FFCP PHASE1:Mm9::chr11:102179101..102179130,-: Difference between revisions
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{{FFCP|EntrezGene=21429|HGNC=|UniProt=A2AWT6|association_with_transcript=54bp_to_ENSMUST00000107117_5end|description=CAGE_peak_3_at_Ubtf_5end|id=chr11:102179101..102179130,-|ontology_enrichment_celltype=CL:0000221!7.37e-10!44;CL:0000133!7.37e-10!44;CL:0002319!1.57e-09!43;CL:0000117!2.22e-09!23;CL:0000337!2.22e-09!23;CL:0000540!4.03e-09!33;CL:0000047!4.03e-09!33;CL:0000031!4.03e-09!33;CL:0000404!4.03e-09!33;CL:0000393!3.94e-08!39;CL:0000211!3.94e-08!39;CL:0000055!5.40e-08!50|ontology_enrichment_celltype_v019_2=CL:0000221,6.75e-10,44;CL:0000133,6.75e-10,44;CL:0002319,1.44e-09,43;CL:0000117,2.19e-09,23;CL:0000337,2.19e-09,23;CL:0000540,3.68e-09,33;CL:0000047,3.68e-09,33;CL:0000031,3.68e-09,33;CL:0000404,3.68e-09,33;CL:0000393,3.64e-08,39;CL:0000211,3.64e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.21e-21!94;UBERON:0007811!3.42e-21!86;UBERON:0001017!7.11e-16!73;UBERON:0005743!7.11e-16!73;UBERON:0000073!1.02e-15!75;UBERON:0001016!1.02e-15!75;UBERON:0004121!5.48e-15!102;UBERON:0000924!5.48e-15!102;UBERON:0006601!5.48e-15!102;UBERON:0000033!1.00e-14!63;UBERON:0002346!3.78e-14!71;UBERON:0003075!3.78e-14!71;UBERON:0007284!3.78e-14!71;UBERON:0003056!9.99e-14!49;UBERON:0001049!2.05e-12!52;UBERON:0005068!2.05e-12!52;UBERON:0006241!2.05e-12!52;UBERON:0007135!2.05e-12!52;UBERON:0000955!3.41e-12!50;UBERON:0006238!3.41e-12!50;UBERON:0002616!1.12e-11!49;UBERON:0003080!1.93e-10!40;UBERON:0002780!3.23e-10!39;UBERON:0001890!3.23e-10!39;UBERON:0006240!3.23e-10!39;UBERON:0002020!4.99e-09!34;UBERON:0002791!1.93e-07!29;UBERON:0003528!1.93e-07!29;UBERON:0001893!1.93e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.07e-16,95;UBERON:0000924,6.07e-16,95;UBERON:0006601,6.07e-16,95;UBERON:0001017,6.42e-16,73;UBERON:0001016,9.21e-16,75;UBERON:0002346,1.37e-15,64;UBERON:0003075,1.37e-15,64;UBERON:0007284,1.37e-15,64;UBERON:0010371,1.55e-14,73;UBERON:0003056,9.76e-14,49;UBERON:0000073,2.11e-13,54;UBERON:0001049,2.01e-12,52;UBERON:0005068,2.01e-12,52;UBERON:0006241,2.01e-12,52;UBERON:0007135,2.01e-12,52;UBERON:0000955,1.69e-11,47;UBERON:0006238,1.69e-11,47;UBERON:0002616,5.45e-11,46;UBERON:0003080,1.89e-10,40;UBERON:0002780,3.17e-10,39;UBERON:0001890,3.17e-10,39;UBERON:0006240,3.17e-10,39;UBERON:0010314,1.03e-09,92;UBERON:0002020,4.92e-09,34;UBERON:0000153,5.43e-09,43;UBERON:0007811,1.94e-08,36;UBERON:0003528,1.91e-07,29;UBERON:0002791,1.91e-07,29;UBERON:0001893,1.91e-07,29|phase1_expression=4.96461426024861,1.39590163055744,1.81999695755814,4.23449895829562,3.00537437967808,2.35030980676646,1.63528848416868,5.03580961422147,2.956563165185,4.44722600011788,3.93801326918661,1.43589886191606,5.82082481766099,5.50748535239684,2.6648780945253,2.22722794128809,3.49780939064073,1.73504190947031,3.83920414096069,2.97072756258621,1.78590909317247,1.68794617041505,1.56719873483361,2.55987876469451,1.83527424853736,2.29692785646008,1.7230479846363,1.72376986148711,2.09025761402011,1.00812051903972,2.21730510655305,0.635030673459631,0.61506478758457,0,2.02196133825892,1.82858109894342,1.83752420636132,4.60384793810598,1.5626706890476,0,2.35292595212406,2.73218193983378,0.971020706062307,3.27331726736501,2.93993100536592,3.48738829107195,8.60630478782843,3.70642765846759,2.19686182734472,2.72201858703997,2.93971485413261,1.43752564364972,2.85230430298152,6.5282592781021,2.35265659399725,2.82985379639542,1.43266719969378,1.03134418455488,7.08107613008592,6.87688273053643,4.43681982454325,5.08266798103698,8.89294796111139,0.449949858640699,1.97773272513395,1.4209602298922,4.19440154725767,