FFCP PHASE1:Mm9::chr10:63552926..63552940,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=216028|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=54bp_to_ENSMUST00000148712_5end|description=CAGE_peak_5_at_Lrrtm3_5end|id=chr10:63552926..63552940,-|ontology_enrichment_celltype=CL:0000540!1.53e-14!33;CL:0000047!1.53e-14!33;CL:0000031!1.53e-14!33;CL:0000404!1.53e-14!33;CL:0000117!1.18e-13!23;CL:0000337!1.18e-13!23;CL:0000393!4.62e-11!39;CL:0000211!4.62e-11!39;CL:0002319!2.56e-09!43;CL:0000221!6.17e-09!44;CL:0000133!6.17e-09!44;CL:0000055!5.30e-07!50|ontology_enrichment_celltype_v019_2=CL:0002610,3.46e-09,3;CL:0000117,4.79e-08,23;CL:0000337,4.79e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.28e-28!73;UBERON:0005743!1.28e-28!73;UBERON:0000073!2.18e-27!75;UBERON:0001016!2.18e-27!75;UBERON:0001049!1.37e-24!52;UBERON:0005068!1.37e-24!52;UBERON:0006241!1.37e-24!52;UBERON:0007135!1.37e-24!52;UBERON:0002020!2.45e-23!34;UBERON:0000955!3.63e-23!50;UBERON:0006238!3.63e-23!50;UBERON:0002616!4.08e-22!49;UBERON:0002346!3.55e-19!71;UBERON:0003075!3.55e-19!71;UBERON:0007284!3.55e-19!71;UBERON:0002791!9.21e-19!29;UBERON:0003528!9.21e-19!29;UBERON:0001893!9.21e-19!29;UBERON:0004121!7.04e-18!102;UBERON:0000924!7.04e-18!102;UBERON:0006601!7.04e-18!102;UBERON:0000033!1.87e-17!63;UBERON:0003080!1.14e-16!40;UBERON:0002780!8.99e-16!39;UBERON:0001890!8.99e-16!39;UBERON:0006240!8.99e-16!39;UBERON:0003056!1.73e-13!49;UBERON:0002021!2.16e-12!10;UBERON:0000411!2.16e-12!10;UBERON:0001950!2.16e-12!10;UBERON:0000956!5.19e-12!21;UBERON:0001869!5.19e-12!21;UBERON:0000203!5.19e-12!21;UBERON:0007811!4.13e-10!86;UBERON:0002619!1.14e-09!17;UBERON:0003076!1.10e-08!12;UBERON:0003057!1.10e-08!12;UBERON:0000153!2.96e-08!94;UBERON:0002420!3.47e-08!8;UBERON:0007245!3.47e-08!8;UBERON:0010009!3.47e-08!8;UBERON:0010011!3.47e-08!8;UBERON:0000454!3.47e-08!8;UBERON:0002298!5.03e-07!6;UBERON:0002240!6.59e-07!6;UBERON:0005174!6.59e-07!6;UBERON:0001137!6.59e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.78e-36,54;UBERON:0001017,3.45e-32,73;UBERON:0001049,4.26e-32,52;UBERON:0005068,4.26e-32,52;UBERON:0006241,4.26e-32,52;UBERON:0007135,4.26e-32,52;UBERON:0001016,3.51e-31,75;UBERON:0000955,1.93e-30,47;UBERON:0006238,1.93e-30,47;UBERON:0002616,2.54e-28,46;UBERON:0002021,3.04e-28,10;UBERON:0000411,3.04e-28,10;UBERON:0001950,3.04e-28,10;UBERON:0002346,4.32e-25,64;UBERON:0003075,4.32e-25,64;UBERON:0007284,4.32e-25,64;UBERON:0002020,1.35e-23,34;UBERON:0004121,1.98e-23,95;UBERON:0000924,1.98e-23,95;UBERON:0006601,1.98e-23,95;UBERON:0003528,3.02e-22,29;UBERON:0002791,3.02e-22,29;UBERON:0001893,3.02e-22,29;UBERON:0003080,7.44e-22,40;UBERON:0010371,2.41e-21,73;UBERON:0002780,4.59e-20,39;UBERON:0001890,4.59e-20,39;UBERON:0006240,4.59e-20,39;UBERON:0002619,7.27e-19,17;UBERON:0000956,5.77e-18,21;UBERON:0001869,5.77e-18,21;UBERON:0000203,5.77e-18,21;UBERON:0003056,4.47e-17,49;UBERON:0010314,7.82e-16,92;UBERON:0000025,9.70e-12,114;UBERON:0003076,1.14e-10,12;UBERON:0003057,1.14e-10,12;UBERON:0004111,1.29e-10,122;UBERON:0004684,3.46e-09,3;UBERON:0002275,3.46e-09,3;UBERON:0011216,1.77e-08,194;UBERON:0004733,7.65e-08,6;UBERON:0004732,7.65e-08,6;UBERON:0002028,7.65e-08,6;UBERON:0007277,7.65e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,1.26766280701236,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0.210324961351382,0.571301968807607,2.42955395046775,0,0.0958454710182364,0,4.40463523997555,1.78762273319263,2.91852413186863,0.395658863190582,0.365950574409639,1.56274011167028,3.07101298901519,1.12552522006336,0.61119299110