FFCP PHASE1:Mm9::chr10:79763742..79763795,+: Difference between revisions
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{{FFCP|EntrezGene=23805|HGNC=|MCL_coexpression_id=22|UniProt=D3Z3K9,D3Z344|association_with_transcript=0bp_to_ENSMUST00000138909,ENSMUST00000140828_5end|description=CAGE_peak_1_at_Apc2_5end|id=chr10:79763742..79763795,+|ontology_enrichment_celltype=CL:0000540!9.77e-19!33;CL:0000047!9.77e-19!33;CL:0000031!9.77e-19!33;CL:0000404!9.77e-19!33;CL:0000221!9.39e-16!44;CL:0000133!9.39e-16!44;CL:0002319!1.76e-15!43;CL:0000117!3.60e-15!23;CL:0000337!3.60e-15!23;CL:0000393!2.56e-13!39;CL:0000211!2.56e-13!39;CL:0000055!6.49e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,6.46e-23,33;CL:0000047,6.46e-23,33;CL:0000031,6.46e-23,33;CL:0000404,6.46e-23,33;CL:0000117,1.78e-18,23;CL:0000337,1.78e-18,23;CL:0000221,5.39e-18,44;CL:0000133,5.39e-18,44;CL:0002319,1.18e-17,43;CL:0000393,2.24e-17,39;CL:0000211,2.24e-17,39;CL:0002609,3.89e-07,6;CL:0002321,9.62e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.27e-25!73;UBERON:0005743!4.27e-25!73;UBERON:0000073!5.64e-25!75;UBERON:0001016!5.64e-25!75;UBERON:0004121!3.88e-24!102;UBERON:0000924!3.88e-24!102;UBERON:0006601!3.88e-24!102;UBERON:0002346!1.68e-21!71;UBERON:0003075!1.68e-21!71;UBERON:0007284!1.68e-21!71;UBERON:0000033!2.41e-17!63;UBERON:0003056!2.78e-17!49;UBERON:0001049!3.97e-16!52;UBERON:0005068!3.97e-16!52;UBERON:0006241!3.97e-16!52;UBERON:0007135!3.97e-16!52;UBERON:0002020!1.34e-14!34;UBERON:0000955!6.28e-14!50;UBERON:0006238!6.28e-14!50;UBERON:0002616!1.22e-13!49;UBERON:0003080!3.92e-13!40;UBERON:0002780!6.58e-13!39;UBERON:0001890!6.58e-13!39;UBERON:0006240!6.58e-13!39;UBERON:0002791!3.15e-11!29;UBERON:0003528!3.15e-11!29;UBERON:0001893!3.15e-11!29;UBERON:0007811!8.71e-08!86;UBERON:0000956!1.66e-07!21;UBERON:0001869!1.66e-07!21;UBERON:0000203!1.66e-07!21;UBERON:0000153!6.81e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.58e-28,73;UBERON:0001016,3.63e-27,75;UBERON:0004121,1.35e-26,95;UBERON:0000924,1.35e-26,95;UBERON:0006601,1.35e-26,95;UBERON:0002346,2.68e-24,64;UBERON:0003075,2.68e-24,64;UBERON:0007284,2.68e-24,64;UBERON:0010371,9.60e-21,73;UBERON:0003056,2.53e-19,49;UBERON:0000073,2.69e-19,54;UBERON:0001049,2.64e-18,52;UBERON:0005068,2.64e-18,52;UBERON:0006241,2.64e-18,52;UBERON:0007135,2.64e-18,52;UBERON:0002020,2.42e-17,34;UBERON:0010314,7.19e-16,92;UBERON:0003080,5.37e-15,40;UBERON:0002780,1.03e-14,39;UBERON:0001890,1.03e-14,39;UBERON:0006240,1.03e-14,39;UBERON:0000955,1.84e-14,47;UBERON:0006238,1.84e-14,47;UBERON:0002616,4.09e-14,46;UBERON:0003528,3.52e-13,29;UBERON:0002791,3.52e-13,29;UBERON:0001893,3.52e-13,29;UBERON:0000956,1.35e-08,21;UBERON:0001869,1.35e-08,21;UBERON:0000203,1.35e-08,21|phase1_expression=2.40223270657191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.55994568650145,1.43752564364972,0,0,0,0,0,0,100.34896458636,92.5734213726058,82.3980824558033,0,0,0,0,0,2.39680088414724,4.61061966385865,69.9904883082224,75.4683195274151,71.7208118208213,18.852964970651,24.5164080456291,85.0086146551781,121.052829896033,99.2756289538823,2.20231761998777,3.57524546638526,3.99376986466233,91.1334248215639,107.040543014819,105.745414223022,3.90856198601933,1.12552522006336,1.98637722109853,26.2219441071564,34.4539467533829,70.6453899677889,0.075726193333184,0.529000920747499,0,0,0,0,0,0,0,0,0,0,2.53518155598025,0,0,0,0,0,0,0.11418387971906,0,0,2.25530924795977,4.26251669636998,1.38369298353635,1.20578112442098,1.76383060703557,0,0,0.289198713839823,0,0,0,0,0,0.878342391034642,2.09446706813455,0,0,0,0,2.24685959107234,3.20250421973039,73.5077959860257,1.91206752