4.99483796918021,5.59923906465779,5.53524347159932,6.94072372459561,3.14216082844184,4.63823935998388,5.87955836231779,6.61333750025831,1.83843757322004,5.50579404996943,3.31987079021488,2.91852413186863,9.10015385338338,8.05091263701205,10.4182674111352,3.35019598801657,3.37657566019008,3.36156145108982,5.59794312399969,4.12877874317399,4.28718725398191,2.57469057332826,2.56943304363071,1.44932244350839,0,0.679971333707751,1.07940638327563,1.94932925234301,0.448026887097336,1.26399978118577,3.40860645156115,4.67614808285164,1.7666978725517,4.22530259330042,1.28326477414318,25.4805239706646,21.3320010945999,0.865964164044856,1.52015919285059,1.51657333504435,1.82694207550496,1.8125651855302,2.67195850316685,3.64319186208885,1.52232739156071,2.7673859670727,2.26083960828934,1.29347577849275,2.38766523526383,1.23597483867187,2.31358971071859,1.76922110389975,3.558870698843,1.54589062922275,1.93950101254089,1.86391761218122,2.92780797011547,2.72280718857492,2.04365644166873,1.91704199209472,1.19980546198682,0.762421362438388,3.44518470631092,3.66000482254901,6.03140890141749,3.12883776346098,2.81287003063364,2.70124457927428,4.2182728397617,3.25885964321012,2.11491850037158,1.76905930903572,1.47309299120532,7.28674480591141,5.28774840196988,8.64298223065676,5.72678307775717,6.93972291343544,6.66191345481219,5.43470002446427,3.3631438196072,5.38919982332106,4.53854592402766,4.75068035242662,3.94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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=21429 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=A2AWT6 | |||
|association_with_transcript=54bp_to_ENSMUST00000107117_5end | |||
|cluster_id=chr11:102179101..102179130,- | |||
|description=CAGE_peak_3_at_Ubtf_5end | |||
|id=chr11:102179101..102179130,- | |||
|ontology_enrichment_celltype=CL:0000221!7.37e-10!44;CL:0000133!7.37e-10!44;CL:0002319!1.57e-09!43;CL:0000117!2.22e-09!23;CL:0000337!2.22e-09!23;CL:0000540!4.03e-09!33;CL:0000047!4.03e-09!33;CL:0000031!4.03e-09!33;CL:0000404!4.03e-09!33;CL:0000393!3.94e-08!39;CL:0000211!3.94e-08!39;CL:0000055!5.40e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.75e-10,44;CL:0000133,6.75e-10,44;CL:0002319,1.44e-09,43;CL:0000117,2.19e-09,23;CL:0000337,2.19e-09,23;CL:0000540,3.68e-09,33;CL:0000047,3.68e-09,33;CL:0000031,3.68e-09,33;CL:0000404,3.68e-09,33;CL:0000393,3.64e-08,39;CL:0000211,3.64e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.21e-21!94;UBERON:0007811!3.42e-21!86;UBERON:0001017!7.11e-16!73;UBERON:0005743!7.11e-16!73;UBERON:0000073!1.02e-15!75;UBERON:0001016!1.02e-15!75;UBERON:0004121!5.48e-15!102;UBERON:0000924!5.48e-15!102;UBERON:0006601!5.48e-15!102;UBERON:0000033!1.00e-14!63;UBERON:0002346!3.78e-14!71;UBERON:0003075!3.78e-14!71;UBERON:0007284!3.78e-14!71;UBERON:0003056!9.99e-14!49;UBERON:0001049!2.05e-12!52;UBERON:0005068!2.05e-12!52;UBERON:0006241!2.05e-12!52;UBERON:0007135!2.05e-12!52;UBERON:0000955!3.41e-12!50;UBERON:0006238!3.41e-12!50;UBERON:0002616!1.12e-11!49;UBERON:0003080!1.93e-10!40;UBERON:0002780!3.23e-10!39;UBERON:0001890!3.23e-10!39;UBERON:0006240!3.23e-10!39;UBERON:0002020!4.99e-09!34;UBERON:0002791!1.93e-07!29;UBERON:0003528!1.93e-07!29;UBERON:0001893!1.93e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.07e-16,95;UBERON:0000924,6.07e-16,95;UBERON:0006601,6.07e-16,95;UBERON:0001017,6.42e-16,73;UBERON:0001016,9.21e-16,75;UBERON:0002346,1.37e-15,64;UBERON:0003075,1.37e-15,64;UBERON:0007284,1.37e-15,64;UBERON:0010371,1.55e-14,73;UBERON:0003056,9.76e-14,49;UBERON:0000073,2.11e-13,54;UBERON:0001049,2.01e-12,52;UBERON:0005068,2.01e-12,52;UBERON:0006241,2.01e-12,52;UBERON:0007135,2.01e-12,52;UBERON:0000955,1.69e-11,47;UBERON:0006238,1.69e-11,47;UBERON:0002616,5.45e-11,46;UBERON:0003080,1.89e-10,40;UBERON:0002780,3.17e-10,39;UBERON:0001890,3.17e-10,39;UBERON:0006240,3.17e-10,39;UBERON:0010314,1.03e-09,92;UBERON:0002020,4.92e-09,34;UBERON:0000153,5.43e-09,43;UBERON:0007811,1.94e-08,36;UBERON:0003528,1.91e-07,29;UBERON:0002791,1.91e-07,29;UBERON:0001893,1.91e-07,29 | |||
