FFCP PHASE1:Mm9::chr10:127935826..127935875,+: Difference between revisions
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{{FFCP|EntrezGene=|HGNC=|UniProt=|association_with_transcript=-427bp_to_uc007hnf.1_5end|description=CAGE_peak_1_at_uc007hnf.1_5end|id=chr10:127935826..127935875,+|ontology_enrichment_celltype=CL:0000117!4.68e-10!23;CL:0000337!4.68e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.50e-10,23;CL:0000337,1.50e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!4.09e-20!94;UBERON:0007811!8.34e-20!86;UBERON:0000033!4.69e-19!63;UBERON:0001049!2.99e-17!52;UBERON:0005068!2.99e-17!52;UBERON:0006241!2.99e-17!52;UBERON:0007135!2.99e-17!52;UBERON:0000955!3.79e-17!50;UBERON:0006238!3.79e-17!50;UBERON:0002616!1.52e-16!49;UBERON:0003056!6.66e-15!49;UBERON:0002020!1.34e-14!34;UBERON:0003080!2.13e-14!40;UBERON:0002780!7.24e-14!39;UBERON:0001890!7.24e-14!39;UBERON:0006240!7.24e-14!39;UBERON:0002791!4.63e-13!29;UBERON:0003528!4.63e-13!29;UBERON:0001893!4.63e-13!29;UBERON:0002346!5.87e-13!71;UBERON:0003075!5.87e-13!71;UBERON:0007284!5.87e-13!71;UBERON:0001017!1.12e-12!73;UBERON:0005743!1.12e-12!73;UBERON:0004121!7.52e-12!102;UBERON:0000924!7.52e-12!102;UBERON:0006601!7.52e-12!102;UBERON:0000073!1.96e-11!75;UBERON:0001016!1.96e-11!75;UBERON:0000956!1.13e-09!21;UBERON:0001869!1.13e-09!21;UBERON:0000203!1.13e-09!21;UBERON:0000475!2.21e-08!200;UBERON:0002619!7.06e-08!17;UBERON:0002021!1.62e-07!10;UBERON:0000411!1.62e-07!10;UBERON:0001950!1.62e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.22e-18,54;UBERON:0001049,3.65e-17,52;UBERON:0005068,3.65e-17,52;UBERON:0006241,3.65e-17,52;UBERON:0007135,3.65e-17,52;UBERON:0010371,4.07e-17,73;UBERON:0000955,1.18e-15,47;UBERON:0006238,1.18e-15,47;UBERON:0002346,1.37e-15,64;UBERON:0003075,1.37e-15,64;UBERON:0007284,1.37e-15,64;UBERON:0003056,3.74e-15,49;UBERON:0002616,4.85e-15,46;UBERON:0002020,6.79e-15,34;UBERON:0003080,1.02e-14,40;UBERON:0002780,3.70e-14,39;UBERON:0001890,3.70e-14,39;UBERON:0006240,3.70e-14,39;UBERON:0004121,5.21e-14,95;UBERON:0000924,5.21e-14,95;UBERON:0006601,5.21e-14,95;UBERON:0003528,2.91e-13,29;UBERON:0002791,2.91e-13,29;UBERON:0001893,2.91e-13,29;UBERON:0001017,1.71e-12,73;UBERON:0001016,1.97e-11,75;UBERON:0000956,1.09e-09,21;UBERON:0001869,1.09e-09,21;UBERON:0000203,1.09e-09,21;UBERON:0010314,3.84e-09,92;UBERON:0002021,7.30e-08,10;UBERON:0000411,7.30e-08,10;UBERON:0001950,7.30e-08,10;UBERON:0002619,8.43e-08,17|phase1_expression=3.84357233051505,0,0,0,1.00179145989269,0.671517087647559,0.233612640595526,8.52213934714403,0.281577444303333,0.936258105287974,0.34243593645101,0.159544317990673,12.497653284978,13.5501623749446,0.666219523631325,0.607425802169478,0,1.41957974411207,2.05671650408608,0,8.41928572495591,0.397163804803541,0.522399578277871,0.319984845586813,0.45881856213434,0,0,0.215471232685889,0.190023419456374,0.756090389279792,0.443461021310609,0,0.61506478758457,0,0.288851619751275,0.498703936075477,0.408338712524738,0,0,0.523523743973798,0.588231488031014,1.36609096991689,1.45653105909346,1.00717454380462,0.608261587317087