FFCP PHASE1:Mm9::chr11:116274279..116274314,-: Difference between revisions
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{{FFCP|EntrezGene=217340|HGNC=|MCL_coexpression_id=1|UniProt=A2AAN9,A2AAP0|association_with_transcript=3bp_to_ENSMUST00000100202,ENSMUST00000106398_5end|description=CAGE_peak_2_at_Rnf157_5end|id=chr11:116274279..116274314,-|ontology_enrichment_celltype=CL:0000540!2.33e-14!33;CL:0000047!2.33e-14!33;CL:0000031!2.33e-14!33;CL:0000404!2.33e-14!33;CL:0000221!7.45e-13!44;CL:0000133!7.45e-13!44;CL:0002319!8.21e-13!43;CL:0000117!8.85e-13!23;CL:0000337!8.85e-13!23;CL:0000393!5.51e-10!39;CL:0000211!5.51e-10!39;CL:0000055!8.64e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.89e-14,33;CL:0000047,1.89e-14,33;CL:0000031,1.89e-14,33;CL:0000404,1.89e-14,33;CL:0000221,6.18e-13,44;CL:0000133,6.18e-13,44;CL:0002319,6.81e-13,43;CL:0000117,7.34e-13,23;CL:0000337,7.34e-13,23;CL:0000393,3.62e-10,39;CL:0000211,3.62e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.56e-28!73;UBERON:0005743!5.56e-28!73;UBERON:0000073!1.00e-27!75;UBERON:0001016!1.00e-27!75;UBERON:0004121!1.64e-22!102;UBERON:0000924!1.64e-22!102;UBERON:0006601!1.64e-22!102;UBERON:0002346!6.22e-22!71;UBERON:0003075!6.22e-22!71;UBERON:0007284!6.22e-22!71;UBERON:0001049!1.60e-21!52;UBERON:0005068!1.60e-21!52;UBERON:0006241!1.60e-21!52;UBERON:0007135!1.60e-21!52;UBERON:0000033!1.62e-21!63;UBERON:0000955!4.20e-20!50;UBERON:0006238!4.20e-20!50;UBERON:0002616!2.16e-19!49;UBERON:0003056!5.52e-19!49;UBERON:0000153!1.69e-18!94;UBERON:0002020!3.80e-18!34;UBERON:0007811!1.07e-17!86;UBERON:0003080!6.44e-16!40;UBERON:0002780!2.80e-15!39;UBERON:0001890!2.80e-15!39;UBERON:0006240!2.80e-15!39;UBERON:0002791!5.76e-15!29;UBERON:0003528!5.76e-15!29;UBERON:0001893!5.76e-15!29;UBERON:0000956!7.29e-11!21;UBERON:0001869!7.29e-11!21;UBERON:0000203!7.29e-11!21;UBERON:0002619!8.93e-09!17;UBERON:0002021!2.43e-07!10;UBERON:0000411!2.43e-07!10;UBERON:0001950!2.43e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.58e-28,73;UBERON:0001016,6.49e-28,75;UBERON:0002346,9.73e-26,64;UBERON:0003075,9.73e-26,64;UBERON:0007284,9.73e-26,64;UBERON:0004121,2.42e-25,95;UBERON:0000924,2.42e-25,95;UBERON:0006601,2.42e-25,95;UBERON:0000073,7.74e-23,54;UBERON:0001049,1.15e-21,52;UBERON:0005068,1.15e-21,52;UBERON:0006241,1.15e-21,52;UBERON:0007135,1.15e-21,52;UBERON:0010371,3.40e-21,73;UBERON:0003056,4.13e-19,49;UBERON:0000955,2.26e-18,47;UBERON:0006238,2.26e-18,47;UBERON:0002020,2.89e-18,34;UBERON:0002616,1.13e-17,46;UBERON:0003080,5.07e-16,40;UBERON:0002780,2.23e-15,39;UBERON:0001890,2.23e-15,39;UBERON:0006240,2.23e-15,39;UBERON:0003528,4.61e-15,29;UBERON:0002791,4.61e-15,29;UBERON:0001893,4.61e-15,29;UBERON:0010314,3.28e-13,92;UBERON:0000956,6.25e-11,21;UBERON:0001869,6.25e-11,21;UBERON:0000203,6.25e-11,21;UBERON:0002619,7.92e-09,17;UBERON:0002021,2.21e-07,10;UBERON:0000411,2.21e-07,10;UBERON:0001950,2.21e-07,10|phase1_expression=8.64803774365887,0,0,0,0,2.18243053485457,0.700837921786577,2.45334314538995,29.8472090961533,39.0887758957729,13.0125655851384,18.028507932946,0.684802919724823,1.22388563386596,0.999329285446988,1.61980213911861,2.09868563438444,11.0411757875383,7.81552271552711,10.6097412949508,10.4603246885816,10.8227136808965,16.7167865048919,1.27993938234725,1.60586496747019,0.57423196411502,0.430761996159075,1.29282739611533,0,0.252030129759931,