FFCP PHASE1:Mm9::chr10:129816189..129816193,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=4|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:129816189..129816193,+|id=chr10:129816189..129816193,+|ontology_enrichment_celltype=CL:0000791!1.42e-11!9;CL:0000789!1.42e-11!9;CL:0002420!1.42e-11!9;CL:0002419!1.42e-11!9;CL:0000790!1.42e-11!9;CL:0000084!1.74e-11!11;CL:0000827!1.74e-11!11;CL:0000893!1.84e-10!6;CL:0002489!1.84e-10!6;CL:0000898!1.84e-10!6;CL:0000809!1.84e-10!6;CL:0000810!1.84e-10!6;CL:0000895!1.84e-10!6;CL:0000808!1.84e-10!6;CL:0000894!1.84e-10!6;CL:0000806!1.84e-10!6;CL:0000807!1.84e-10!6;CL:0000805!1.84e-10!6;CL:0002425!1.84e-10!6;CL:0002436!1.84e-10!6;CL:0002427!1.84e-10!6;CL:0002428!1.84e-10!6;CL:0002429!1.84e-10!6;CL:0002433!1.84e-10!6;CL:0002431!1.84e-10!6;CL:0002432!1.84e-10!6;CL:0000838!2.39e-10!12;CL:0000624!3.01e-10!8;CL:0002031!6.42e-10!25;CL:0000542!2.18e-09!13;CL:0000051!2.18e-09!13;CL:0000988!5.62e-07!32;CL:0002032!5.62e-07!32;CL:0000037!5.62e-07!32;CL:0000566!5.62e-07!32;CL:0000837!5.62e-07!32|ontology_enrichment_celltype_v019_2=CL:0000893,3.30e-11,6;CL:0002489,3.30e-11,6;CL:0000898,3.30e-11,6;CL:0000809,3.30e-11,6;CL:0000810,3.30e-11,6;CL:0000895,3.30e-11,6;CL:0000808,3.30e-11,6;CL:0000894,3.30e-11,6;CL:0000806,3.30e-11,6;CL:0000807,3.30e-11,6;CL:0000805,3.30e-11,6;CL:0002425,3.30e-11,6;CL:0002436,3.30e-11,6;CL:0002427,3.30e-11,6;CL:0002428,3.30e-11,6;CL:0002429,3.30e-11,6;CL:0002433,3.30e-11,6;CL:0002431,3.30e-11,6;CL:0002432,3.30e-11,6;CL:0000624,1.49e-08,8;CL:0000791,1.16e-07,9;CL:0000789,1.16e-07,9;CL:0002420,1.16e-07,9;CL:0002419,1.16e-07,9;CL:0000790,1.16e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!5.45e-27!23;UBERON:0000974!5.45e-27!23;UBERON:0004807!5.45e-27!23;UBERON:0005058!5.45e-27!23;UBERON:0003351!5.45e-27!23;UBERON:0009113!5.45e-27!23;UBERON:0003295!5.45e-27!23;UBERON:0009722!5.45e-27!23;UBERON:0005562!5.45e-27!23;UBERON:0007690!5.45e-27!23;UBERON:0004177!6.40e-27!29;UBERON:0006562!1.33e-25!24;UBERON:0003408!1.33e-25!24;UBERON:0001557!1.33e-25!24;UBERON:0001042!1.33e-25!24;UBERON:0008814!1.33e-25!24;UBERON:0009145!1.33e-25!24;UBERON:0002390!3.25e-23!45;UBERON:0003061!3.25e-23!45;UBERON:0002193!3.80e-23!48;UBERON:0000072!4.60e-22!27;UBERON:0000065!3.69e-18!41;UBERON:0001004!1.47e-17!42;UBERON:0000063!1.27e-15!35;UBERON:0002405!2.08e-14!70;UBERON:0005057!1.22e-13!51;UBERON:0003081!1.30e-11!88;UBERON:0005911!5.69e-09!69;UBERON:0003929!7.41e-09!55;UBERON:0001041!1.11e-08!92;UBERON:0002368!1.76e-08!60;UBERON:0000077!7.77e-08!97;UBERON:0002530!2.22e-07!65;UBERON:0000064!6.33e-07!99;UBERON:0000949!6.96e-07!72|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.46e-45,23;UBERON:0000974,6.46e-45,23;UBERON:0004807,6.46e-45,23;UBERON:0005058,6.46e-45,23;UBERON:0003351,6.46e-45,23;UBERON:0009113,6.46e-45,23;UBERON:0003295,6.46e-45,23;UBERON:0009722,6.46e-45,23;UBERON:0005562,6.46e-45,23;UBERON:0007690,6.46e-45,23;UBERON:0006562,5.11e-43,24;