FFCP PHASE1:Hg19::chr9:139636433..139636481,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr9:139636433..139636481,-
|short_description=p1@LCN10
|description=CAGE_peak_1_at_LCN10_5end
|association_with_transcript=0bp_to_ENST00000494294,ENST000005290...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=414332 | |EntrezGene=414332 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20892 | |HGNC=20892 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000494294,ENST00000529013_5end | |||
|cluster_id=chr9:139636433..139636481,- | |||
|coexpression_cluster_id=C12 | |||
|description=CAGE_peak_1_at_LCN10_5end | |||
|id=chr9:139636433..139636481,- | |||
|ontology_enrichment_celltype=CL:0000542!1.82e-26!53;CL:0000051!1.82e-26!53;CL:0000838!2.16e-25!52;CL:0000945!1.85e-19!24;CL:0000826!1.85e-19!24;CL:0000236!1.19e-16!14;CL:0000791!1.65e-11!18;CL:0000789!1.65e-11!18;CL:0002420!1.65e-11!18;CL:0002419!1.65e-11!18;CL:0000790!1.65e-11!18;CL:0002087!6.13e-10!119;CL:0000738!1.72e-09!140;CL:0002031!2.90e-09!124;CL:0000084!3.24e-09!25;CL:0000827!3.24e-09!25;CL:0000625!5.00e-09!11;CL:0000080!1.39e-07!6;CL:0000988!6.54e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000236;6.06e-31;13!CL:0000945;1.65e-30;24!CL:0000542;9.37e-12;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,2.15e-33,14;CL:0000945,1.18e-30,24;CL:0000826,1.18e-30,24;CL:0000542,6.02e-18,53;CL:0000051,6.02e-18,53;CL:0000838,1.78e-16,52 | |||
|ontology_enrichment_development_v019=CL:0000051;9.37e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.40e-49!115;UBERON:0000178!7.22e-15!15;UBERON:0000179!7.22e-15!15;UBERON:0000463!7.22e-15!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.69e-19;15!UBERON:0000179;1.69e-19;15!UBERON:0000463;1.69e-19;15!UBERON:0002390;6.61e-11;32!UBERON:0006947;6.89e-09;3!UBERON:0004054;6.89e-09;3!UBERON:0003978;1.23e-08;3!UBERON:0000946;1.23e-08;3!UBERON:0002193;4.60e-07;42!UBERON:0007023;6.27e-07;114!UBERON:0005904;9.42e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.26e-22,114;UBERON:0000178,1.62e-19,15;UBERON:0000179,1.62e-19,15;UBERON:0000463,1.62e-19,15;UBERON:0006947,8.25e-09,3;UBERON:0004054,8.25e-09,3;UBERON:0003978,1.41e-08,3;UBERON:0009751,1.41e-08,3;UBERON:0000946,1.41e-08,3;UBERON:0002523,1.41e-08,3;UBERON:0005983,1.41e-08,3;UBERON:0002165,1.41e-08,3;UBERON:0002062,1.41e-08,3;UBERON:0007280,1.41e-08,3 | |||
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| ||
|short_description=p1@LCN10 | |||
}} | }} |
Latest revision as of 13:00, 16 September 2015
Short description: | p1@LCN10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCN10_5end |
Coexpression cluster: | C12_Mast_Basophils_immature_chorionic_mature_CD14_Eosinophils |
Association with transcript: | 0bp_to_ENST00000494294, ENST00000529013_5end |
EntrezGene: | LCN10 |
HGNC: | 20892 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 2.15e-33 | 14 |
lymphocyte of B lineage | 1.18e-30 | 24 |
pro-B cell | 1.18e-30 | 24 |
lymphocyte | 6.02e-18 | 53 |
common lymphoid progenitor | 6.02e-18 | 53 |
lymphoid lineage restricted progenitor cell | 1.78e-16 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.26e-22 | 114 |
blood | 1.62e-19 | 15 |
haemolymphatic fluid | 1.62e-19 | 15 |
organism substance | 1.62e-19 | 15 |
male genital duct | 8.25e-09 | 3 |
internal male genitalia | 8.25e-09 | 3 |
valve | 1.41e-08 | 3 |
cardiac mesenchyme | 1.41e-08 | 3 |
cardial valve | 1.41e-08 | 3 |
tunica intima | 1.41e-08 | 3 |
heart layer | 1.41e-08 | 3 |
endocardium | 1.41e-08 | 3 |
endocardial cushion | 1.41e-08 | 3 |
presumptive endocardium | 1.41e-08 | 3 |