724,0.883885756421003,1.99320353118744,0.745597783301202,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,4.09893115816166,7.74952815209784,0,0,0,0,2.69623150928681,3.66000482254901,0.376963056338593,4.86708096538374,4.60287823194595,2.70124457927428,1.78465389374533,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,1.05144974282064,0.308713837137853,0,0,0,0,0,0.201683524623343,0,0.380451252225118,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,1.44495530989013,1.99259867206745,0,0,0.631016438832513,0.390438744296638,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0.395287777946524,3.85585579706168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0.291480836629851,3.33765543618917,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0.165306911450672,0,0.129614973291793,0,0,0.149516546043979,0,0.388902376688095,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,2.76195141904306,3.43737308063638,3.43706364687375,4.11049511862385,7.55393897389701,2.70009000092722,4.5032120322422,4.07828168085784,4.14208249401456,0,0.399024873401031,0.170733605754134,0,0,0,0.222246727801615,0.412070114477788,0.320919209591815,0.758091635291392,0,0.188626341386076,0.280924522409647,0.128050304809739,0.114870937911227,0.476293691283074,0.347652977834566,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0.581385666529314,0.188218760830661,0.169229215783353,0.365855945745545,0,0.271608227691724,0.561142271657738,0,0,0.818462086339379,0.309873682371932,0,0.249810577937946,0,0,0,0,0|short_description=p5@Lrrtm3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=216028 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=54bp_to_ENSMUST00000148712_5end | |||
|cluster_id=chr10:63552926..63552940,- | |||
|description=CAGE_peak_5_at_Lrrtm3_5end | |||
|id=chr10:63552926..63552940,- | |||
|ontology_enrichment_celltype=CL:0000540!1.53e-14!33;CL:0000047!1.53e-14!33;CL:0000031!1.53e-14!33;CL:0000404!1.53e-14!33;CL:0000117!1.18e-13!23;CL:0000337!1.18e-13!23;CL:0000393!4.62e-11!39;CL:0000211!4.62e-11!39;CL:0002319!2.56e-09!43;CL:0000221!6.17e-09!44;CL:0000133!6.17e-09!44;CL:0000055!5.30e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,3.46e-09,3;CL:0000117,4.79e-08,23;CL:0000337,4.79e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.28e-28!73;UBERON:0005743!1.28e-28!73;UBERON:0000073!2.18e-27!75;UBERON:0001016!2.18e-27!75;UBERON:0001049!1.37e-24!52;UBERON:0005068!1.37e-24!52;UBERON:0006241!1.37e-24!52;UBERON:0007135!1.37e-24!52;UBERON:0002020!2.45e-23!34;UBERON:0000955!3.63e-23!50;UBERON:0006238!3.63e-23!50;UBERON:0002616!4.08e-22!49;UBERON:0002346!3.55e-19!71;UBERON:0003075!3.55e-19!71;UBERON:0007284!3.55e-19!71;UBERON:0002791!9.21e-19!29;UBERON:0003528!9.21e-19!29;UBERON:0001893!9.21e-19!29;UBERON:0004121!7.04e-18!102;UBERON:0000924!7.04e-18!102;UBERON:0006601!7.04e-18!102;UBERON:0000033!1.87e-17!63;UBERON:0003080!1.14e-16!40;UBERON:0002780!8.99e-16!39;UBERON:0001890!8.99e-16!39;UBERON:0006240!8.99e-16!39;UBERON:0003056!1.73e-13!49;UBERON:0002021!2.16e-12!10;UBERON:0000411!2.16e-12!10;UBERON:0001950!2.16e-12!10;UBERON:0000956!5.19e-12!21;UBERON:0001869!5.19e-12!21;UBERON:0000203!5.19e-12!21;UBERON:0007811!4.13e-10!86;UBERON:0002619!1.14e-09!17;UBERON:0003076!1.10e-08!12;UBERON:0003057!1.10e-08!12;UBERON:0000153!2.96e-08!94;UBERON:0002420!3.47e-08!8;UBERON:0007245!3.47e-08!8;UBERON:0010009!3.47e-08!8;UBERON:0010011!3.47e-08!8;UBERON:0000454!3.47e-08!8;UBERON:0002298!5.03e-07!6;UBERON:0002240!6.59e-07!6;UBERON:0005174!6.59e-07!6;UBERON:0001137!6.59e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