UBERON:0003408,5.11e-43,24;UBERON:0001557,5.11e-43,24;UBERON:0001042,5.11e-43,24;UBERON:0008814,5.11e-43,24;UBERON:0009145,5.11e-43,24;UBERON:0000072,3.64e-38,27;UBERON:0004177,1.74e-35,29;UBERON:0005057,1.74e-35,29;UBERON:0000077,2.80e-29,35;UBERON:0007811,1.91e-28,36;UBERON:0000065,6.96e-25,41;UBERON:0001004,2.84e-24,42;UBERON:0000153,1.09e-23,43;UBERON:0002390,1.33e-22,45;UBERON:0003061,1.33e-22,45;UBERON:0002193,3.87e-21,48;UBERON:0002405,3.87e-21,48;UBERON:0003929,2.43e-18,55;UBERON:0002368,9.70e-17,60;UBERON:0002530,2.20e-15,65;UBERON:0000490,3.89e-15,66;UBERON:0005911,1.94e-14,69;UBERON:0000949,8.48e-14,72;UBERON:0001041,2.53e-12,80;UBERON:0003081,2.98e-11,87;UBERON:0004921,2.44e-08,114;UBERON:0001007,3.55e-08,116;UBERON:0001555,3.55e-08,116;UBERON:0007026,3.55e-08,116;UBERON:0004119,5.10e-08,118;UBERON:0000925,5.10e-08,118;UBERON:0006595,5.10e-08,118;UBERON:0000926,7.24e-08,120;UBERON:0004120,7.24e-08,120;UBERON:0006603,7.24e-08,120;UBERON:0001048,6.31e-07,134|phase1_expression=0,0,0,0,0,0,0,0.645616617207881,0.281577444303333,0.70219357896598,1.02730780935303,0.797721589953364,1.36960583944965,1.22388563386596,0.333109761815663,0.202475267389826,0,0.473193248037357,0.137114433605739,0.42438965179803,0.17008658030214,0.297872853602656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0,0,0,0,0.517875767294343,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0.441683036920787,0.484875253135222,0,0,0,0,0,0,0,0.149790639404823,0,0,0.173824320192276,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322928853391811,0.0603129249281559,0,0,0,0,0.341741761595705,0,0.185194527369712,0,0,0.228778173206523,0,0,0.138199973804424,0,0,0,0,0,0,0,0,0.26175594198403,0,0,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0.202725215290164,0.102710957164827,0.25984164595559,1.25318686967237,0.79472541912506,1.80293174279953,2.80610101631697,2.3222283488074,1.600342939755,1.91569751759997,1.75424185331554,1.82802499116626,2.80504565235765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0.145346416632329,0.0941093804153306,0,0.182927972872773,0,0.135804113845862,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0|short_description=p@chr10:129816189..129816193,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=4 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr10:129816189..129816193,+ | |||
|description=CAGE_peak_at_chr10:129816189..129816193,+ | |||
|id=chr10:129816189..129816193,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.42e-11!9;CL:0000789!1.42e-11!9;CL:0002420!1.42e-11!9;CL:0002419!1.42e-11!9;CL:0000790!1.42e-11!9;CL:0000084!1.74e-11!11;CL:0000827!1.74e-11!11;CL:0000893!1.84e-10!6;CL:0002489!1.84e-10!6;CL:0000898!1.84e-10!6;CL:0000809!1.84e-10!6;CL:0000810!1.84e-10!6;CL:0000895!1.84e-10!6;CL:0000808!1.84e-10!6;CL:0000894!1.84e-10!6;CL:0000806!1.84e-10!6;CL:0000807!1.84e-10!6;CL:0000805!1.84e-10!6;CL:0002425!1.84e-10!6;CL:0002436!1.84e-10!6;CL:0002427!1.84e-10