211504,2.55715457330331,3.74018480207208,3.24482526135515,0,0,0,0.631325567659422,1.69156575851515,6.66716102857071,9.18316862007281,9.19299388797862,15.5123218065028,13.1957131893395,7.77724313845749,3.10444044886819,0,0.756424320671277,0.351902248327898,0.219195732427575,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0,0.23674473558521,0,0.154267112887378,0.465067889500816,0,0.233530684734339,0.493679549740441,0.492502392237286,0.324275238183423,0,0,0.134206418760372,2.3131894342054,66.8879980465349,0,0,0.853153002140936,1.16118335930219,1.54640953586512,1.61346819698674,0.889512175379481,0.760902504450237,0.474529061544512,0.494096864172033,0,0,0,0,0,0,0.189667900953082,0.913988100877831,0,0.610953983535943,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0.37898282354097,0.162964976442026,0.339490171550376,0.234690248288502,0.335012514883631,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,2.24770825982909,3.39913891117389,0,0,5.04813151066011,3.90438744296638,2.36965737506079,10.5146271099123,9.80314165962534,10.4738316391868,2.83367491172426,2.04579100537918,1.58115111178609,2.57057053137446,0,0.35613120733451,0.325773918707152,0.164970122972535,0,0.485561272309963,0,0.188605079755898,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,2.88097750450096,2.97524972700335,2.7863814554107,0.709360934569094,2.31879462882692,2.63278432963394,3.04464949114599,1.40803024838226,0.63549621259146,0,0,0,0.0603129249281559,0,0,0,1.8542530201051,0,0,0,0,0,0,0,0,0,0,1.73984796469624,1.21991680276109,0.756037385752609,1.04544148007234,0.436725127492355,0.134864346384821,0.165306911450672,0,0,0,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0,0,0,0,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.34177395402186,3.68260189205742,5.15605962095457,2.92150409984269,2.74033007908257,3.0215755895588,0.675022500231806,3.15224842256954,1.35942722695261,1.55328093525546,8.19920045914996,21.5473431636557,14.3416228833473,8.0225216632537,8.59413966774727,9.19217542250071,5.11167473943715,3.91466608753899,5.77654577265267,4.54854981174835,4.30914809813408,6.79054828989874,6.64854703036165,7.10679191694049,7.40917549527411,5.23923060411381,8.34367146802959,6.36600427530227,9.89006161927936,5.88795680537589,5.48590803816665,5.32427418478012,6.43777712857767,5.81385666529314,5.36423468367385,5.92302255241735,6.76833499629258,4.99832451731901,4.88894809845102,2.24456908663095,3.79632057997357,6.79680928391388,4.91077251803627,6.04253680625267,7.71626443924566,22.7327625923531,4.44470056046276,5.37177635120746,1.3390183244819,0.882365676478062,0.695603506861264|short_description=p1@Apc2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=23805 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z3K9,D3Z344 | |||
|association_with_transcript=0bp_to_ENSMUST00000138909,ENSMUST00000140828_5end | |||
|cluster_id=chr10:79763742..79763795,+ | |||
|description=CAGE_peak_1_at_Apc2_5end | |||
|id=chr10:79763742..79763795,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.77e-19!33;CL:0000047!9.77e-19!33;CL:0000031!9.77e-19!33;CL:0000404!9.77e-19!33;CL:0000221!9.39e-16!44;CL:0000133!9.39e-16!44;CL:0002319!1.76e-15!43;CL:0000117!3.60e-15!23;CL:0000337!3.60e-15!23;CL:0000393!2.56e-13!39;CL:0000211!2.56e-13!39;CL:0000055!6.49e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.46e-23,33;CL:0000047,6.46e-23,33;CL:0000031,6.46e-23,33;CL:0000404,6.46e-23,33;CL:0000117,1.78e-18,23;CL:0000337,1.78e-18,23;CL:0000221,5.39e-18,44;CL:0000133,5.39e-18,44;CL:0002319,1.18e-17,43;CL:0000393,2.24e-17,39;CL:0000211,2.24e-17,39;CL:0002609,3.89e-07,6;CL:0002321,9.62e