.78e-36,54;UBERON:0001017,3.45e-32,73;UBERON:0001049,4.26e-32,52;UBERON:0005068,4.26e-32,52;UBERON:0006241,4.26e-32,52;UBERON:0007135,4.26e-32,52;UBERON:0001016,3.51e-31,75;UBERON:0000955,1.93e-30,47;UBERON:0006238,1.93e-30,47;UBERON:0002616,2.54e-28,46;UBERON:0002021,3.04e-28,10;UBERON:0000411,3.04e-28,10;UBERON:0001950,3.04e-28,10;UBERON:0002346,4.32e-25,64;UBERON:0003075,4.32e-25,64;UBERON:0007284,4.32e-25,64;UBERON:0002020,1.35e-23,34;UBERON:0004121,1.98e-23,95;UBERON:0000924,1.98e-23,95;UBERON:0006601,1.98e-23,95;UBERON:0003528,3.02e-22,29;UBERON:0002791,3.02e-22,29;UBERON:0001893,3.02e-22,29;UBERON:0003080,7.44e-22,40;UBERON:0010371,2.41e-21,73;UBERON:0002780,4.59e-20,39;UBERON:0001890,4.59e-20,39;UBERON:0006240,4.59e-20,39;UBERON:0002619,7.27e-19,17;UBERON:0000956,5.77e-18,21;UBERON:0001869,5.77e-18,21;UBERON:0000203,5.77e-18,21;UBERON:0003056,4.47e-17,49;UBERON:0010314,7.82e-16,92;UBERON:0000025,9.70e-12,114;UBERON:0003076,1.14e-10,12;UBERON:0003057,1.14e-10,12;UBERON:0004111,1.29e-10,122;UBERON:0004684,3.46e-09,3;UBERON:0002275,3.46e-09,3;UBERON:0011216,1.77e-08,194;UBERON:0004733,7.65e-08,6;UBERON:0004732,7.65e-08,6;UBERON:0002028,7.65e-08,6;UBERON:0007277,7.65e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,1.26766280701236,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0.210324961351382,0.571301968807607,2.42955395046775,0,0.0958454710182364,0,4.40463523997555,1.78762273319263,2.91852413186863,0.395658863190582,0.365950574409639,1.56274011167028,3.07101298901519,1.12552522006336,0.61119299110724,0.883885756421003,1.99320353118744,0.745597783301202,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,4.09893115816166,7.74952815209784,0,0,0,0,2.69623150928681,3.66000482254901,0.376963056338593,4.86708096538374,4.60287823194595,2.70124457927428,1.78465389374533,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,1.05144974282064,0.308713837137853,0,0,0,0,0,0.201683524623343,0,0.380451252225118,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,1.44495530989013,1.99259867206745,0,0,0.631016438832513,0.390438744296638,0,0,0.222798674082394,0.283076530788832,0,0.292255857911312,0.395287777946524,3.85585579706168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0.291480836629851,3.33765543618917,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0.165306911450672,0,0.129614973291793,0,0,0.149516546043979,0,0.388902376688095,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,2.76195141904306,3.43737308063638,3.43706364687375,4.11049511862385,7.55393897389701,2.70009000092722,4.5032120322422,4.07828168085784,4.14208249401456,0,0.399024873401031,0.170733605754134,0,0,0,0.222246727801615,0.412070114477788,0.320919209591815,0.758091635291392,0,0.188626341386076,0.280924522409647,0.128050304809739,0.114870937911227,0.476293691283074,0.347652977834566,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0.581385666529314,0.188218760830661,0.169229215783353,0.365855945745545,0,0.271608227691724,0.561142271657738,0,0,0.818462086339379,0.309873682371932,0,0.249810577937946,0,0,0,0,0 | |||
|short_description=p5@Lrrtm3 | |||
}} |
Latest revision as of 05:02, 26 September 2015
Short description: | p5@Lrrtm3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lrrtm3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 54bp_to_ENSMUST00000148712_5end |
EntrezGene: | Lrrtm3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 3.46e-09 | 3 |
CNS neuron (sensu Vertebrata) | 4.79e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.79e-08 | 23 |