 72 |
hair follicle dermal papilla cell | 1.94e-17 | 3 |
stem cell of epidermis | 1.94e-17 | 3 |
myeloid cell | 6.02e-15 | 108 |
common myeloid progenitor | 6.02e-15 | 108 |
nongranular leukocyte | 1.39e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 4.79e-11 | 120 |
hair follicle cell | 7.51e-11 | 5 |
leukocyte | 1.37e-09 | 136 |
hematopoietic oligopotent progenitor cell | 1.49e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.49e-09 | 161 |
hematopoietic stem cell | 4.32e-09 | 168 |
hematopoietic cell | 1.50e-08 | 177 |
classical monocyte | 2.74e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.74e-07 | 42 |
mesenchymal cell | 3.77e-07 | 354 |
connective tissue cell | 5.67e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone element | 4.61e-20 | 82 |
skeletal element | 3.58e-18 | 90 |
bone marrow | 3.92e-18 | 76 |
dermal papilla | 1.94e-17 | 3 |
papillary layer of dermis | 1.94e-17 | 3 |
skeletal system | 3.15e-16 | 100 |
immune system | 1.30e-14 | 93 |
hematopoietic system | 8.30e-14 | 98 |
blood island | 8.30e-14 | 98 |
hemolymphoid system | 2.05e-12 | 108 |
hair follicle | 7.51e-11 | 5 |
hair follicle placode | 7.51e-11 | 5 |
musculoskeletal system | 3.83e-09 | 167 |
connective tissue | 9.92e-07 | 371 |