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.27e-25!73;UBERON:0005743!4.27e-25!73;UBERON:0000073!5.64e-25!75;UBERON:0001016!5.64e-25!75;UBERON:0004121!3.88e-24!102;UBERON:0000924!3.88e-24!102;UBERON:0006601!3.88e-24!102;UBERON:0002346!1.68e-21!71;UBERON:0003075!1.68e-21!71;UBERON:0007284!1.68e-21!71;UBERON:0000033!2.41e-17!63;UBERON:0003056!2.78e-17!49;UBERON:0001049!3.97e-16!52;UBERON:0005068!3.97e-16!52;UBERON:0006241!3.97e-16!52;UBERON:0007135!3.97e-16!52;UBERON:0002020!1.34e-14!34;UBERON:0000955!6.28e-14!50;UBERON:0006238!6.28e-14!50;UBERON:0002616!1.22e-13!49;UBERON:0003080!3.92e-13!40;UBERON:0002780!6.58e-13!39;UBERON:0001890!6.58e-13!39;UBERON:0006240!6.58e-13!39;UBERON:0002791!3.15e-11!29;UBERON:0003528!3.15e-11!29;UBERON:0001893!3.15e-11!29;UBERON:0007811!8.71e-08!86;UBERON:0000956!1.66e-07!21;UBERON:0001869!1.66e-07!21;UBERON:0000203!1.66e-07!21;UBERON:0000153!6.81e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.58e-28,73;UBERON:0001016,3.63e-27,75;UBERON:0004121,1.35e-26,95;UBERON:0000924,1.35e-26,95;UBERON:0006601,1.35e-26,95;UBERON:0002346,2.68e-24,64;UBERON:0003075,2.68e-24,64;UBERON:0007284,2.68e-24,64;UBERON:0010371,9.60e-21,73;UBERON:0003056,2.53e-19,49;UBERON:0000073,2.69e-19,54;UBERON:0001049,2.64e-18,52;UBERON:0005068,2.64e-18,52;UBERON:0006241,2.64e-18,52;UBERON:0007135,2.64e-18,52;UBERON:0002020,2.42e-17,34;UBERON:0010314,7.19e-16,92;UBERON:0003080,5.37e-15,40;UBERON:0002780,1.03e-14,39;UBERON:0001890,1.03e-14,39;UBERON:0006240,1.03e-14,39;UBERON:0000955,1.84e-14,47;UBERON:0006238,1.84e-14,47;UBERON:0002616,4.09e-14,46;UBERON:0003528,3.52e-13,29;UBERON:0002791,3.52e-13,29;UBERON:0001893,3.52e-13,29;UBERON:0000956,1.35e-08,21;UBERON:0001869,1.35e-08,21;UBERON:0000203,1.35e-08,21 | |||
|phase1_expression=2.40223270657191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.55994568650145,1.43752564364972,0,0,0,0,0,0,100.34896458636,92.5734213726058,82.3980824558033,0,0,0,0,0,2.39680088414724,4.61061966385865,69.9904883082224,75.4683195274151,71.7208118208213,18.852964970651,24.5164080456291,85.0086146551781,121.052829896033,99.2756289538823,2.20231761998777,3.57524546638526,3.99376986466233,91.1334248215639,107.040543014819,105.745414223022,3.90856198601933,1.12552522006336,1.98637722109853,26.2219441071564,34.4539467533829,70.6453899677889,0.075726193333184,0.529000920747499,0,0,0,0,0,0,0,0,0,0,2.53518155598025,0,0,0,0,0,0,0.11418387971906,0,0,2.25530924795977,4.26251669636998,1.38369298353635,1.20578112442098,1.76383060703557,0,0,0.289198713839823,0,0,0,0,0,0.878342391034642,2.09446706813455,0,0,0,0,2.24685959107234,3.20250421973039,73.5077959860257,1.91206752211504,2.55715457330331,3.74018480207208,3.24482526135515,0,0,0,0.631325567659422,1.69156575851515,6.66716102857071,9.18316862007281,9.19299388797862,15.5123218065028,13.1957131893395,7.77724313845749,3.10444044886819,0,0.756424320671277,0.351902248327898,0.219195732427575,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0.234526059981096,0,0.23674473558521,0,0.154267112887378,0.465067889500816,0,0.233530684734339,0.493679549740441,0.492502392237286,0.324275238183423,0,0,0.134206418760372,2.3131894342054,66.8879980465349,0,0,0.853153002140936,1.16118335930219,1.54640953586512,1.61346819698674,0.889512175379481,0.760902504450237,0.474529061544512,0.494096864172033,0,0,0,0,0,0,0.189667900953082,0.913988100877831,0,0.610953983535943,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0.37898282354097,0.162964976442026,0.339490171550376,0.234690248288502,0.335012514883631,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,2.24770825982909,3.39913891117389