,0.734187008646726,0.782391344348039,0.872100625521786,0.439372365468944,0.972149495371417,0.699932108126813,1.43752564364972,0.838913030288682,2.17608642603403,0.672187598284928,0,0.286533439938757,0,7.89034197352431,7.93486468908049,9.50747105259269,0,0,0,0,0,0.599200221036809,0.384218305321555,6.947204024668,7.56033254657468,7.78202357000113,5.14171771926846,4.63823935998388,7.59442955132715,5.84657373211242,6.43453150627015,9.91042928994498,6.38436690425939,5.37622866396852,8.04506355154182,7.41049913179518,7.8137005583514,6.70039197603314,5.06486349028512,5.34793867218835,3.53554302568401,4.6982654663704,7.45597783301202,0.075726193333184,0.0755715601067855,0,1.72084775396277,0,0,1.29955283489534,1.34408066129201,2.94933282276679,0.511290967734173,2.59786004602869,2.47337702157238,3.52108549441701,0,0,0,0.216491041011214,0,0,1.7127581957859,1.8125651855302,1.33597925158342,0.693941307064543,0.304465478312141,0.691846491768175,0.904335843315735,1.29347577849275,0.502666365318702,0.247194967734374,2.31358971071859,1.76922110389975,1.94120219936891,2.20841518460394,1.45462575940567,1.86391761218122,18.737971008739,15.9179497178226,0.766371165625774,0,0,0.127070227073065,11.2342979553617,15.0975198930147,7.28795242254614,13.0368240144207,21.2243829584174,8.72709787150152,12.3303359931496,2.03678727700633,1.36847667671102,9.85618757891331,6.73413938836717,0.260240885925407,0.689706313300419,2.88099407688559,2.86339153887859,4.08218994907967,3.97152532883034,4.8724896771059,10.0894314588216,0.646703978798527,2.26927296201383,2.63926686245923,3.06874025398605,4.72680323683516,1.39300866608867,3.2925141825271,2.18937693500343,0,0,0,0.207125772535502,0.703578179943289,0.540186184383045,1.65721314909647,1.57411385397923,2.00547246753592,1.16266972375204,1.07309360559848,0.700592054203017,1.6455984991348,1.64167464079095,1.86458261955468,2.04679982395465,2.19550115291051,1.47627060636409,14.0894265537965,8.84979666461846,0.660837565967596,0.264450566663544,1.4930177537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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-427bp_to_uc007hnf.1_5end | |||
|cluster_id=chr10:127935826..127935875,+ | |||
|description=CAGE_peak_1_at_uc007hnf.1_5end | |||
|id=chr10:127935826..127935875,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.68e-10!23;CL:0000337!4.68e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.50e-10,23;CL:0000337,1.50e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!4.09e-20!94;UBERON:0007811!8.34e-20!86;UBERON:0000033!4.69e-19!63;UBERON:0001049!2.99e-17!52;UBERON:0005068!2.99e-17!52;UBERON:0006241!2.99e-17!52;UBERON:0007135!2.99e-17!52;UBERON:0000955!3.79e-17!50;UBERON:0006238!3.79e-17!50;UBERON:0002616!1.52e-16!49;UBERON:0003056!6.66e-15!49;UBERON:0002020!1.34e-14!34;UBERON:0003080!2.13e-14!40;UBERON:0002780!7.24e-14!39;UBERON:0001890!7.24e-14!39;UBERON:0006240!7.24e-14!39;UBERON:0002791!4.63e-13!29;UBERON:0003528!4.63e-13!29;UBERON:0001893!4.63e-13!29;UBERON:0002346!5.87e-13!71;UBERON:0003075!5.87e-13!71;UBERON:0007284!5.87e-13!71;UBERON:0001