1.77384408524244,4.44521471421742,5.53558308826113,0,0.288851619751275,0.997407872150954,1.63335485009895,0,0,0.523523743973798,0,0.683045484958446,0,2.14024590558481,2.43304634926835,2.75320128242522,3.12956537739216,4.36050312760893,3.07560655828261,4.86074747685709,4.33957907038624,2.87505128729943,9.39582593923324,3.62681071005672,4.7053131879945,0.257259436035947,1.14613375975503,0,23.0640765379941,16.398720357433,14.5781222806421,1.69422266034566,0,4.94944844504769,2.96659908770092,1.4209602298922,7.49000276296012,16.5213871288268,28.9294018340653,30.9163598779572,26.9215950529769,75.9831618514118,58.7510318931292,18.3736198822431,18.9774032616108,18.3843757322004,42.9451935897616,57.5869894764197,48.2324514424605,23.3438729282443,24.2442255546386,28.6502353806218,50.5321228192499,14.6318278608237,33.3100180153446,51.2653738724182,49.9724599604851,42.4990736481685,2.95332153999418,7.63272757078534,5.2175607966302,0.860423876981386,0,0,0,0,3.7919993435573,0.852151612890289,0.519572009205738,0,6.76048414928066,1.28326477414318,0,0,0.865964164044856,0.760079596425296,2.02209778005913,2.39786147410026,4.91981978929626,1.63286352971307,3.99016251562112,2.74018930480927,2.53677046981664,2.41156224884196,2.4693628498498,1.38233250462643,6.92145909656247,0.433798070759735,0,5.17653919831709,4.63767188766826,1.93950101254089,0,18.1524094147159,14.8707161837553,1.02182822083437,3.35482348616577,2.99951365496704,2.03312363316904,55.8719084979989,53.5275705297793,48.2512712113399,66.2270659932573,65.9745879912253,52.3625872290091,46.2387599743109,7.63795228877372,3.85661608891288,6.57079171927554,13.6787206326208,6.50602214813519,8.27647575960503,14.4049703844279,10.0972227949929,17.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=217340 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=A2AAN9,A2AAP0 | |||
|association_with_transcript=3bp_to_ENSMUST00000100202,ENSMUST00000106398_5end | |||
|cluster_id=chr11:116274279..116274314,- | |||
|description=CAGE_peak_2_at_Rnf157_5end | |||
|id=chr11:116274279..116274314,- | |||
|ontology_enrichment_celltype=CL:0000540!2.33e-14!33;CL:0000047!2.33e-14!33;CL:0000031!2.33e-14!33;CL:0000404!2.33e-14!33;CL:0000221!7.45e-13!44;CL:0000133!7.45e-13!44;CL:0002319!8.21e-13!43;CL:0000117!8.85e-13!23;CL:0000337!8.85e-13!23;CL:0000393!5.51e-10!39;CL:0000211!5.51e-10!39;CL:0000055!8.64e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.89e-14,33;CL:0000047,1.89e-14,33;CL:0000031,1.89e-14,33;CL:0000404,1.89e-14,33;CL:0000221,6.18e-13,44;CL:0000133,6.18e-13,44;CL:0002319,6.81e-13,43;CL:0000117,7.34e-13,23;CL:0000337,7.34e-13,23;CL:0000393,3.62e-10,39;CL:0000211,3.62e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.56e-28!73;UBERON:0005743!5.56e-28!73;UBERON:0000073!1.00e-27!75;UBERON:0001016!1.00e-27!75;UBERON:0004121!1.64e-22!102;UBERON:0000924!1.64e-22!102;UBERON:0006601!1.64e-22!102;UBERON:0002346!6.22e-22!71;UBERON:0003075!6.22e-22!71;UBERON:0007284!6.22e-22!71;UBERON:0001049!1.60e-21!52;UBERON:0005068!1.60e-21!52;UBERON:0006241!1.60e-21!52;UBERON:0007135!1.60e-21!52;UBERON:0000033!1.62e-21!63;UBERON:0000955!4.20e-20!50;UBERON:0006238!4.20e-20!50;UBERON:0002616!2.16e-19!49;UBERON:0003056!5.52e-19!49;UBERON:0000153!1.69e-18!94;UBERON:0002020!3.80e-18!34;UBERON:0007811!1.07e-17!86;UBERON:0003080!6.44e-16!40;UBERON:0002780!2.80e-15!39;UBERON:0001890!2.80e-15!