!6;CL:0002428!1.84e-10!6;CL:0002429!1.84e-10!6;CL:0002433!1.84e-10!6;CL:0002431!1.84e-10!6;CL:0002432!1.84e-10!6;CL:0000838!2.39e-10!12;CL:0000624!3.01e-10!8;CL:0002031!6.42e-10!25;CL:0000542!2.18e-09!13;CL:0000051!2.18e-09!13;CL:0000988!5.62e-07!32;CL:0002032!5.62e-07!32;CL:0000037!5.62e-07!32;CL:0000566!5.62e-07!32;CL:0000837!5.62e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000893,3.30e-11,6;CL:0002489,3.30e-11,6;CL:0000898,3.30e-11,6;CL:0000809,3.30e-11,6;CL:0000810,3.30e-11,6;CL:0000895,3.30e-11,6;CL:0000808,3.30e-11,6;CL:0000894,3.30e-11,6;CL:0000806,3.30e-11,6;CL:0000807,3.30e-11,6;CL:0000805,3.30e-11,6;CL:0002425,3.30e-11,6;CL:0002436,3.30e-11,6;CL:0002427,3.30e-11,6;CL:0002428,3.30e-11,6;CL:0002429,3.30e-11,6;CL:0002433,3.30e-11,6;CL:0002431,3.30e-11,6;CL:0002432,3.30e-11,6;CL:0000624,1.49e-08,8;CL:0000791,1.16e-07,9;CL:0000789,1.16e-07,9;CL:0002420,1.16e-07,9;CL:0002419,1.16e-07,9;CL:0000790,1.16e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!5.45e-27!23;UBERON:0000974!5.45e-27!23;UBERON:0004807!5.45e-27!23;UBERON:0005058!5.45e-27!23;UBERON:0003351!5.45e-27!23;UBERON:0009113!5.45e-27!23;UBERON:0003295!5.45e-27!23;UBERON:0009722!5.45e-27!23;UBERON:0005562!5.45e-27!23;UBERON:0007690!5.45e-27!23;UBERON:0004177!6.40e-27!29;UBERON:0006562!1.33e-25!24;UBERON:0003408!1.33e-25!24;UBERON:0001557!1.33e-25!24;UBERON:0001042!1.33e-25!24;UBERON:0008814!1.33e-25!24;UBERON:0009145!1.33e-25!24;UBERON:0002390!3.25e-23!45;UBERON:0003061!3.25e-23!45;UBERON:0002193!3.80e-23!48;UBERON:0000072!4.60e-22!27;UBERON:0000065!3.69e-18!41;UBERON:0001004!1.47e-17!42;UBERON:0000063!1.27e-15!35;UBERON:0002405!2.08e-14!70;UBERON:0005057!1.22e-13!51;UBERON:0003081!1.30e-11!88;UBERON:0005911!5.69e-09!69;UBERON:0003929!7.41e-09!55;UBERON:0001041!1.11e-08!92;UBERON:0002368!1.76e-08!60;UBERON:0000077!7.77e-08!97;UBERON:0002530!2.22e-07!65;UBERON:0000064!6.33e-07!99;UBERON:0000949!6.96e-07!72 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.46e-45,23;UBERON:0000974,6.46e-45,23;UBERON:0004807,6.46e-45,23;UBERON:0005058,6.46e-45,23;UBERON:0003351,6.46e-45,23;UBERON:0009113,6.46e-45,23;UBERON:0003295,6.46e-45,23;UBERON:0009722,6.46e-45,23;UBERON:0005562,6.46e-45,23;UBERON:0007690,6.46e-45,23;UBERON:0006562,5.11e-43,24;UBERON:0003408,5.11e-43,24;UBERON:0001557,5.11e-43,24;UBERON:0001042,5.11e-43,24;UBERON:0008814,5.11e-43,24;UBERON:0009145,5.11e-43,24;UBERON:0000072,3.64e-38,27;UBERON:0004177,1.74e-35,29;UBERON:0005057,1.74e-35,29;UBERON:0000077,2.80e-29,35;UBERON:0007811,1.91e-28,36;UBERON:0000065,6.96e-25,41;UBERON:0001004,2.84e-24,42;UBERON:0000153,1.09e-23,43;UBERON:0002390,1.33e-22,45;UBERON:0003061,1.33e-22,45;UBERON:0002193,3.87e-21,48;UBERON:0002405,3.87e-21,48;UBERON:0003929,2.43e-18,55;UBERON:0002368,9.70e-17,60;UBERON:0002530,2.20e-15,65;UBERON:0000490,3.89e-15,66;UBERON:0005911,1.94e-14,69;UBERON:0000949,8.48e-14,72;UBERON:0001041,2.53e-12,80;UBERON:0003081,2.98e-11,87;UBERON:0004921,2.44e-08,114;UBERON:0001007,3.55e-08,116;UBERON:0001555,3.55e-08,116;UBERON:0007026,3.55e-08,116;UBERON:0004119,5.10e-08,118;UBERON:0000925,5.10e-08,118;UBERON:0006595,5.10e-08,118;UBERON:0000926,7.24e-08,120;UBERON:0004120,7.24e-08,120;UBERON:0006603,7.24e-08,120;UBERON:0001048,6.31e-07,134 | |||
