FFCP PHASE1:Mm9::chr10:52137677..52137724,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=13|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:52137677..52137724,+|id=chr10:52137677..52137724,+|ontology_enrichment_celltype=CL:0000117!1.19e-13!23;CL:0000337!1.19e-13!23;CL:0000393!7.41e-11!39;CL:0000211!7.41e-11!39;CL:0000540!1.88e-10!33;CL:0000047!1.88e-10!33;CL:0000031!1.88e-10!33;CL:0000404!1.88e-10!33;CL:0000055!2.73e-08!50;CL:0000221!4.04e-08!44;CL:0000133!4.04e-08!44;CL:0002319!5.10e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.22e-14,23;CL:0000337,2.22e-14,23;CL:0000393,4.07e-11,39;CL:0000211,4.07e-11,39;CL:0000540,1.13e-10,33;CL:0000047,1.13e-10,33;CL:0000031,1.13e-10,33;CL:0000404,1.13e-10,33;CL:0000221,3.17e-08,44;CL:0000133,3.17e-08,44;CL:0002319,4.06e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.30e-21!73;UBERON:0005743!2.30e-21!73;UBERON:0001049!2.40e-20!52;UBERON:0005068!2.40e-20!52;UBERON:0006241!2.40e-20!52;UBERON:0007135!2.40e-20!52;UBERON:0000073!3.42e-20!75;UBERON:0001016!3.42e-20!75;UBERON:0000955!1.35e-19!50;UBERON:0006238!1.35e-19!50;UBERON:0002616!4.27e-19!49;UBERON:0002020!5.74e-19!34;UBERON:0003080!7.36e-17!40;UBERON:0000033!2.45e-16!63;UBERON:0002780!2.82e-16!39;UBERON:0001890!2.82e-16!39;UBERON:0006240!2.82e-16!39;UBERON:0002791!4.93e-16!29;UBERON:0003528!4.93e-16!29;UBERON:0001893!4.93e-16!29;UBERON:0002346!1.08e-15!71;UBERON:0003075!1.08e-15!71;UBERON:0007284!1.08e-15!71;UBERON:0003056!2.77e-15!49;UBERON:0004121!4.53e-13!102;UBERON:0000924!4.53e-13!102;UBERON:0006601!4.53e-13!102;UBERON:0000956!4.72e-11!21;UBERON:0001869!4.72e-11!21;UBERON:0000203!4.72e-11!21;UBERON:0002619!3.75e-09!17;UBERON:0007811!4.26e-08!86;UBERON:0000153!6.83e-08!94;UBERON:0002021!2.74e-07!10;UBERON:0000411!2.74e-07!10;UBERON:0001950!2.74e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.65e-23,54;UBERON:0001017,2.82e-22,73;UBERON:0001049,2.05e-21,52;UBERON:0005068,2.05e-21,52;UBERON:0006241,2.05e-21,52;UBERON:0007135,2.05e-21,52;UBERON:0001016,1.06e-20,75;UBERON:0002020,7.41e-20,34;UBERON:0000955,1.24e-18,47;UBERON:0006238,1.24e-18,47;UBERON:0002346,2.61e-18,64;UBERON:0003075,2.61e-18,64;UBERON:0007284,2.61e-18,64;UBERON:0002616,4.09e-18,46;UBERON:0003080,2.25e-17,40;UBERON:0002780,9.29e-17,39;UBERON:0001890,9.29e-17,39;UBERON:0006240,9.29e-17,39;UBERON:0003528,9.52e-17,29;UBERON:0002791,9.52e-17,29;UBERON:0001893,9.52e-17,29;UBERON:0003056,1.15e-15,49;UBERON:0004121,4.12e-14,95;UBERON:0000924,4.12e-14,95;UBERON:0006601,4.12e-14,95;UBERON:0010371,9.97e-14,73;UBERON:0010314,2.06e-12,92;UBERON:0000956,1.79e-11,21;UBERON:0001869,1.79e-11,21;UBERON:0000203,1.79e-11,21;UBERON:0002619,1.84e-09,17;UBERON:0002021,1.23e-07,10;UBERON:0000411,1.23e-07,10;UBERON:0001950,1.23e-07,10|phase1_expression=1.60148847104794,2.44282785347553,2.27499619694768,3.0246421130683,4.00716583957078,1.6787927191189,1.40167584357315,0.645616617207881,1.68946466582,2.10658073689794,1.02730780935303,0.957265907944037,0,0.34968160967599,0,0.202475267389826,0,0.157731082679119,0.274228867211478,0,2.29616883407888,1.19149141441062,2.87319768052829,0.95995453676044,1.37645568640302,1.14846392823004,1.29228598847722,2.15471232685889,2.09025761402011,1.76421090831952,1.77384408524244,0.635030673459631