017!1.12e-12!73;UBERON:0005743!1.12e-12!73;UBERON:0004121!7.52e-12!102;UBERON:0000924!7.52e-12!102;UBERON:0006601!7.52e-12!102;UBERON:0000073!1.96e-11!75;UBERON:0001016!1.96e-11!75;UBERON:0000956!1.13e-09!21;UBERON:0001869!1.13e-09!21;UBERON:0000203!1.13e-09!21;UBERON:0000475!2.21e-08!200;UBERON:0002619!7.06e-08!17;UBERON:0002021!1.62e-07!10;UBERON:0000411!1.62e-07!10;UBERON:0001950!1.62e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.22e-18,54;UBERON:0001049,3.65e-17,52;UBERON:0005068,3.65e-17,52;UBERON:0006241,3.65e-17,52;UBERON:0007135,3.65e-17,52;UBERON:0010371,4.07e-17,73;UBERON:0000955,1.18e-15,47;UBERON:0006238,1.18e-15,47;UBERON:0002346,1.37e-15,64;UBERON:0003075,1.37e-15,64;UBERON:0007284,1.37e-15,64;UBERON:0003056,3.74e-15,49;UBERON:0002616,4.85e-15,46;UBERON:0002020,6.79e-15,34;UBERON:0003080,1.02e-14,40;UBERON:0002780,3.70e-14,39;UBERON:0001890,3.70e-14,39;UBERON:0006240,3.70e-14,39;UBERON:0004121,5.21e-14,95;UBERON:0000924,5.21e-14,95;UBERON:0006601,5.21e-14,95;UBERON:0003528,2.91e-13,29;UBERON:0002791,2.91e-13,29;UBERON:0001893,2.91e-13,29;UBERON:0001017,1.71e-12,73;UBERON:0001016,1.97e-11,75;UBERON:0000956,1.09e-09,21;UBERON:0001869,1.09e-09,21;UBERON:0000203,1.09e-09,21;UBERON:0010314,3.84e-09,92;UBERON:0002021,7.30e-08,10;UBERON:0000411,7.30e-08,10;UBERON:0001950,7.30e-08,10;UBERON:0002619,8.43e-08,17 | |||
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| |||
|short_description=p1@uc007hnf.1 | |||
}} |
Latest revision as of 02:54, 4 August 2015
Short description: | p1@uc007hnf.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc007hnf.1_5end |
Coexpression cluster: | NA |
Association with transcript: | -427bp_to_uc007hnf.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.50e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.50e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.22e-18 | 54 |
neural tube | 3.65e-17 | 52 |
neural rod | 3.65e-17 | 52 |
future spinal cord | 3.65e-17 | 52 |
neural keel | 3.65e-17 | 52 |
ecto-epithelium | 4.07e-17 | 73 |
brain | 1.18e-15 | 47 |
future brain | 1.18e-15 | 47 |
neurectoderm | 1.37e-15 | 64 |
neural plate | 1.37e-15 | 64 |
presumptive neural plate | 1.37e-15 | 64 |
pre-chordal neural plate | 3.74e-15 | 49 |
regional part of brain | 4.85e-15 | 46 |
gray matter | 6.79e-15 | 34 |
anterior neural tube | 1.02e-14 | 40 |
regional part of forebrain | 3.70e-14 | 39 |
forebrain | 3.70e-14 | 39 |
future forebrain | 3.70e-14 | 39 |
ectoderm-derived structure | 5.21e-14 | 95 |
ectoderm | 5.21e-14 | 95 |
presumptive ectoderm | 5.21e-14 | 95 |
brain grey matter | 2.91e-13 | 29 |
regional part of telencephalon | 2.91e-13 | 29 |
telencephalon | 2.91e-13 | 29 |
central nervous system | 1.71e-12 | 73 |
nervous system | 1.97e-11 | 75 |
cerebral cortex | 1.09e-09 | 21 |
cerebral hemisphere | 1.09e-09 | 21 |
pallium | 1.09e-09 | 21 |
structure with developmental contribution from neural crest | 3.84e-09 | 92 |
occipital lobe | 7.30e-08 | 10 |
visual cortex | 7.30e-08 | 10 |
neocortex | 7.30e-08 | 10 |
regional part of cerebral cortex | 8.43e-08 | 17 |