,0,0,5.04813151066011,3.90438744296638,2.36965737506079,10.5146271099123,9.80314165962534,10.4738316391868,2.83367491172426,2.04579100537918,1.58115111178609,2.57057053137446,0,0.35613120733451,0.325773918707152,0.164970122972535,0,0.485561272309963,0,0.188605079755898,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,2.88097750450096,2.97524972700335,2.7863814554107,0.709360934569094,2.31879462882692,2.63278432963394,3.04464949114599,1.40803024838226,0.63549621259146,0,0,0,0.0603129249281559,0,0,0,1.8542530201051,0,0,0,0,0,0,0,0,0,0,1.73984796469624,1.21991680276109,0.756037385752609,1.04544148007234,0.436725127492355,0.134864346384821,0.165306911450672,0,0,0,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0,0,0,0,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.34177395402186,3.68260189205742,5.15605962095457,2.92150409984269,2.74033007908257,3.0215755895588,0.675022500231806,3.15224842256954,1.35942722695261,1.55328093525546,8.19920045914996,21.5473431636557,14.3416228833473,8.0225216632537,8.59413966774727,9.19217542250071,5.11167473943715,3.91466608753899,5.77654577265267,4.54854981174835,4.30914809813408,6.79054828989874,6.64854703036165,7.10679191694049,7.40917549527411,5.23923060411381,8.34367146802959,6.36600427530227,9.89006161927936,5.88795680537589,5.48590803816665,5.32427418478012,6.43777712857767,5.81385666529314,5.36423468367385,5.92302255241735,6.76833499629258,4.99832451731901,4.88894809845102,2.24456908663095,3.79632057997357,6.79680928391388,4.91077251803627,6.04253680625267,7.71626443924566,22.7327625923531,4.44470056046276,5.37177635120746,1.3390183244819,0.882365676478062,0.695603506861264 | |||
|short_description=p1@Apc2 | |||
}} |
Latest revision as of 09:44, 26 September 2015
Short description: | p1@Apc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Apc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000138909, ENSMUST00000140828_5end |
EntrezGene: | Apc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.46e-23 | 33 |
neuronal stem cell | 6.46e-23 | 33 |
neuroblast | 6.46e-23 | 33 |
electrically signaling cell | 6.46e-23 | 33 |
CNS neuron (sensu Vertebrata) | 1.78e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.78e-18 | 23 |
ectodermal cell | 5.39e-18 | 44 |
neurectodermal cell | 5.39e-18 | 44 |
neural cell | 1.18e-17 | 43 |
electrically responsive cell | 2.24e-17 | 39 |
electrically active cell | 2.24e-17 | 39 |
neuron of cerebral cortex | 3.89e-07 | 6 |
embryonic cell | 9.62e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.58e-28 | 73 |
nervous system | 3.63e-27 | 75 |
ectoderm-derived structure | 1.35e-26 | 95 |
ectoderm | 1.35e-26 | 95 |
presumptive ectoderm | 1.35e-26 | 95 |
neurectoderm | 2.68e-24 | 64 |
neural plate | 2.68e-24 | 64 |
presumptive neural plate | 2.68e-24 | 64 |
ecto-epithelium | 9.60e-21 | 73 |
pre-chordal neural plate | 2.53e-19 | 49 |
regional part of nervous system | 2.69e-19 | 54 |
neural tube | 2.64e-18 | 52 |
neural rod | 2.64e-18 | 52 |
future spinal cord | 2.64e-18 | 52 |
neural keel | 2.64e-18 | 52 |
gray matter | 2.42e-17 | 34 |
structure with developmental contribution from neural crest | 7.19e-16 | 92 |
anterior neural tube | 5.37e-15 | 40 |
regional part of forebrain | 1.03e-14 | 39 |
forebrain | 1.03e-14 | 39 |
future forebrain | 1.03e-14 | 39 |
brain | 1.84e-14 | 47 |
future brain | 1.84e-14 | 47 |
regional part of brain | 4.09e-14 | 46 |
brain grey matter | 3.52e-13 | 29 |
regional part of telencephalon | 3.52e-13 | 29 |
telencephalon | 3.52e-13 | 29 |
cerebral cortex | 1.35e-08 | 21 |
cerebral hemisphere | 1.35e-08 | 21 |
pallium | 1.35e-08 | 21 |