FFCP PHASE1:Hg19::chr2:30454390..30454409,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81606 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29532 | |||
|TSSclassifier=strong | |||
|UniProt=Q53QV2,B5MC28,B5MCM2,F8WC18 | |||
|association_with_transcript=0bp_to_ENST00000395323,ENST00000404397,ENST00000406087,ENST00000412933,ENST00000464412,NM_030915,uc002rne.2_5end | |||
|cluster_id=chr2:30454390..30454409,+ | |||
|description=CAGE_peak_1_at_LBH_5end | |||
|id=chr2:30454390..30454409,+ | |||
|ontology_enrichment_celltype=CL:0000838!2.24e-10!52;CL:0000542!2.54e-10!53;CL:0000051!2.54e-10!53;CL:0000791!1.87e-09!18;CL:0000789!1.87e-09!18;CL:0002420!1.87e-09!18;CL:0002419!1.87e-09!18;CL:0000790!1.87e-09!18;CL:0000084!7.12e-07!25;CL:0000827!7.12e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.81e-09;18!CL:0000789;1.81e-09;18!CL:0002419;1.81e-09;18!CL:0000084;5.55e-07;25!CL:0000542;5.80e-07;53!CL:0000625;9.94e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.65e-10,52;CL:0000542,1.88e-10,53;CL:0000051,1.88e-10,53;CL:0000791,1.84e-09,18;CL:0000789,1.84e-09,18;CL:0002420,1.84e-09,18;CL:0002419,1.84e-09,18;CL:0000790,1.84e-09,18;CL:0000084,5.69e-07,25;CL:0000827,5.69e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.81e-09;18!CL:0000051;5.80e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p1@LBH | |||
}} |
Latest revision as of 21:52, 16 September 2015
Short description: | p1@LBH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LBH_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000395323, ENST00000404397, ENST00000406087, ENST00000412933, ENST00000464412, NM_030915, uc002rne.2_5end |
EntrezGene: | LBH |
HGNC: | 29532 |
UniProt: | Q53QV2B5MC28B5MCM2F8WC18 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.65e-10 | 52 |
lymphocyte | 1.88e-10 | 53 |
common lymphoid progenitor | 1.88e-10 | 53 |
mature alpha-beta T cell | 1.84e-09 | 18 |
alpha-beta T cell | 1.84e-09 | 18 |
immature T cell | 1.84e-09 | 18 |
mature T cell | 1.84e-09 | 18 |
immature alpha-beta T cell | 1.84e-09 | 18 |
T cell | 5.69e-07 | 25 |
pro-T cell | 5.69e-07 | 25 |