39;UBERON:0006240!2.80e-15!39;UBERON:0002791!5.76e-15!29;UBERON:0003528!5.76e-15!29;UBERON:0001893!5.76e-15!29;UBERON:0000956!7.29e-11!21;UBERON:0001869!7.29e-11!21;UBERON:0000203!7.29e-11!21;UBERON:0002619!8.93e-09!17;UBERON:0002021!2.43e-07!10;UBERON:0000411!2.43e-07!10;UBERON:0001950!2.43e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.58e-28,73;UBERON:0001016,6.49e-28,75;UBERON:0002346,9.73e-26,64;UBERON:0003075,9.73e-26,64;UBERON:0007284,9.73e-26,64;UBERON:0004121,2.42e-25,95;UBERON:0000924,2.42e-25,95;UBERON:0006601,2.42e-25,95;UBERON:0000073,7.74e-23,54;UBERON:0001049,1.15e-21,52;UBERON:0005068,1.15e-21,52;UBERON:0006241,1.15e-21,52;UBERON:0007135,1.15e-21,52;UBERON:0010371,3.40e-21,73;UBERON:0003056,4.13e-19,49;UBERON:0000955,2.26e-18,47;UBERON:0006238,2.26e-18,47;UBERON:0002020,2.89e-18,34;UBERON:0002616,1.13e-17,46;UBERON:0003080,5.07e-16,40;UBERON:0002780,2.23e-15,39;UBERON:0001890,2.23e-15,39;UBERON:0006240,2.23e-15,39;UBERON:0003528,4.61e-15,29;UBERON:0002791,4.61e-15,29;UBERON:0001893,4.61e-15,29;UBERON:0010314,3.28e-13,92;UBERON:0000956,6.25e-11,21;UBERON:0001869,6.25e-11,21;UBERON:0000203,6.25e-11,21;UBERON:0002619,7.92e-09,17;UBERON:0002021,2.21e-07,10;UBERON:0000411,2.21e-07,10;UBERON:0001950,2.21e-07,10 | |||
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| |||
|short_description=p2@Rnf157 | |||
}} |
Latest revision as of 00:16, 27 September 2015
Short description: | p2@Rnf157 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rnf157_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 3bp_to_ENSMUST00000100202, ENSMUST00000106398_5end |
EntrezGene: | Rnf157 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.89e-14 | 33 |
neuronal stem cell | 1.89e-14 | 33 |
neuroblast | 1.89e-14 | 33 |
electrically signaling cell | 1.89e-14 | 33 |
ectodermal cell | 6.18e-13 | 44 |
neurectodermal cell | 6.18e-13 | 44 |
neural cell | 6.81e-13 | 43 |
CNS neuron (sensu Vertebrata) | 7.34e-13 | 23 |
neuroblast (sensu Vertebrata) | 7.34e-13 | 23 |
electrically responsive cell | 3.62e-10 | 39 |
electrically active cell | 3.62e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.58e-28 | 73 |
nervous system | 6.49e-28 | 75 |
neurectoderm | 9.73e-26 | 64 |
neural plate | 9.73e-26 | 64 |
presumptive neural plate | 9.73e-26 | 64 |
ectoderm-derived structure | 2.42e-25 | 95 |
ectoderm | 2.42e-25 | 95 |
presumptive ectoderm | 2.42e-25 | 95 |
regional part of nervous system | 7.74e-23 | 54 |
neural tube | 1.15e-21 | 52 |
neural rod | 1.15e-21 | 52 |
future spinal cord | 1.15e-21 | 52 |
neural keel | 1.15e-21 | 52 |
ecto-epithelium | 3.40e-21 | 73 |
pre-chordal neural plate | 4.13e-19 | 49 |
brain | 2.26e-18 | 47 |
future brain | 2.26e-18 | 47 |
gray matter | 2.89e-18 | 34 |
regional part of brain | 1.13e-17 | 46 |
anterior neural tube | 5.07e-16 | 40 |
regional part of forebrain | 2.23e-15 | 39 |
forebrain | 2.23e-15 | 39 |
future forebrain | 2.23e-15 | 39 |
brain grey matter | 4.61e-15 | 29 |
regional part of telencephalon | 4.61e-15 | 29 |
telencephalon | 4.61e-15 | 29 |
structure with developmental contribution from neural crest | 3.28e-13 | 92 |
cerebral cortex | 6.25e-11 | 21 |
cerebral hemisphere | 6.25e-11 | 21 |
pallium | 6.25e-11 | 21 |
regional part of cerebral cortex | 7.92e-09 | 17 |
occipital lobe | 2.21e-07 | 10 |
visual cortex | 2.21e-07 | 10 |
neocortex | 2.21e-07 | 10 |