|phase1_expression=4.96461426024861,1.39590163055744,1.81999695755814,4.23449895829562,3.00537437967808,2.35030980676646,1.63528848416868,5.03580961422147,2.956563165185,4.44722600011788,3.93801326918661,1.43589886191606,5.82082481766099,5.50748535239684,2.6648780945253,2.22722794128809,3.49780939064073,1.73504190947031,3.83920414096069,2.97072756258621,1.78590909317247,1.68794617041505,1.56719873483361,2.55987876469451,1.83527424853736,2.29692785646008,1.7230479846363,1.72376986148711,2.09025761402011,1.00812051903972,2.21730510655305,0.635030673459631,0.61506478758457,0,2.02196133825892,1.82858109894342,1.83752420636132,4.60384793810598,1.5626706890476,0,2.35292595212406,2.73218193983378,0.971020706062307,3.27331726736501,2.93993100536592,3.48738829107195,8.60630478782843,3.70642765846759,2.19686182734472,2.72201858703997,2.93971485413261,1.43752564364972,2.85230430298152,6.5282592781021,2.35265659399725,2.82985379639542,1.43266719969378,1.03134418455488,7.08107613008592,6.87688273053643,4.43681982454325,5.08266798103698,8.89294796111139,0.449949858640699,1.97773272513395,1.4209602298922,4.19440154725767,4.99483796918021,5.59923906465779,5.53524347159932,6.94072372459561,3.14216082844184,4.63823935998388,5.87955836231779,6.61333750025831,1.83843757322004,5.50579404996943,3.31987079021488,2.91852413186863,9.10015385338338,8.05091263701205,10.4182674111352,3.35019598801657,3.37657566019008,3.36156145108982,5.59794312399969,4.12877874317399,4.28718725398191,2.57469057332826,2.56943304363071,1.44932244350839,0,0.679971333707751,1.07940638327563,1.94932925234301,0.448026887097336,1.26399978118577,3.40860645156115,4.67614808285164,1.7666978725517,4.22530259330042,1.28326477414318,25.4805239706646,21.3320010945999,0.865964164044856,1.52015919285059,1.51657333504435,1.82694207550496,1.8125651855302,2.67195850316685,3.64319186208885,1.52232739156071,2.7673859670727,2.26083960828934,1.29347577849275,2.38766523526383,1.23597483867187,2.31358971071859,1.76922110389975,3.558870698843,1.54589062922275,1.93950101254089,1.86391761218122,2.92780797011547,2.72280718857492,2.04365644166873,1.91704199209472,1.19980546198682,0.762421362438388,3.44518470631092,3.66000482254901,6.03140890141749,3.12883776346098,2.81287003063364,2.70124457927428,4.2182728397617,3.25885964321012,2.11491850037158,1.76905930903572,1.47309299120532,7.28674480591141,5.28774840196988,8.64298223065676,5.72678307775717,6.93972291343544,6.66191345481219,5.43470002446427,3.3631438196072,5.38919982332106,4.53854592402766,4.75068035242662,3.94552318369635,5.28289773528636,0.696504333044333,1.64625709126355,2.7864797354589,0,1.54408744268829,0.568326998791185,1.65700618028402,1.17263029990548,2.16074473753218,2.60419209143731,1.77087808572663,2.1597395804233,1.16266972375204,2.41446061259657,1.75148013550754,1.81015834904829,1.80584210487005,3.40489000092594,3.36259971078264,2.85415149878366,1.20785776884335,2.3131894342054,5.45394445610208,1.32167513193519,0.793351699990633,3.62590025909898,2.78684006232526,2.06187938115349,3.42861991859682,1.33426826306922,0.951128130562796,3.32170343081158,1.4822905925161,2.5133520880027,1.39269530428806,3.11942539390592,0,1.08069024937347,1.1948476395262,2.65535061334314,1.82797620175566,4.50830942692322,1.83286195060783,2.52138233317