|phase1_expression=0,0,0,0,0,0,0,0.645616617207881,0.281577444303333,0.70219357896598,1.02730780935303,0.797721589953364,1.36960583944965,1.22388563386596,0.333109761815663,0.202475267389826,0,0.473193248037357,0.137114433605739,0.42438965179803,0.17008658030214,0.297872853602656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0,0,0,0,0.517875767294343,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0.441683036920787,0.484875253135222,0,0,0,0,0,0,0,0.149790639404823,0,0,0.173824320192276,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322928853391811,0.0603129249281559,0,0,0,0,0.341741761595705,0,0.185194527369712,0,0,0.228778173206523,0,0,0.138199973804424,0,0,0,0,0,0,0,0,0.26175594198403,0,0,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0.202725215290164,0.102710957164827,0.25984164595559,1.25318686967237,0.79472541912506,1.80293174279953,2.80610101631697,2.3222283488074,1.600342939755,1.91569751759997,1.75424185331554,1.82802499116626,2.80504565235765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0.145346416632329,0.0941093804153306,0,0.182927972872773,0,0.135804113845862,0,0,0,0,0,0,0.249810577937946,0,0,0,0,0 | |||
|short_description=p@chr10:129816189..129816193,+ | |||
}} |
Latest revision as of 03:45, 4 August 2015
Short description: | p@chr10:129816189..129816193, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:129816189..129816193, + |
Coexpression cluster: | MCL_coexpression_mm9:4 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymocyte | 3.30e-11 | 6 |
double negative thymocyte | 3.30e-11 | 6 |
naive T cell | 3.30e-11 | 6 |
double-positive, alpha-beta thymocyte | 3.30e-11 | 6 |
CD4-positive, alpha-beta thymocyte | 3.30e-11 | 6 |
naive thymus-derived CD4-positive, alpha-beta T cell | 3.30e-11 | 6 |
DN4 thymocyte | 3.30e-11 | 6 |
DN1 thymic pro-T cell | 3.30e-11 | 6 |
DN2 thymocyte | 3.30e-11 | 6 |
DN3 thymocyte | 3.30e-11 | 6 |
immature single positive thymocyte | 3.30e-11 | 6 |
early T lineage precursor | 3.30e-11 | 6 |
mature CD4 single-positive thymocyte | 3.30e-11 | 6 |
resting double-positive thymocyte | 3.30e-11 | 6 |
double-positive blast | 3.30e-11 | 6 |
CD69-positive double-positive thymocyte | 3.30e-11 | 6 |
CD69-positive, CD4-positive single-positive thymocyte | 3.30e-11 | 6 |
CD4-positive, CD8-intermediate double-positive thymocyte | 3.30e-11 | 6 |
CD24-positive, CD4 single-positive thymocyte | 3.30e-11 | 6 |
CD4-positive, alpha-beta T cell | 1.49e-08 | 8 |
mature alpha-beta T cell | 1.16e-07 | 9 |
alpha-beta T cell | 1.16e-07 | 9 |
immature T cell | 1.16e-07 | 9 |
mature T cell | 1.16e-07 | 9 |
immature alpha-beta T cell | 1.16e-07 | 9 |