,0.61506478758457,0,1.1554064790051,0.498703936075477,1.22501613757421,0,0.7813353445238,0.523523743973798,0,0,0,3.14742044938943,2.73717714292689,4.03802854755699,0,2.61630187656536,0.659058548203415,3.4997381833371,1.53985063787899,2.87505128729943,0.503347818173209,0,1.68046899571232,1.28629718017973,1.43266719969378,1.03134418455488,5.05791152148994,6.87688273053643,4.43681982454325,0.338844532069132,0,0,0,1.4209602298922,0.299600110518405,1.15265491596466,3.83651565541367,3.51015439662396,3.99617426567626,3.71346279724945,3.53389665522582,4.28717797252339,2.49198224647415,4.5960939330501,5.50579404996943,5.61824287574826,5.52983519722476,6.3305418110493,5.94669683415663,5.2091337055676,4.18774498502071,5.06486349028512,5.65353516774197,4.71405736757868,7.54569908235246,7.82877672466262,0.757261933331841,0.755715601067855,0.579728977403356,0.860423876981386,0,0.539703191637817,0.649776417447669,1.79210754838934,0.842666520790511,0.852151612890289,1.03914401841148,1.41335829804136,1.83096445709685,0,2.54805239706646,0,0.216491041011214,0.760079596425296,0.505524445014783,1.59857431606684,0.517875767294343,0.890652834388949,0.867426633830679,2.13125834818499,1.38369298353635,0.904335843315735,0.823120949949934,1.0053327306374,0.988779870937496,1.3013942122792,1.76922110389975,1.13236794963186,0,0,1.86391761218122,2.92780797011547,1.46612694769419,2.55457055208591,0.838705871541442,1.79970819298022,1.01656181658452,5.09288173976397,8.6925114535539,8.92145900001337,4.86708096538374,5.37002460393694,5.81806524766768,5.84068547043927,1.83310854930569,1.36847667671102,1.51633655060205,0.631325567659422,1.56144531555244,2.06911893990126,1.26043490863744,1.80845781402858,1.63287597963187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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr10:52137677..52137724,+ | |||
|description=CAGE_peak_at_chr10:52137677..52137724,+ | |||
|id=chr10:52137677..52137724,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.19e-13!23;CL:0000337!1.19e-13!23;CL:0000393!7.41e-11!39;CL:0000211!7.41e-11!39;CL:0000540!1.88e-10!33;CL:0000047!1.88e-10!33;CL:0000031!1.88e-10!33;CL:0000404!1.88e-10!33;CL:0000055!2.73e-08!50;CL:0000221!4.04e-08!44;CL:0000133!4.04e-08!44;CL:0002319!5.10e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.22e-14,23;CL:0000337,2.22e-14,23;CL:0000393,4.07e-11,39;CL:0000211,4.07e-11,39;CL:0000540,1.13e-10,33;CL:0000047,1.13e-10,33;CL:0000031,1.13e-10,33;CL:0000404,1.13e-10,33;CL:0000221,3.17e-08,44;CL:0000133,3.17e-08,44;CL:0002319,4.06e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.30e-21!73;UBERON:0005743!2.30e-21!73;UBERON:0001049!2.40e-20!52;UBERON:0005068!2.40e-20!52;UBERON:0006241!2.40e-20!52;UBERON:0007135!2.40e-20!52;UBERON:0000073!3.42e-20!75;UBERON:0001016!3.42e-20!75;UBERON:0000955!1.35e-19!50;UBERON:0006238!1.35e-19!50;UBERON:0002616!4.27e-19!49;UBERON:0002020!5.74e-19!34;UBERON:0003080!7.36e-17!40;UBERON:0000033!2.45e-16!63;UBERON:0002780!2.82e-16!39;UBERON:0001890!2.82e-16!39;UBERON:0006240!2.82e-16!39;UBERON:0002791!4.93e-16!29;UBERON:0003528!4.93e-16!29;UBERON:0001893!4.93e-16!29;UBERON:0002346!1.08e-15!71;UBERON:0003075!1.08e-15!71;UBERON:0007284!1.08e-15!71;UBERON:0003056!2.77e-15!49;UBERON:0004121!4.53e-13!102;UBERON:0000924!4.53e-13!102;UBERON:0006601!4.53e-13!102;UBERON:0000956!4.72e-11!21;UBERON:0001869!4.72e-11!21;UBERON:0000203!4.72e-11!21;UBERON:0002619!3.75e-09!17;UBERON:0007811!4.26e-08!86;UBERON:0000153!6.83e-08!94;UBERON:0002021!2.74e-07!10;UBERON:0000411!2.74e-07!10;UBERON:0001950!2.74e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.65e-23,54;UBERON:0001017,2.82e-22,73;UBERON:0001049,2.05e-21,52;UBERON:0005068,2.05e-21,52;UBERON:0006241,2.05e-21,52;UBERON:0007135,2.05e-21,52;UBERON:0001016,1.06e-20,75;UBERON:0002020,7.41e-20,34;UBERON:0000955,1.24e-18,47;UBERON:0006238,1.24e-18,47;UBERON:0002346,2.61e-18,64;UBERON:0003075,2.61e-18,64;UBERON:0007284,2.61e-18,64;UBERON:0002616,4.09e-18,46;UBERON:0003080,2.25e-17,40;UBERON:0002780,9.29e-17,39;UBERON:0001890,9.29e-17,39;UBERON:0006240,9.29e-17,39;UBERON:0003528,9.52e-17,29;UBERON:0002791,9.52e-17,29;UBERON:0001893,9.52e-17,29;UBERON:0003056,1.15e-15,49;UBERON:0004121,4.12e-14,95;UBERON:0000924,4.12e-14,95;UBERON:0006601,4.12e-14,95;UBERON:0010371,9.97e-14,73;UBERON:0010314,2.06e-12,92;UBERON:0000956,1.79e-11,21;UBERON:0001869,1.79e-11,21;UBERON:0000203,1.79e-11,21;UBERON:0002619,1.84e-09,17;UBERON:0002021,1.23e-07,10;UBERON:0000411,1.23e-07,10;UBERON:0001950,1.23e-07,10 | |||
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| |||
|short_description=p@chr10:52137677..52137724,+ | |||
}} |
Latest revision as of 11:05, 4 August 2015
Short description: | p@chr10:52137677..52137724, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:52137677..52137724, + |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.22e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.22e-14 | 23 |
electrically responsive cell | 4.07e-11 | 39 |
electrically active cell | 4.07e-11 | 39 |
neuron | 1.13e-10 | 33 |
neuronal stem cell | 1.13e-10 | 33 |
neuroblast | 1.13e-10 | 33 |
electrically signaling cell | 1.13e-10 | 33 |
ectodermal cell | 3.17e-08 | 44 |
neurectodermal cell | 3.17e-08 | 44 |
neural cell | 4.06e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.65e-23 | 54 |
central nervous system | 2.82e-22 | 73 |
neural tube | 2.05e-21 | 52 |
neural rod | 2.05e-21 | 52 |
future spinal cord | 2.05e-21 | 52 |
neural keel | 2.05e-21 | 52 |
nervous system | 1.06e-20 | 75 |
gray matter | 7.41e-20 | 34 |
brain | 1.24e-18 | 47 |
future brain | 1.24e-18 | 47 |
neurectoderm | 2.61e-18 | 64 |
neural plate | 2.61e-18 | 64 |
presumptive neural plate | 2.61e-18 | 64 |
regional part of brain | 4.09e-18 | 46 |
anterior neural tube | 2.25e-17 | 40 |
regional part of forebrain | 9.29e-17 | 39 |
forebrain | 9.29e-17 | 39 |
future forebrain | 9.29e-17 | 39 |
brain grey matter | 9.52e-17 | 29 |
regional part of telencephalon | 9.52e-17 | 29 |
telencephalon | 9.52e-17 | 29 |
pre-chordal neural plate | 1.15e-15 | 49 |
ectoderm-derived structure | 4.12e-14 | 95 |
ectoderm | 4.12e-14 | 95 |
presumptive ectoderm | 4.12e-14 | 95 |
ecto-epithelium | 9.97e-14 | 73 |
structure with developmental contribution from neural crest | 2.06e-12 | 92 |
cerebral cortex | 1.79e-11 | 21 |
cerebral hemisphere | 1.79e-11 | 21 |
pallium | 1.79e-11 | 21 |
regional part of cerebral cortex | 1.84e-09 | 17 |
occipital lobe | 1.23e-07 | 10 |
visual cortex | 1.23e-07 | 10 |
neocortex | 1.23e-07 | 10 |