913,1.82353131714828,2.84564417059158,3.39503340353085,2.19798218977925,1.48076596706161,1.77871576252289,1.50160595144485,1.37591296579242,2.24862112384854,1.01430060694251,1.20588579876208,2.03700681425136,1.72617682470486,0.648540907100142,1.09824565275233,0,0.744281895337007,1.5601883655728,1.26289438973556,1.07638448113147,0.482443521363367,1.29327233116623,3.03186258832776,2.28150967018836,1.69745085775188,1.64283173801951,2.84760637651087,0.952174563544055,1.75620283072019,2.20689201748667,2.87904096543407,3.34855014180723,1.96635977658886,1.55416483679306,1.01254341007058,0,0,1.96705709207614,1.65562047782839,2.24770825982909,2.69586879162067,3.44263385291018,0.757412781613119,4.41711507182759,0.390438744296638,3.87762115919038,3.10659437338318,2.67358408898873,4.52922449262132,2.02405350837447,2.63030272120181,3.16230222357219,5.78378369559253,3.40656204499845,2.67098405500883,2.28041743095006,2.63952196756057,1.32745138339963,5.34117399540959,2.41858845571801,1.69744571780308,2.06711325016541,2.15204603560749,1.80899805217755,1.09060118843252,1.06949213515416,1.8962205476149,2.10837217149998,3.09406629744561,3.40439605753788,5.76195500900193,6.98536892426874,4.50107773566344,3.54680467284547,4.8159580752559,3.29098041204242,3.34911444026059,2.58138878870081,0.847328283455281,0.661585194164886,3.2977250588296,2.9063596805263,1.32688434841943,1.3130957840345,3.11867709515616,1.45740418314925,2.22510362412612,1.53783792718067,2.47664241555867,1.48155621895769,2.0720530270516,2.46049609897845,2.51655990527175,2.54967644990783,2.51912614182584,1.93479963326193,0,2.68885594543965,2.23651413839534,1.83609079397062,0.836353184057875,1.9652630737156,2.42755823492677,2.72756403893609,2.09404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| |||
|short_description=p3@Ubtf | |||
}} |
Latest revision as of 18:10, 26 September 2015
Short description: | p3@Ubtf |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ubtf_5end |
Coexpression cluster: | NA |
Association with transcript: | 54bp_to_ENSMUST00000107117_5end |
EntrezGene: | Ubtf |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.75e-10 | 44 |
neurectodermal cell | 6.75e-10 | 44 |
neural cell | 1.44e-09 | 43 |
CNS neuron (sensu Vertebrata) | 2.19e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.19e-09 | 23 |
neuron | 3.68e-09 | 33 |
neuronal stem cell | 3.68e-09 | 33 |
neuroblast | 3.68e-09 | 33 |
electrically signaling cell | 3.68e-09 | 33 |
electrically responsive cell | 3.64e-08 | 39 |
electrically active cell | 3.64e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 6.07e-16 | 95 |
ectoderm | 6.07e-16 | 95 |
presumptive ectoderm | 6.07e-16 | 95 |
central nervous system | 6.42e-16 | 73 |
nervous system | 9.21e-16 | 75 |
neurectoderm | 1.37e-15 | 64 |
neural plate | 1.37e-15 | 64 |
presumptive neural plate | 1.37e-15 | 64 |
ecto-epithelium | 1.55e-14 | 73 |
pre-chordal neural plate | 9.76e-14 | 49 |
regional part of nervous system | 2.11e-13 | 54 |
neural tube | 2.01e-12 | 52 |
neural rod | 2.01e-12 | 52 |
future spinal cord | 2.01e-12 | 52 |
neural keel | 2.01e-12 | 52 |
brain | 1.69e-11 | 47 |
future brain | 1.69e-11 | 47 |
regional part of brain | 5.45e-11 | 46 |
anterior neural tube | 1.89e-10 | 40 |
regional part of forebrain | 3.17e-10 | 39 |
forebrain | 3.17e-10 | 39 |
future forebrain | 3.17e-10 | 39 |
structure with developmental contribution from neural crest | 1.03e-09 | 92 |
gray matter | 4.92e-09 | 34 |
anterior region of body | 5.43e-09 | 43 |
craniocervical region | 1.94e-08 | 36 |
brain grey matter | 1.91e-07 | 29 |
regional part of telencephalon | 1.91e-07 | 29 |
telencephalon | 1.91e-07 | 29 |